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*  List of sequenced bacterial genomes
A few of the listed genomes may not be in the INSDC database, but in other public databases[verification needed]. Genomes ... 2000). "Selfish DNA in protein-coding genes of Rickettsia". Science. 290 (5490): 347-50. Bibcode:2000Sci...290..347O. doi: ... Most of these sequences have been placed in the International Nucleotide Sequence Database Collaboration, a public database ... BacMap - an up-to-date electronic atlas of annotated bacterial genomes SUPERFAMILY comparative genomics database Includes ...
*  NPU terminology
Example 1: In the items listed above, the reference for 'Blood' is 'Medical Subject Headings database (MESH), ID D001769' which ... is UniProt Protein Knowledgebase, ID P01215, which besides a set of synonyms and a reference to the corresponding gene gives ... Codes are generally only applied where a clear external database reference is available for unequivocal definition of terms. ... the full sequence of the protein. The English NPU definition structure allows for easy and reliable translation of the NPU ...
*  Protein database
... may refer to: Any protein structure database Any protein sequence database Exact names "Protein" database of ... the National Institute of Health Protein Database of Bio-Synthesis, Inc.. ...
*  Ciona intestinalis protein database
The Ciona intestinalis protein database (CIPRO) is a protein database for the tunicate species C. intestinalis. Ciona ... Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and ... 39 (Database issue): D807-14. doi:10.1093/nar/gkq1144. PMC 3013717 . PMID 21071393. http://cipro.ibio.jp/2.5. ...
*  RNA-binding protein database
RBPDB database: a database for RNA-binding proteins. Protein-RNA interface: a database for Protein-RNA interface. Rice RNA ... The RNA-binding Proteins Database (RBPDB) is a biological database of RNA-binding protein specificities that includes ... Right now, RNA-binding protein database (RBPDB) contains 1171 RNA-binding proteins from Homo sapiens, Mus musculus, Drosophila ... Binding Protein Database: a novel database and analysis platform developed for the study of RNA-binding proteins (RBPs) in rice ...
*  Structural Classification of Proteins database
Domain: part of a protein. For simple proteins, it can be the entire protein. The broadest groups on SCOP are the protein fold ... Proteins are placed in the same protein domain if they are isoforms of each other, or if they are essentially the same protein ... The source of protein structures is the Protein Data Bank. The unit of classification of structure in SCOP is the protein ... The Structural Classification of Proteins (SCOP) database is a largely manual classification of protein structural domains ...
*  Transient receptor potential channel-interacting protein database
... (TRIP) is a database of protein-protein interactions for the ... "TRIP Database: a manually curated database of protein-protein interactions for mammalian TRP channels". Nucleic Acids Res. ... protein-protein interactions TRP channels Shin, Young-Cheul; Shin Soo-Yong; So Insuk; Kwon Dongseop; Jeon Ju-Hong (Jan 2011). " ... 39 (Database issue): D356-61. doi:10.1093/nar/gkq814. PMC 3013757 . PMID 20851834. Shin, Young-Cheul; Shin, Soo-Yong; Nyeo Chun ...
*  Families of Structurally Similar Proteins database
Families of Structurally Similar Proteins or FSSP is a database of structurally superimposed proteins generated using the " ... "A database of protein structure families with common folding motifs". Protein Science. 1 (12): 1691-1698. doi:10.1002/pro. ... The database is helpful for the comparison of protein structures. CATH SCOP Holm L, Ouzounis C, Sander C, Tuparev G, Vriend G ( ...
*  Database of protein conformational diversity
The Database of protein conformational diversity (PCDB) is a database of diversity of protein tertiary structures within ... Crystallography Protein structure Juritz EI, Alberti SF, Parisi GD (January 2011). "PCDB: a database of protein conformational ... Proteins are inherently flexible and this database collects information on this subject for use in molecular research. It uses ... The interface for the database allows researchers to find proteins with a range of conformational flexibility allowing them to ...
*  Protein structure database
... is a database of similar protein-protein interfaces in crystal structures of homologous proteins. Protein the NIH protein ... In biology, a protein structure database is a database that is modeled around the various experimentally determined protein ... ModBase a database of three-dimensional protein models calculated by comparative modeling OCA a browser-database for protein ... ProteinLounge a protein databases that includes visuals of protein structure. Also, includes protein pathways and gene ...
