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*  Ligand binding assay
... and it is possible that there is more than one specific binding site for one ligand. Non specific binding refers to the binding ... binding-assay.com/binding-assay-types/solid-phase-assays/on-bead-assays Moss, ed. by Tom (2001). "Filter-Binding Assays". DNA- ... If the ligand were to have bound to multiple sites that have differing radioligand affinities, then the Scatchard plot would ... Ligand binding assays (LBA) is an assay, or an analytic procedure, whose procedure or method relies on the binding of ligand ...
*  Protein primary structure
This is used to strengthen the binding to "hard" metal ions such as calcium. ADP-ribosylation The large ADP-ribosyl group can ... As with phosphorylation, sulfation adds a negative charge to a previously neutral site. prenylation and palmitoylation − C ( = ... The phosphorylated tyrosines are often used as "handles" by which proteins can bind to one another, whereas phosphorylation of ... Functionally, however, the acetylation of lysine residues is used to regulate the binding of proteins to nucleic acids. The ...
*  Binding site
When more than one type of ligand can bind to a binding site, competition ensues. Binding sites also exhibit chemical ... Binding sites on proteins can sometimes recognize other proteins. When a binding site of one protein identifies with another ... A more specific type of binding site is the transcription factor binding site present on DNA. Short, recurring patterns in DNA ... Binding sites also exist on antibodies as specifically coded regions that bind antigens based upon their structure. Several ...
*  DNA binding site
DNA binding sites are a type of binding site found in DNA where other molecules may bind. DNA binding sites are distinct from ... The sum of DNA binding sites of a specific transcription factor is referred to as its cistrome. DNA binding sites also ... It has been reported that some binding sites have potential to undergo fast evolutionary change. DNA binding sites can be ... Thus, we can distinguish between transcription factor-binding sites, restriction sites and recombination sites. Some authors ...
*  NTP binding site
... binding sites, it interacts with the bound nucleotide's phosphoryl groups. For the binding site to be able to bind a nucleotide ... An NTP binding site is a type of binding site found in nucleoside monophosphate (NMP) kinases, N can be adenosine or guanosine ... the nucleotide must be complex bound to Mg2+ or Mn2+. Nucleotide binding will cause conformational changes in the protein ...
*  Primer binding site
A PCR primer binding site is a site where a polymerase chain reaction (PCR) primer binds, to prime duplication of a complement ... A primer binding site is a region of a nucleotide sequence where an RNA or DNA single-stranded primer binds to start ... The HIV primer binding site is a structured RNA element in the genomes of retroviruses to which tRNA binds to initiate reverse ... The primer binding site is on one of the two complementary strands of a double-stranded nucleotide polymer, in the strand which ...
*  PyrR binding site
The PyrR binding site is an RNA element that is found upstream of a variety of genes involved in pyrimidine biosynthesis and ... When the protein binds, a downstream terminator hairpin forms, repressing transcription of biosynthesis genes. Bonner, ER; ... The RNA structure permits binding of PyrR protein which regulates pyrimidine biosynthesis in Bacillus subtilis. ... Page for PyrR binding site at Rfam. ...
*  Ribosome-binding site
A ribosome binding site, or ribosomal binding site, (RBS) is a sequence of nucleotides upstream of the start codon of an mRNA ... "Ribosomal Binding Site Sequence Requirements". www.thermofisher.com. Retrieved 2015-10-16. "Help:Ribosome Binding Site - parts. ... it is not considered a ribosome binding site. Eukaryotic ribosomes are known to bind to transcripts in a mechanism unlike the ... "Ribosome binding site recognition using neural networks". Genetics and Molecular Biology. 27 (4): 644-650. doi:10.1590/S1415- ...
*  AP-1 Binding Site
The AP-1 binding site, also known as the AP-1 promoter site, is a DNA nucleotide sequence to which AP-1 transcription factors ... The AP-1 binding site, in humans, has a nucleotide sequence of ATGAGTCAT. AP-1 Nucleotide Sequence. ...
