BEAST 2
PLOS Computational Biology. 15 (4): e1006650. Bibcode:2019PLSCB..15E6650B. doi:10.1371/journal.pcbi.1006650. PMC 6472827. PMID ... PLOS Computational Biology. 19 (7): e1011226. doi:10.1371/journal.pcbi.1011226. PMC 10381047. PMID 37463154. Official website v ... Systematic Biology. 67 (1): 170-174. doi:10.1093/sysbio/syx060. PMC 5925777. PMID 28673048. "Comprehensive BEAST Archive ...
SBGrid Consortium
PLOS Computational Biology. 8 (7): e1002598. Bibcode:2012PLSCB...8E2598M. doi:10.1371/journal.pcbi.1002598. PMC 3406002. PMID ... deployment and maintenance of a comprehensive set of software and computational tools that are useful in structural biology ... SBGrid's user-oriented community began to solidify in 2008 with its first user meeting: Quo Vadis Structural Biology ("Where is ... SBGrid provides the global structural biology community with support for research computing. Members of the SBGrid Consortium ...
Condensin
PLOS Computational Biology. 14 (6): e1006152. Bibcode:2018PLSCB..14E6152S. doi:10.1371/journal.pcbi.1006152. PMC 6005465. PMID ... Molecular Biology of the Cell. 30 (11): 1326-1338. doi:10.1091/mbc.E18-08-0487. PMC 6724606. PMID 30893010. Mascarenhas J, ... Journal of Cell Biology. 217 (7): 2309-2328. doi:10.1083/jcb.201801048. PMC 6028534. PMID 29632028. Yu HG, Koshland DE (2003 ... Molecular Biology and Evolution. 36 (10): 2195-2204. doi:10.1093/molbev/msz140. PMC 6759200. PMID 31270536. Csankovszki G, ...
Ebola vaccine
PLOS Computational Biology. 12 (9): e1005074. Bibcode:2016PLSCB..12E5074C. doi:10.1371/journal.pcbi.1005074. PMC 5025164. PMID ... Cheng F, Murray JL, Zhao J, Sheng J, Zhao Z, Rubin DH (September 2016). "Systems Biology-Based Investigation of Cellular ...
Protein secondary structure
Abrusán G, Marsh JA (December 2016). "Alpha Helices Are More Robust to Mutations than Beta Strands". PLOS Computational Biology ... Advances in Enzymology and Related Areas of Molecular Biology. Advances in Enzymology - and Related Areas of Molecular Biology ... Methods in Molecular Biology. Vol. 609. pp. 327-48. doi:10.1007/978-1-60327-241-4_19. ISBN 978-1-60327-240-7. PMID 20221928. ... Biology portal Folding (chemistry) Nucleic acid secondary structure Translation Structural motif Protein circular dichroism ...
Sara Del Valle
PLOS Computational Biology. 11 (5): e1004239. arXiv:1410.7716. Bibcode:2015PLSCB..11E4239H. doi:10.1371/journal.pcbi.1004239. ... Alongside the computational models, Del Valle has developed algorithms that can quantify their uncertainty. She was appointed ... As there is no historical data for SARS-CoV-2, the computational models developed by Del Valle were very different to those she ... During the COVID-19 pandemic, Del Valle worked on a computational model to describe the spread of COVID-19 around the United ...
Big data
PLOS Computational Biology. 11 (2): e1003904. Bibcode:2015PLSCB..11E3904V. doi:10.1371/journal.pcbi.1003904. PMC 4321985. PMID ... Computational social sciences - Anyone can use application programming interfaces (APIs) provided by big data holders, such as ... In health and biology, conventional scientific approaches are based on experimentation. For these approaches, the limiting ... The "V" model of big data is concerning as it centers around computational scalability and lacks in a loss around the ...
Trace amine-associated receptor
PLOS Computational Biology. 14 (1): e1005945. Bibcode:2018PLSCB..14E5945I. doi:10.1371/journal.pcbi.1005945. PMC 5783396. PMID ... Journal of Leukocyte Biology. 93 (3): 387-394. doi:10.1189/jlb.0912433. PMID 23315425. "TAAR2". International Union of Basic ...
List of Intelligent Systems for Molecular Biology keynote speakers
... on the subjects of bioinformatics and computational biology organised by the International Society for Computational Biology ( ... International Society for Computational Biology. Retrieved 27 October 2013. "ISMB". International Society for Computational ... Neshich, Goran; Bourne, Philip E.; Brunak, Søren (1 January 2006). "ISMB 2006". PLOS Computational Biology. 2 (2): e11. doi: ... Articles using small message boxes, Incomplete lists from October 2013, Bioinformaticians, Biology conferences, Computational ...