*  Human Protein Reference Database
The Human Protein Reference Database (HPRD) is a protein database accessible through the Internet. The HPRD is a result of an ... RefSeq protein pertaining to genes and proteins. This resource depicts information on human protein functions including protein ... The protein-protein interaction and subcellular localization data from HPRD have been used to develop a human protein ... Highlights of HPRD as follows: From 10,000 protein-protein interactions (PPIs) annotated for 3,000 proteins in 2003, HPRD has ...
*  Protein-RNA interface database
The Protein-RNA Interface Database (PRIDB) is a database of protein-RNA interfaces extracted from the Protein Data Bank. RNA- ... a Protein-RNA Interface Database". Nucleic Acids Res. England. 39 (Database issue): D277-82. doi:10.1093/nar/gkq1108. PMC ... binding protein Protein Data Bank Lewis, Benjamin A; Walia Rasna R; Terribilini Michael; Ferguson Jeff; Zheng Charles; Honavar ...
*  Database of Interacting Proteins
The Database of Interacting Proteins (DIP) is a biological database which catalogs experimentally determined interactions ... the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions". Nucleic Acids ... It combines information from a variety of sources to create a single, consistent set of protein-protein interactions. The data ... Other participating databases include the Biomolecular Interaction Network Database (BIND), IntAct, the Molecular Interaction ...
*  G protein-coupled receptors database
G protein-coupled receptors Isberg, Vignir; Vroling, Bas; Kant, Rob van der; Li, Kang; Vriend, Gert; Gloriam, David (2014-01-01 ... GPCRdb contains data, web tools and diagrams for G protein-coupled receptors (GPCRs). It stores a manual annotation of all GPCR ... Check date values in: ,date= (help) GPCRdb GPCR database GLISTEN EU COST Action for GPCRs GPCR-HGmod Predicted structure models ... The GPCRdb browsing system is structured on the following data content: GPCRdb Receptors Signal Proteins Ligands Drugs Crystal ...
*  Orientations of Proteins in Membranes database
Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane protein structures with respect to ... ST NetWatch: Protein Databases review of OPM in Signal Transduction NetWatch list from Science Lomize, Mikhail A.; Lomize, ... The database was widely used in experimental and theoretical studies of membrane-associated proteins. However, structures of ... Proteins structures are taken from the Protein Data Bank. OPM also provides structural classification of membrane-associated ...
*  Cambridge Structural Database
The specific entries are complementary to the other crystallographic databases such as the Protein Data Bank (PDB), Inorganic ... Crystallographic database Protein structure "CCDC CIF Depository Request Form". Cambridge Crystallographic Data Centre. ... The Cambridge Structural Database (CSD) is both a repository and a validated and curated resource for the three-dimensional ... They are also scientifically enriched and included in the database used by software offered by the centre. Targeted subsets of ...
*  MDia1
Protein Database. ... The formin homology protein mDia1 is a Rho GTPase effector ... A mouse embryo cDNA library was screened to identify a RhoA-GTP-binding protein using a yeast two-hybrid system. Further it was ... Several binding proteins can regulate mDia1 localization and activity: ABI1: Helps to localize mDia1 to lamellipodia, filopodia ... The mDia1 polypeptide chain can be divided into four protein domains: GBD/FH3 (Rho GTPase-binding domain/formin homology 3) ...
*  Cell nucleus
permanent dead link] Fox, Archa; Wendy Bickmore (2004). "Nuclear Compartments: Paraspeckles". Nuclear Protein Database. ... The PML protein is the key organizer of these domains that recruits an ever-growing number of proteins, whose only common known ... The nuclear lamina is composed mostly of lamin proteins. Like all proteins, lamins are synthesized in the cytoplasm and later ... The composition by dry weight of the nucleus is approximately: DNA 9%, RNA 1%, Histone Protein 11%, Residual Protein 14%, ...
