The bacterial, archaeal and plant plastid code (translation table 11) is the DNA code used by bacteria, archaea, prokaryotic ... strain PCC6803 by amino-terminal protein sequencing". DNA Research. 3 (4): 225-32. doi:10.1093/dnares/3.4.225. PMID 8946162. ...

April 1999). "Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1". DNA Research. 6 (2 ... nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order ... December 2000). "Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium". ... This list of sequenced archaeal genomes contains all the archaea known to have publicly available complete genome sequences ...

Bell SD (2012). "Archaeal Orc1/Cdc6 Proteins". The Eukaryotic Replisome: A Guide to Protein Structure and Function. Subcellular ... A DNA unwinding element (DUE or DNAUE) is the initiation site for the opening of the double helix structure of the DNA at the ... In prokaryotes, most of the time DNA replication is occurring from one single replication origin on one single strand of DNA ... The linear nature of eukaryotic DNA, vs prokaryotic circular DNA, though, is easier to unwind its duplex once has been properly ...

Matsumiya S, Ishino Y, Morikawa K (January 2001). "Crystal structure of an archaeal DNA sliding clamp: proliferating cell ... The DNA clamp assembles on the DNA at the replication fork and "slides" along the DNA with the advancing polymerase, aided by a ... DNA polymerase III is the primary enzyme complex involved in prokaryotic DNA replication. The gamma complex of DNA polymerase ... A DNA clamp, also known as a sliding clamp, is a protein complex that serves as a processivity-promoting factor in DNA ...

Some archaeal viruses encode an integrase that facilitates integration of their DNA into the DNA of their hosts, thereby ... Little is known about how archaeal virus DNA enters the host cell. Caudoviruses inject their DNA through their tail. Haloarcula ... Areas of interest among archaeal virologists include gaining a better understanding of archaeal virus diversity, how archaeal ... Some archaeal viruses, namely viruses of Adnaviria, package their DNA in A-form as a result of an interaction between the MCP ...

van Wolferen, M; Wagner, A; van der Does, C; Albers, SV (2016). "The archaeal Ced system imports DNA". Proc Natl Acad Sci U S A ... The nucleus is an organelle that houses the DNA that makes up a cell's genome. DNA (Deoxyribonucleic acid) itself is arranged ... Their genome is usually a circular bacterial chromosome - a single loop of DNA, although they can also harbor small pieces of ... Karner, M.B.; DeLong, E.F.; Karl, D.M. (2001). "Archaeal dominance in the mesopelagic zone of the Pacific Ocean". Nature. 409 ( ...

van Wolferen M, Wagner A, van der Does C, Albers SV (2016). "The archaeal Ced system imports DNA". Proc. Natl. Acad. Sci. U.S.A ... Under stressful environmental conditions that cause DNA damage, some species of archaea aggregate and transfer DNA between ... allows for efficient recombinational repair of DNA damage and a greater range of genetic diversity by combining the DNA of the ... Both organelles contain their own sets of DNA and have bacteria-like ribosomes. It is likely that modern mitochondria were once ...

"Archaeal DNA-import apparatus is homologous to bacterial conjugation machinery". Nature Communications. 14 (1): 666. Bibcode: ... some of the donor's chromosomal DNA may also be transferred with the plasmid DNA. The amount of chromosomal DNA that is ... "The archaeal Ced system imports DNA". Proceedings of the National Academy of Sciences of the United States of America. 113 (9 ... Thermoproteales system for exchange of DNA), appears to be responsible for the transfer of cellular DNA between members of the ...

"Inhibition of translesion DNA polymerase by archaeal reverse gyrase". Nucleic Acids Research. 37 (13): 4287-4295. doi:10.1093/ ... Using DNA-DNA hybridization, the total DNA-DNA relatedness of the two organisms was found to be 34.6 percent which, along with ... Analysis of this gene demonstrated that this organism shared 97.8 percent of its DNA for this gene with the related bacterium ... profundicola and this lack of external DNA is theorized to be a product of its own defense mechanisms or the lack of free DNA ...

"The archaeal Dps nanocage targets kidney proximal tubules via glomerular filtration". Journal of Clinical Investigation. 129: ... Chiancone E, Ceci P (January 2010). "Role of Dps (DNA-binding proteins from starved cells) aggregation on DNA". Frontiers in ... forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse ... "Iron and hydrogen peroxide detoxification properties of DNA-binding protein from starved cells. A ferritin-like DNA-binding ...

This protein domain provides the precursors necessary for DNA synthesis. It catalyses the biosynthesis of DNA from RNA. This ... Ichiyanagi K, Ishino Y, Ariyoshi M, Komori K, Morikawa K (July 2000). "Crystal structure of an archaeal intein-encoded homing ... It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges ...

"Archaeal DNA-import apparatus is homologous to bacterial conjugation machinery". Nature Communications. 14 (1): 666. doi: ... In Neisseria meningitidis (also called meningococcus), DNA transformation requires the presence of short DNA uptake sequences ( ... "The archaeal Ced system imports DNA". Proceedings of the National Academy of Sciences of the United States of America. 113 (9 ... and so is a kind of selfish DNA; however, other pieces of DNA are often co-transferred and this can result in dissemination of ...