Holdase
PLOS Computational Biology. 16 (12): e1008460. Bibcode:2020PLSCB..16E8460D. doi:10.1371/journal.pcbi.1008460. PMC 7769611. PMID ... In molecular biology, holdases are a particular kind of molecular chaperones that assist the non-covalent folding of proteins ...
GenoCAD
PLOS Computational Biology. 5 (10): e1000529. Bibcode:2009PLSCB...5E0529C. doi:10.1371/journal.pcbi.1000529. PMC 2748682. PMID ... GenoCAD is one of the earliest computer assisted design tools for synthetic biology. The software is a bioinformatics tool ... Jurnal Teknologi, 63(1). Pedersen, M. (2010). Modular languages for systems and synthetic biology. GenoCAD.com Project page on ... SourceForge Tutorials and FAQs Peccoud Lab (Synthetic biology, Free bioinformatics software, Systems biology, Biotechnology). ...
M. Madan Babu
... where he was introduced to the field of computational biology. Babu obtained his PhD in computational genomics at the ... receptors and intrinsically disordered proteins using a combination of computational biology and experimental biology ... PLOS Computational Biology. 14 (6): e1006164. Bibcode:2018PLSCB..14E6164F. doi:10.1371/journal.pcbi.1006164. ISSN 1553-7358. ... Won the ISCB Innovator Award from the International Society for Computational Biology (ISCB) 2019: Won the EMBO Gold Medal 2021 ...
Substitution matrix
PLOS Computational Biology. 4 (10): e1000179. Bibcode:2008PLSCB...4E0179G. doi:10.1371/journal.pcbi.1000179. PMC 2527532. PMID ... In bioinformatics and evolutionary biology, a substitution matrix describes the frequency at which a character in a nucleotide ... Journal of Molecular Biology. 219 (3): 555-65. doi:10.1016/0022-2836(91)90193-A. PMC 7130686. PMID 2051488. Dayhoff, M. O.; ... Journal of Molecular Biology. 267 (4): 1026-38. CiteSeerX 10.1.1.44.1143. doi:10.1006/jmbi.1997.0924. PMID 9135128. Gong, ...
Christoph Bock
As of 2017[update], Bock serves on the editorial board of the Genome Biology journal. Bock, Christoph (2008). Computational ... In 2017, Bock was awarded the Overton Prize by the International Society for Computational Biology, for his significant ... "Genome Biology". Genome Biology. Retrieved 23 July 2017. (Articles with hCards, All articles with unsourced statements, ... PLOS Computational Biology. 13 (6): e1005559. Bibcode:2017PLSCB..13E5559F. doi:10.1371/journal.pcbi.1005559. PMC 5493286. PMID ...
BCPNN
PLOS Computational Biology. 6 (6): e1000803. Bibcode:2010PLSCB...6E0803L. doi:10.1371/journal.pcbi.1000803. PMC 2880555. PMID ... PLOS Computational Biology. 12 (5): e1004954. Bibcode:2016PLSCB..12E4954T. doi:10.1371/journal.pcbi.1004954. PMC 4877102. PMID ... Silverstein DN, Lansner A (2011). "Is attentional blink a byproduct of neocortical attractors?". Frontiers in Computational ... Computational Statistics & Data Analysis. 34 (4): 473-493. doi:10.1016/S0167-9473(99)00114-0. Fiebig F, Lansner A (January 2017 ...
Hammerhead ribozyme
PLOS Computational Biology. 7 (5): e1002031. Bibcode:2011PLSCB...7E2031P. doi:10.1371/journal.pcbi.1002031. PMC 3088659. PMID ... Molecular Biology. 10 (9): 708-712. doi:10.1038/nsb959. PMID 12881719. S2CID 52859654. De la Peña M; Gago S.; Flores R. (2003 ... Genome Biology. 17 (1): 135. doi:10.1186/s13059-016-1002-4. ISSN 1474-760X. PMC 4918200. PMID 27339130. de la Peña, Marcos; ... Current Opinion in Structural Biology. 6 (4): 527-533. doi:10.1016/S0959-440X(96)80119-9. PMID 8794164. Hean J, Weinberg MS ( ...