*  Butantoxin
PubMed Protein Database. UniProtKB/Swiss-Prot: P0C8L1.1. "Potassium channel toxin alpha-KTx 12.1". PubMed Protein Database. ... Protein Science. 14 (4): 1025-1038. doi:10.1110/ps.041131205. PMC 2253457 . PMID 15772309. Coronas, FV; de Roodt, Adolfo R.; ... Proteins: Structure, Function, and Bioinformatics. 60 (3): 401-411. doi:10.1002/prot.20509. PMID 15971207. "Potassium channel ...
*  Methylglyoxal pathway
RCSB Protein Data Base. 25 Apr. 2007 . "Methylglyoxal Synthase From Escherichia Coli." RCSB Protein Data Base. 24 Apr. 2007. ... RCSB Protein Data Base. 24 Apr. 2007. RCSB Protein Data Base. 30 Apr. 2007 .. ... RCSB Protein Data Base. 25 Apr. 2007 . Yun, M., C.-G. Park, J.-Y Kim, and H.-W. Park. "Structural Anayysis of Glyeraldehyde 3- ... Saadat, D., Harrison, D.H.T. "Methylglyoxal Synthase From Escherichia Coli." RCSB Protein Data Base. 24 Apr. 2007. ...
*  H.M. Krishna Murthy
wwPDB Statement on Retraction of PDB Entries". World Wide Protein Database. Retrieved 15 January 2013. 449 Citations maybe ... "UAB Statement on Protein Data Bank Issues". UAB. Retrieved 14 January 2013. ]Borrell, Brendan. "Fraud rocks protein community ... However, not all of the structures have been removed from the Protein Data Bank. The protein structures in question were 1BEF, ... Specifically, Murthy tried to pass some elements of the known protein 1TAQ as a new protein, 1CMW. When the misconduct inquiry ...
*  Exosome (vesicle)
"Urinary Exosome Protein Database". NHLBI. 2009-05-12. Retrieved 2009-10-01. Nilsson, J; Skog, J; Nordstrand, A; Baranov, V; ... An overview of molecules known to be present in exosomes is provided by the ExoCarta database. Exosomes contain RNA, proteins, ... The protein content of a single exosome, given certain assumptions of protein size and configuration, and packing parameters, ... Although the exosomal protein composition varies with the cell and tissue of origin, most exosomes contain an evolutionarily- ...
*  DiProDB
Protein database (disambiguation) Friedel, M.; Nikolajewa, S.; Suhnel, J.; Wilhelm, T. (2009). "DiProDB: a database for ... DiProDB is a database designed to collect and analyse thermodynamic, structural and other dinucleotide properties. ... 37 (Database): D37-D40. doi:10.1093/nar/gkn597. ISSN 0305-1048. PMC 2686603 . PMID 18805906. Main site. ...
*  PROSITE
... is a protein database. It consists of entries describing the protein families, domains and functional sites as well as ... Uniprot - the universal protein database, a central resource on protein information - PROSITE adds data to it. InterPro - a ... grouping data from databases of protein families, domains and functional sites - part of the data come from PROSITE. Protein ... PROSITE's uses include identifying possible functions of newly discovered proteins and analysis of known proteins for ...
*  Arylsulfatase B
Protein Data Base (PDB), Arylsulfatase structure. Genetics Home Reference, Arylsulfatase B function.. ...
*  Securigera varia
In an experiment involving the digestibility of crownvetch in sheep, it was found that the crude protein is 65.6% and the crude ... Natural Resources Conservation Service PLANTS Database. USDA. Retrieved 8 November 2015. OSC Seeds. (n.d.). Crownvetch. ... It consists of 21.7% crude protein and 22.2% crude fibre. ...
*  Cation diffusion facilitator
Integral membrane protein Ion channel Transporter Classification Database Protein superfamily Protein family Xiong A, Jayaswal ... A representative list of proteins belonging to the CDF family can be found in the Transporter Classification Database. ... These proteins exhibit an unusual degree of sequence divergence and size variation (300-750 residues). Eukaryotic proteins ... Most proteins from the family have six transmembrane helices, but MSC2 of S. cerevisiae) and Znt5 and hZTL1 of H. sapiens have ...