*  Alpha operon ribosome binding site
The alpha operon ribosome binding site in bacteria is surrounded by this complex pseudoknotted RNA structure. Translation of ... Page for Alpha operon ribosome binding site at Rfam. ... acts as a translational repressor by binding to the nested ...
*  Transcription factor binding site databases
The application of ChIP-seq methods has reliably discovered transcription factor binding sites and histone modification sites. ... Comprehensive List of transcription factor binding sites (TFBSs) databases based on ChIP-seq data as follows: Park, Peter J. (1 ... Ziebarth, Jesse D.; Bhattacharya, Anindya; Cui, Yan (1 January 2013). "CTCFBSDB 2.0: a database for CTCF-binding sites and ... update of the open-access database of transcription factor binding profiles and its web framework". Nucleic Acids Research. doi ...
*  Rous sarcoma virus (RSV) primer binding site (PBS)
This family represents a structured region around the Rous sarcoma virus (RSV) primer binding site (PBS). This region is known ... Page for Rous sarcoma virus (RSV) primer binding site (PBS) at Rfam. ...
*  Membrane-bound transcription factor site-2 protease
... , or site-2 protease (S2P) for short, is an enzyme (EC 3.4.24.85) encoded by ... Membrane-bound transcription factor site-1 protease Brown MS, Goldstein JL (1999). "A proteolytic pathway that controls the ... SREBP site 2 protease at the US National Library of Medicine Medical Subject Headings (MeSH) S2P endopeptidase at the US ... Known substrates include sterol regulatory element-binding protein (SREBP)-1, SREBP-2 and forms of the transcriptional ...
*  Membrane-bound transcription factor site-1 protease
... , or site-1 protease (S1P) for short, also known as subtilisin/kexin-isozyme ... Membrane-bound transcription factor site-2 protease GRCh38: Ensembl release 89: ENSG00000140943 - Ensembl, May 2017 GRCm38: ... Membrane-bound transcription factor peptidase, site 1". Brown MS, Goldstein JL (1999). "A proteolytic pathway that controls the ... site-1 protease at the US National Library of Medicine Medical Subject Headings (MeSH) This article incorporates text from the ...
*  6-Diazo-5-oxo-L-norleucine
Pinkus LM (1977). "Glutamine binding sites". Meth. Enzymol. Methods in Enzymology. 46: 414-27. doi:10.1016/S0076-6879(77)46049- ... Due to its similarity to glutamine it can enter catalytic centres of these enzymes and inhibits them by covalent binding, or ...
*  CCDC82
"Transcription Factor Binding Sites". ElDorado. Genomatix. "SAPS". Biology Workbench. SDSU. [permanent dead link] "Large-scale ... CCDC82 has several predicted phosphorylation sites. There are 32 predicted serine phosphorylation sites, 5 threonine, and 3 ... Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M (November 2006). "Global, in vivo, and site-specific ...
*  C7orf43
... including binding sites for zinc fingers and Kruppel-like transcription factors. The top 20 transcription binding sites as ... "C7orf43-promoter binding sites". Genomatix. Retrieved 5 April 2015. "Uncharacterized protein C7orf43 [Homo sapiens]". NCBI ... C7orf43 has three phosphorylated sites, Ser 517, Thr 541 and, Ser 546. All three sites are relatively well-conserved throughout ... There are several transcription factor binding sites located in this promoter, ...
*  Anti-dsDNA antibodies
Birmingham: Binding Site. ISBN 0-7044-2437-1. Slater NG, Cameron JS, Lessof MH (September 1976). "The Crithidia luciliae ... Serum is incubated with the beads and in the presence of anti-dsDNA antibodies, or any other ANA, the antibodies will bind and ... If anti-dsDNA antibodies are present, incubation of serum and the microarray allow for binding and the dots can then be ... Upon incubation with serum containing anti-dsDNA antibodies, the antibodies will bind to the DNA and can then be visualised ...