Angiotensin-converting enzyme 2
PLOS Computational Biology. 18 (3): e1009922. Bibcode:2022PLSCB..18E9922M. doi:10.1371/journal.pcbi.1009922. PMC 8920257. PMID ... Molecular Cell Biology. 23 (1): 3-20. doi:10.1038/s41580-021-00418-x. PMC 8491763. PMID 34611326. Hu Y, Liu L, Lu X (2021). " ... Methods in Molecular Biology. Vol. 1282. Springer New York. pp. 1-23. doi:10.1007/978-1-4939-2438-7_1. ISBN 978-1-4939-2437-0. ... Hansen SB, Yuan Z (March 2023). "Getting in on the action: New tools to see SARS-CoV-2 infect a cell". Cell Chemical Biology. ...
Help Cure Muscular Dystrophy
PLOS Computational Biology (2013). From Dedicated Grid to Volunteer Grid: Large Scale Execution of a Bioinformatics Application ... PLOS Computational Biology (2009). Identification of Protein Interaction Partners and Protein-Protein Interaction Sites. ... PLOS Computational Biology. 5 (1): e1000267. Bibcode:2009PLSCB...5E0267E. doi:10.1371/journal.pcbi.1000267. ISSN 1553-7358. PMC ... PLOS Computational Biology. 9 (12): e1003369. Bibcode:2013PLSCB...9E3369L. doi:10.1371/journal.pcbi.1003369. ISSN 1553-7358. ...
Plasmid partition system
PLOS Computational Biology. 10 (12): e1004009. Bibcode:2014PLSCB..10E4009I. doi:10.1371/journal.pcbi.1004009. ISSN 1553-7358. ... Current Opinion in Structural Biology. 22 (1): 72-9. doi:10.1016/j.sbi.2011.11.001. PMC 4824291. PMID 22153351. Chen Y, ... Annual Review of Cell and Developmental Biology. 31: 171-199. doi:10.1146/annurev-cellbio-100814-125211. ISSN 1530-8995. PMC ...
Electronic lab notebook
PLOS Computational Biology. 11 (9): e1004385. Bibcode:2015PLSCB..11E4385S. doi:10.1371/journal.pcbi.1004385. ISSN 1553-7358. ... Taylor, K. T. (2006). "The status of electronic laboratory notebooks for chemistry and biology". Current Opinion in Drug ... Schnell, Santiago (2015-09-10). "Ten Simple Rules for a Computational Biologist's Laboratory Notebook". ...
Spike response model
PLOS Computational Biology. 11 (6): e1004275. Bibcode:2015PLSCB..11E4275P. doi:10.1371/journal.pcbi.1004275. ISSN 1553-7358. ... PLOS Computational Biology. 13 (4): e1005507. arXiv:1611.00294. Bibcode:2017PLSCB..13E5507S. doi:10.1371/journal.pcbi.1005507. ... PLOS Computational Biology. 8 (10): e1002711. Bibcode:2012PLSCB...8E2711N. doi:10.1371/journal.pcbi.1002711. ISSN 1553-7358. ... Computational Neuroscience. 58: 155-166. arXiv:1909.10007. doi:10.1016/j.conb.2019.08.003. ISSN 0959-4388. PMID 31590003. S2CID ...
Viral phylodynamics
PLOS Computational Biology. 3 (2): e29. Bibcode:2007PLSCB...3...29L. doi:10.1371/journal.pcbi.0030029. PMC 1797821. PMID ... PLOS Computational Biology. 9 (3): e1002947. doi:10.1371/JOURNAL.PCBI.1002947. ISSN 1553-734X. PMC 3605911. PMID 23555203. ... PLOS Computational Biology. 5 (9): e1000520. Bibcode:2009PLSCB...5E0520L. doi:10.1371/journal.pcbi.1000520. PMC 2740835. PMID ... PLOS Computational Biology. 8 (3): e1002413. Bibcode:2012PLSCB...8E2413L. doi:10.1371/journal.pcbi.1002413. PMC 3297558. PMID ...
Gene regulatory circuit
Computational Methods in Synthetic Biology, Methods in Molecular Biology, New York, NY: Springer, vol. 1244, pp. 259-276, doi: ... PLOS Computational Biology. 3 (2): e15. Bibcode:2007PLSCB...3...15C. doi:10.1371/journal.pcbi.0030015. ISSN 1553-7358. PMC ... Having constructed a computational model of the natural circuit of interest, one can use the model to make testable predictions ... Synthetic Biology Meets Plant Metabolism. 273: 13-22. doi:10.1016/j.plantsci.2018.04.005. ISSN 0168-9452. PMID 29907304. S2CID ...
Caudipteryx
PLOS Computational Biology. 15 (5). e1006846. Bibcode:2019PLSCB..15E6846T. doi:10.1371/journal.pcbi.1006846. PMC 6497222. PMID ...
