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*  Molecular cloning
Many useful proteins are currently available as recombinant products. These include--(1) medically useful proteins whose ... When bacterial cells are used as host organisms, the selectable marker is usually a gene that confers resistance to an ... Modern bacterial cloning vectors (e.g. pUC19 and later derivatives including the pGEM vectors) use the blue-white screening ... Obtaining the molecular clone of a gene can lead to the development of organisms that produce the protein product of the cloned ...
*  YopR bacterial protein domain
Hueck CJ (June 1998). "Type III protein secretion systems in bacterial pathogens of animals and plants". Microbiol. Mol. Biol. ... This Yop protein is unusual in that it is released to the extracellular environment rather than injected directly into the ... Proteins in this entry are type III secretion system effectors. They are named differently in different species and in Yersinia ... The type III secretion system is of great interest, as the YopR protein domain plays an important role. The type III secretion ...
*  YecM bacterial protein domain
It is a conserved, hypothetical protein with sequence homologues found exclusively in bacteria. Several bacterial YecM proteins ... This comparison suggests that YecM may be a metal-binding protein and therefore may function as an enzyme. The protein domain, ... However, YecM structural homologues reveal that all the proteins bind a divalent metal cation. ... In molecular biology, YecM refers to a protein domain found in Escherichia coli. ...
*  Bacterial effector protein
"Interactions of bacterial effector proteins with host proteins". Current Opinion in Immunology. 19 (4): 392-401. doi:10.1016/j. ... A database of predicted bacterial effectors. Includes an interactive server to predict effectors. Bacterial Effector Proteins ... Bacterial effectors are proteins secreted by pathogenic bacteria into the cells of their host, usually using a type 3 secretion ... "Bacterial Effector Binding to Ribosomal Protein S3 Subverts NF-κB Function". PLoS Pathogens. 5 (12): e1000708. doi:10.1371/ ...
*  Bacterial binding protein-dependent transporter
Bacterial binding protein-dependent transport systems, are multicomponent systems typically composed of a periplasmic substrate ... Saurin W, Kaster W, Dassa E (June 1994). "Bacterial binding protein-dependent permeases: characterization of distinctive ... one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins ... It has been shown, that most of these proteins contain a conserved region located about 80 to 100 residues from their C- ...
*  YadA bacterial adhesin protein domain
YadA is a collagen-binding outer membrane protein. It forms the fibrillar matrix on the bacterial cell surface. This aids cell ... In molecular biology, YadA is a protein domain which is short for Yersinia adhesin A. These proteins have strong sequence and ... YadA is a homotrimeric outer membrane protein which forms part of the fibrillar matrix. Simplistically, this means the protein ... The Eib immunoglobulin-binding proteins from Escherichia coli were third, followed by the DsrA proteins of Haemophilus ducreyi ...
*  Bacterial ice-nucleation proteins
... is a family of proteins that enable Gram-negative bacteria to promote nucleation of ice at ... The primary structure of the proteins contains a highly repetitive domain that dominates the sequence. The domain comprises a ... Gurian-Sherman D, Lindow SE (1993). "Bacterial ice nucleation: significance and molecular basis". FASEB J. 7 (14): 1338-1343. ... relatively high temperatures (above -5C). These proteins are localised at the outer membrane surface and can cause frost damage ...
*  Bacterial DNA binding protein
In molecular biology, bacterial DNA binding proteins are a family of small, usually basic proteins of about 90 residues that ... Research suggests that bacterial DNA binding protein has an important role during DNA replication; the protein is involved in ... These proteins participate in all DNA-dependent functions; in these processes, bacterial DNA binding proteins have an ... Initially, bacterial DNA binding proteins were thought to help stabilize bacterial DNA. Currently, many more functions of ...
*  Toxic shock syndrome toxin
2012). "Bacterial Protein Toxins". Todar's Online Textbook of Bacteriology. Madison, Wisconsin. Edwin, Chitra, Parsonnet, ... Based on studies of various mutations of the protein it appears that the superantigenic and lethal portions of the protein are ... This three-dimensional structure of the TSST-1 protein was determined by purifying the crystals of the protein. The two domains ... which is why it is an important factor in menstrual TSS When the protein is translated, it is in a pro-protein form, and can ...
*  Neokaryotes
"Bacterial proteins pinpoint a single eukaryotic root". Proceedings of the National Academy of Sciences. 112 (7): E693-E699. doi ... Cavalier-Smith, Thomas (2017-09-05). "Kingdom Chromista and its eight phyla: a new synthesis emphasising periplastid protein ...
*  Plant
"Bacterial proteins pinpoint a single eukaryotic root". Proceedings of the National Academy of Sciences. 112 (7): E693-E699. doi ... Goyal, K., Walton, L. J., & Tunnacliffe, A. (2005). "LEA proteins prevent protein aggregation due to water stress". Biochemical ... protein expression is induced by stresses and protects other proteins from aggregation as a result of desiccation and freezing ... Plants protect themselves from frost and dehydration stress with antifreeze proteins, heat-shock proteins and sugars (sucrose ...
*  Eukaryote
"Bacterial proteins pinpoint a single eukaryotic root". Proceedings of the National Academy of Sciences. 112 (7): E693-E699. doi ... Motor proteins of microtubules, e.g., dynein or kinesin and actin, e.g., myosins provide dynamic character of the network. ... From a consortium of bacterial and archaeal DNA originated the nuclear genome of eukaryotic cells. Spirochetes gave rise to the ... Harper, J. T.; Waanders, E.; Keeling, P. J. (2005). "On the monophyly of chromalveolates using a six-protein phylogeny of ...