*  M. Vijayan
Madhusudan; Vijayan, M. (July 1992). "Additional binding sites in lysozyme. X-ray analysis of lysozyme complexes with ... side chain conformation in proteins and additional binding sites in lysozyme. Vijayan has published more than 260 peer reviewed ... M. Vijayan profile on Biomed Experts Mamannamana Vijayan publications list M. Vijayan home page at Indian Institute of Science ... The specific systems studied by him include RecA, RuvA, uracil DNA glycosylase, single stranded DNA binding protein, ribosome ...
*  Anti-neutrophil cytoplasmic antibody
Birmingham: The Binding Site. ISBN 0704485109. Savige, J; Davies, D; Falk, RJ; Jennette, JC; Wiik, A (Mar 2000). " ...
*  Sequence motif
For example, many DNA binding proteins that have affinity for specific DNA binding sites bind DNA in only its double-helical ... "DNA binding sites: representation and discovery". Bioinformatics. 16 (1): 16-23. doi:10.1093/bioinformatics/16.1.16. PMID ... 34 (Web Server issue): W369-373. doi:10.1093/nar/gkl198. PMC 1538909 . PMID 16845028. Weirauch; et al. (2013). "Evaluation of ... An example is the N-glycosylation site motif: Asn, followed by anything but Pro, followed by either Ser or Thr, followed by ...
*  Nitric oxide synthase
The FMN binding domain is homologous to flavodoxins, and the two domain fragment containing the FAD and NADPH binding sites is ... The oxygenase domain is a unique extended beta sheet cage with binding sites for heme and pterin. NOSs can be dimeric, ... Liu Q, Gross SS (1996). "Binding sites of nitric oxide synthases". Meth. Enzymol. 268: 311-24. doi:10.1016/S0076-6879(96)68033- ... which is linked in the middle of the protein to a calmodulin-binding domain. Binding of calmodulin appears to act as a " ...
*  Gary Stormo
Stormo, G. D. (1 January 2000). "DNA binding sites: representation and discovery". Bioinformatics. 16 (1): 16-23. doi:10.1093/ ... The first use of PWMs was in the discovery of RNA sites that function as translation initiation sites. The advantages of PWMs ... algorithm to distinguish translational initiation sites in E. coli". Nucleic Acids Research. 10 (9): 2997-3011. doi:10.1093/nar ... work involves analysis of these interactions and developing pattern recognition algorithms to discover regulatory sites in DNA ...
*  1-phosphofructokinase
There are two ATP binding sites; a substrate site where the phosphate transfer occurs, and an allosteric site where allosteric ... In addition to the catalytic binding sites, there are 4 additional binding sites for allosteric regulation. 1- ... AMP and ADP are both positive effectors of 1-phosphofructokinase and bind allosterically to activate the reaction. This ... 1-Phosphofructokinase is a tetramer of 4 identical subunits that each have a catalytic site. ...
*  Position weight matrix
Erill I, O'Neill MC (2009). "A reexamination of information theory-based methods for DNA-binding site identification". BMC ... The score is greater than 0 if it is more likely to be a functional site than a random site, and less than 0 if it is more ... 2003). "MATCHTM: a tool for searching transcription factor binding sites in DNA sequences". Nucleic Acids Research. 31 (13): ... Stormo, G. D. (1 January 2000). "DNA binding sites: representation and discovery". Bioinformatics. 16 (1): 16-23. doi:10.1093/ ...
*  UCKL1
2002). "Epstein-Barr virus encoded nuclear protein EBNA-3 binds a novel human uridine kinase/uracil phosphoribosyltransferase ... 2006). "A probability-based approach for high-throughput protein phosphorylation analysis and site localization". Nat. ...
*  Cannabidiolic acid synthase
CBDA synthase has four binding sites; two for FAD and two for the substrate. Cannabidiolic acid synthase catalyses the ... It covalently binds FAD, and does not require coenzymes, molecular oxygen, hydrogen peroxide, or metal ion cofactors for the ...