Gene Wiki
PLOS Computational Biology. 16 (2): e1007652. Bibcode:2020PLSCB..16E7652Z. doi:10.1371/journal.pcbi.1007652. PMC 7048313. PMID ... PLOS Biology. 6 (7): e175. doi:10.1371/journal.pbio.0060175. PMC 2443188. PMID 18613750. Huss JW, Orozco C, Goodale J, Wu C, ...
Enzyme promiscuity
PLOS Computational Biology. 2 (6): e69. Bibcode:2006PLSCB...2...69W. doi:10.1371/journal.pcbi.0020069. PMC 1480538. PMID ... arXiv:q-bio/0505037. Bibcode:2005BpJ....89.1183M. doi:10.1529/biophysj.104.057158. PMC 1366603. PMID 15923233. Yasutake Y, Yao ... BMC Evolutionary Biology. 7 (Suppl 2): S3. doi:10.1186/1471-2148-7-S2-S3. PMC 1963480. PMID 17767731. Baba T, Ara T, Hasegawa M ... Journal of Molecular Biology. 344 (2): 325-33. doi:10.1016/j.jmb.2004.09.035. PMID 15522288. Perona JJ, Hadd A (November 2012 ...
Force spectrum microscopy
PLOS Computational Biology. 10 (11): e1003959. Bibcode:2014PLSCB..10E3959M. doi:10.1371/journal.pcbi.1003959. PMC 4238946. PMID ... Journal of Cell Biology. 183 (4): 583-587. doi:10.1083/jcb.200806149. PMC 2582900. PMID 19001127. MacKintosh, F.C. (2012). " ... Nature Reviews Molecular Cell Biology. 10 (11): 778-790. doi:10.1038/nrm2786. PMC 2834236. PMID 19851336. Parry, BR; Surovtsev ...
Leukocyte extravasation
PLOS Computational Biology. 15 (5): e1006395. arXiv:1811.09326. Bibcode:2019PLSCB..15E6395E. doi:10.1371/journal.pcbi.1006395. ... Journal of Leukocyte Biology. 100 (5): 1027-1035. doi:10.1189/jlb.3MA0216-087R. PMC 5069089. PMID 27190303. Aplin AE, Howe A, ... The Journal of Cell Biology. 166 (6): 913-23. doi:10.1083/jcb.200403144. PMC 2172126. PMID 15364963. Thomas WE, Trintchina E, ... The Journal of Cell Biology. 166 (6): 913-23. doi:10.1083/jcb.200403144. PMC 2172126. PMID 15364963. Thomas WE, Trintchina E, ...
Human Microbiome Project
PLOS Computational Biology. 8 (7): e1002606. Bibcode:2012PLSCB...8E2606F. doi:10.1371/journal.pcbi.1002606. PMC 3395616. PMID ... PLOS Computational Biology. 8 (6): e1002358. Bibcode:2012PLSCB...8E2358A. doi:10.1371/journal.pcbi.1002358. PMC 3374609. PMID ... Biology portal Environmental microbiology Genome project Genomics Human microbiome Gut flora Oral microbiology Skin flora ... Genome Biology. 12 (5): R50. doi:10.1186/gb-2011-12-5-r50. PMC 3271711. PMID 21624126. Sczesnak A, Segata N, Qin X, Gevers D, ...
Integrated information theory
The latest version of the theory, labeled IIT 4.0 (accepted for publication after peer review in PLoS Computational biology, ... PLOS Computational Biology. 15 (2): e1006807. Bibcode:2019PLSCB..15E6807T. doi:10.1371/journal.pcbi.1006807. PMC 6382174. PMID ... PLOS Computational Biology. 10 (5): e1003588. Bibcode:2014PLSCB..10E3588O. doi:10.1371/journal.pcbi.1003588. PMC 4014402. PMID ... PLOS Computational Biology. 14 (4): e1006114. arXiv:1608.03461. Bibcode:2018PLSCB..14E6114M. doi:10.1371/journal.pcbi.1006114. ...
Florida State University College of Arts and Sciences
OA Molecular and Cell Biology. Open Access Publishing London. Computational Biology Journal. Hindawi Limited. Bowman, William D ... The Department of Biological Science includes faculty in cellular and molecular biology, computational biology, evolution and ... in Computational Science, a M.S. in Computational Science, Minor in Computational Science, P.H.D. in Fire Dynamics, and a Ph.D ... "FSU Biology - Main Page". www.bio.fsu.edu. Retrieved 2021-03-24. "Sir Harold W. Kroto". Florida State University. Archived from ...