Glas AF, Maul MJ, Cryle M, Barends TR, Schneider S, Kaya E, Schlichting I, Carell T (July 2009). "The archaeal cofactor F0 is a ... DNA photolyase, N-terminal is an evolutionary conserved protein domain. This domain binds a light harvesting chromophore that ... Sancar A (June 2003). "Structure and function of DNA photolyase and cryptochrome blue-light photoreceptors". Chemical Reviews. ... "Crystal structure of DNA photolyase from Anacystis nidulans". Nature Structural Biology. 4 (11): 887-91. doi:10.1038/nsb1197- ...

A-form DNA is believed to be one of the adaptations of hyperthermophilic archaeal viruses to harsh environmental conditions in ... Nucleic acid tertiary structure DNA B-DNA Z-DNA C-DNA Rosalind, Franklin (1953). "The Structure of Sodium Thymonucleate Fibres ... A-DNA is thought to be one of three biologically active double helical structures along with B-DNA and Z-DNA. It is a right- ... A-DNA is broader and more compressed along its axis than B-DNA. The identifiable characteristic of A-DNA X-ray crystallography ...

"Archaeal virus with exceptional virion architecture and the largest single-stranded DNA genome". Proceedings of the National ... For example, thermostable DNA polymerases, such as the Pfu DNA polymerase from Pyrococcus furiosus, revolutionized molecular ... Although research is limited in archaeal quorum sensing, some studies have uncovered LuxR proteins in archaeal species, ... archaeal flagella are synthesized by adding subunits at the base. Archaeal membranes are made of molecules that are distinctly ...

Only some archaeal histones have tails. The distance between the spools around which eukaryotic cells wind their DNA has been ... Without histones, unwound DNA in chromosomes would be very long. For example, each human cell has about 1.8 meters of DNA if ... Histones prevent DNA from becoming tangled and protect it from DNA damage. In addition, histones play important roles in gene ... Marking sites of DNA damage is an important function for histone modifications. Without a repair marker, DNA would get ...

Park J, Chen L, Tockman MS, Elahi A, Lazarus P (February 2004). "The human 8-oxoguanine DNA N-glycosylase 1 (hOGG1) DNA repair ... It is found in bacterial, archaeal and eukaryotic species. OGG1 is the primary enzyme responsible for the excision of 8- ... "Tracing the fates of site-specifically introduced DNA adducts in the human genome". DNA Repair. 15: 11-20. doi:10.1016/j.dnarep ... "Role of XRCC1 in the coordination and stimulation of oxidative DNA damage repair initiated by the DNA glycosylase hOGG1". The ...

"RadA protein is an archaeal RecA protein homolog that catalyzes DNA strand exchange". Genes Dev. 12 (9): 1248-53. doi:10.1101/ ... Virus genomes (either DNA or RNA) are extremely tightly packed into the viral capsid. Many viruses are therefore little more ... In eukaryotic cells, DNA is associated with about an equal mass of histone proteins in a highly condensed nucleoprotein complex ... DNA-binding protein RNA-binding protein Nucleoproteins at the U.S. National Library of Medicine Medical Subject Headings (MeSH ...

"RadA protein is an archaeal RecA protein homolog that catalyzes DNA strand exchange". Genes Dev. 12 (9): 1248-53. doi:10.1101/ ... UvsX, like RecA, can facilitate the assimilation of linear single-stranded DNA into an homologous DNA duplex to produce a D- ... Bernstein C, Bernstein H (2001). DNA repair in bacteriophage. In: Nickoloff JA, Hoekstra MF (Eds.) DNA Damage and Repair, Vol.3 ... DNA recombinases are widely used in multicellular organisms to manipulate the structure of genomes, and to control gene ...

"Archaeal virus with exceptional virion architecture and the largest single-stranded DNA genome". Proc Natl Acad Sci U S A. 109 ... and DNA-binding proteins. ACV does not encode any identifiable DNA or RNA polymerases, nor does it encode any proteins ... However, some other archaeal viruses also have coil-shaped virions like ACV, which may indicate such morphology is an ancient ... All but one ORF has the same directionality as the DNA strand, indicating that the genome is positive-sense. The number of ...

These peptide chains can be found in the archaeal histones, which could have come from eukaryotic H3-H4 tetramer. The archaeal ... When not in the presence of DNA, the core histones assemble into head-to-tail intermediates (H3 and H4 first assemble into ... When just looking at the histone fold motif in the Drosophila the protein-protein and the protein DNA interaction of the core ... These lead into the octamer articulated protein endoskeleton for DNA compaction. From this endoskeleton it has a central ...

"RadA protein is an archaeal RecA protein homolog that catalyzes DNA strand exchange". Genes & Development. 12 (9): 1248-53. doi ... DNA damage-induced oocyte apoptosis depends on the efficiency of the DNA repair machinery that in turn declines with age. ... Unlike other proteins involved in DNA metabolism, the RecA/Rad51 family forms a helical nucleoprotein filament on DNA. This ... Many cancers have epigenetic deficiencies in various DNA repair genes (see Frequencies of epimutations in DNA repair genes in ...

"Archaeal virus with exceptional virion architecture and the largest single-stranded DNA genome". Proc Natl Acad Sci USA 109: ... Prangishvili's studies have helped to reveal that DNA viruses of Archaea constitute a distinctive part of the viral world and ... 9. Prangishvili D, and Krupovic M (2012). "A new proposed taxon for double-stranded DNA viruses, the order Ligamenvirales". ... Prangishvili D, Bamford DH, Forterre P, Iranzo J., Koonon EV, and Krupovic M (2017) "The enigmatic archaeal virosphere". Nature ...

PriS, the archaeal primase small subunit, has a role in translesion synthesis (TLS) and can bypass common DNA lesions. Most ... Bocquier AA, Liu L, Cann IK, Komori K, Kohda D, Ishino Y (March 2001). "Archaeal primase: bridging the gap between RNA and DNA ... DNA primase is an enzyme involved in the replication of DNA and is a type of RNA polymerase. Primase catalyzes the synthesis of ... Then the DNA polymerase forms a protein complex with two primase subunits to form the alpha DNA Polymerase primase complex. ...

The singular archaeal ORC protein recognizes the AT-rich tracts and binds DNA in an ATP-dependent fashion. Eukaryotes typically ... Cdc45 then recruits key components of the replisome; the replicative DNA polymerase α and its primase. DNA replication can then ... Sun J, Kong D (July 2010). "DNA replication origins, ORC/DNA interaction, and assembly of pre-replication complex in eukaryotes ... Cdc6 recruits the licensing factor Cdt1 and MCM2-7. Cdt1 binding and ATP hydrolysis by the ORC and Cdc6 load MCM2-7 onto DNA. ...

The DNA packaging machinery then packs DNA into each head, cutting the DNA when the head is full, attaching a tail to the head ... Krupovic, M; Forterre, P; Bamford, DH (2010). "Comparative analysis of the mosaic genomes of tailed archaeal viruses and ... However, if the incoming DNA is not closely related to DNA sequences in the cell it will be degraded, and the cell will reuse ... Particles contain 7.5 kb DNA fragments. Production of VSH-1 is stimulated by the DNA-damaging agent mitomycin C and by some ...

... binned from the community genomic data using ESOM or Emergent Self-Organizing Map clustering of tetranucleotide DNA signatures ... Archaeal Richmond Mine acidophilic nanoorganisms (ARMAN) were first discovered in an extremely acidic mine located in northern ... However, based on a more complete archaeal genomic tree, they were assigned to a new superphylum named DPANN. The ARMAN groups ... Seasonality of rDNA- and rRNA-derived archaeal communities and methanogenic potential in a boreal mire, ISME Journal 24 July ...

Lykke-Andersen J, Thi-Ngoc HP, Garrett RA (November 1994). "DNA substrate specificity and cleavage kinetics of an archaeal ... They act on the cellular DNA of the cell that synthesizes them; to be precise, in the opposite allele of the gene that encode ... Turmel M, Mercier JP, Côté V, Otis C, Lemieux C (July 1995). "The site-specific DNA endonuclease encoded by a group I intron in ... Goodrich-Blair H, Scarlato V, Gott JM, Xu M, Shub DA (October 1990). "A self-splicing group I intron in the DNA polymerase gene ...

The DNA structure of Thermoplasma volcanium has greater flexibility than other archaeal DNA due to an increased presence of ... 2009). "The stability of the archaeal HU histone-like DNA-binding protein from Thermoplasma volcanium". Extremophiles. 13 (1): ... DNA homologies were significantly different between the two species, which is one source of uniqueness between Thermoplasma ... 2000). "Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium". Proceedings of the ...

Thermodynamically the stress accumulates from the DNA-unwinding and DNA-compaction activities. Once the DNA-RNA heteroduplex is ... Archaeal RNAP subunit previously used an "RpoX" nomenclature where each subunit is assigned a letter in a way unrelated to any ... The 17-bp transcriptional complex has an 8-bp DNA-RNA hybrid, that is, 8 base-pairs involve the RNA transcript bound to the DNA ... This change involves the separation of the DNA strands to form an unwound section of DNA of approximately 13 bp, referred to as ...

"Archaeal DNA-import apparatus is homologous to bacterial conjugation machinery". Nature Communications. 14 (1): 666. doi: ... Symptoms are caused by the insertion of a small segment of DNA (known as the T-DNA, for 'transfer DNA', not to be confused with ... The Ti plasmid integrates a segment of its DNA, known as T-DNA, into the chromosomal DNA of its host plant cells. A. ... It selects the section of the DNA in the host plant that will be replaced and it cuts into this strand of DNA.[citation needed ...