*  Orthokaryotes
"Bacterial proteins pinpoint a single eukaryotic root". Proceedings of the National Academy of Sciences. 112 (7): E693-E699. doi ... Cavalier-Smith, Thomas (2017-09-05). "Kingdom Chromista and its eight phyla: a new synthesis emphasising periplastid protein ... a new synthesis emphasising periplastid protein targeting, cytoskeletal and periplastid evolution, and ancient divergences". ...
*  Bikont
"Bacterial proteins pinpoint a single eukaryotic root". Proceedings of the National Academy of Sciences. 112 (7): E693-E699. doi ... encode a single protein with two functions. The genes are separately translated in unikonts. Some research suggests that a ...
*  Amoebozoa
2015). "Bacterial proteins pinpoint a single eukaryotic root". Proceedings of the National Academy of Sciences. 112: E693-9. ... It is important to differentiate between amoebiasis and bacterial colitis. The preferred diagnostic method is through faecal ...
*  List of Protein subcellular localization prediction tools
Bhasin, M; Garg, A; Raghava, G. P (2005). "PSLpred: Prediction of subcellular localization of bacterial proteins". ... doi:10.1093/protein/gzh037. PMID 15115854. Bendtsen, J. D; Kiemer, L; Fausbøll, A; Brunak, S (2005). "Non-classical protein ... These software related to protein structure prediction may also appear in lists of protein structure prediction software. ... Rice and Maize Proteins: The Compendium of Crop Proteins with Annotated Locations (cropPAL)". Plant and Cell Physiology. 57 (1 ...
*  Effective (database)
Effective is a database of predicted bacterial secreted proteins. secreted proteins Jehl, Marc-André; Arnold Roland; Rattei ... a database of predicted secreted bacterial proteins". Nucleic Acids Res. England. 39 (Database issue): D591-5. doi:10.1093/nar/ ...
*  Bacteriocin
Farkas-Himsley H, Freedman J, Read SE, Asad S, Kardish M (1991). "Bacterial proteins cytotoxic to HIV-1-infected cells". AIDS. ... They are modular proteins between 20 and 90 kDa in size. They often consist of a receptor binding domain, a translocation ... 10 kDa) protein bacteriocins. This class is subdivided in two subclasses: subclass IIIa or bacteriolysins and subclass IIIb. ... Farkas-Himsley H, Hill R, Rosen B, Arab S, Lingwood CA (1995). "The bacterial colicin active against tumor cells in vitro and ...
*  BYKdb
The Bacterial protein tyrosine-kinase database (BYKdb) is a specialized database of computer-annotated bacterial tyrosine- ... the Bacterial protein tYrosine Kinase database". Nucleic Acids Res. England. 40 (Database issue): D321-4. doi:10.1093/nar/ ...
*  Fiona Brinkman
This method aids the prediction of cell surface and secreted proteins in a bacterial cell that may be suitable drug targets, ... Gardy, J.L., and F.S.L. Brinkman (2006). Methods for predicting bacterial protein subcellular localization. Nature Reviews ... Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. ... She is noted for developing PSORTb, the most precise method available for computational protein subcellular localization ...
*  Cholesterol-dependent cytolysin
In Alouf, J. E. & Popoff, M. R. (Eds.) The Comprehensive Sourcebook of Bacterial Protein Toxins. 3rd ed., pp. 643-658, Oxford, ... of alpha-helical regions to amphipathic beta-strands that is initiated by protein-lipid interactions or protein-protein ... Some CDC protein crystal structures available in RCSB include: The mechanism of pore formation of perfingolysin O (PFO; TC# 1.C ... The pore being ~250 Å in diameter is large enough to allow the loss of amino acids, nucleotides, small and large proteins, as ...
*  GroES
"Homologous plant and bacterial proteins chaperone oligomeric protein assembly". Nature. 333 (6171): 330-4. doi:10.1038/333330a0 ... Heat shock 10 kDa protein 1 (Hsp10) also known as chaperonin 10 (cpn10) or early-pregnancy factor (EPF) is a protein that in ... GroES Protein at the US National Library of Medicine Medical Subject Headings (MeSH) 3D macromolecular structures of GroES in ... Lee KH, Kim HS, Jeong HS, Lee YS (October 2002). "Chaperonin GroESL mediates the protein folding of human liver mitochondrial ...
*  TCP-1/cpn60 chaperonin family
"Homologous plant and bacterial proteins chaperone oligomeric protein assembly". Nature. 333 (6171): 330-334. doi:10.1038/ ... The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, ... This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. The assembly of proteins ... the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although ...
*  NhaB family
Only Gram-negative bacterial proteins have been functionally characterized. The E. coli NhaB is 58% identical to the ... Although the latter protein is predicted to exhibit 10 TMSs, construction of NhaB-phoA fusions led to evidence for a 9 TMS ... NhaB homologues also exhibit a region with limited sequence similarity to a 46 kDa membrane protein of unknown function from ... A representative list of proteins belonging to the NhaB family can be found in the Transporter Classification Database. NhaB ...
*  R. John Ellis
"Homologous plant and bacterial proteins chaperone oligomeric protein assembly". Nature. 333 (6171): 330-334. doi:10.1038/ ... 1997: Appointed Academic Visitor for four years at University of Oxford to work on protein folding with Professor Chris M. ... Blair, G. E.; Ellis, R. J. (1973). "Protein synthesis in chloroplasts. I. Light-driven synthesis of the large subunit of ... van den Berg, B.; Wain, R.; Dobson, C. M.; Ellis, R. J. (2000). "Macromolecular crowding perturbs protein refolding kinetics: ...
*  Phage display
... interacting proteins or protein fragments. The use of a helper phage can be eliminated by using 'bacterial packaging cell line ... Phage display is a laboratory technique for the study of protein-protein, protein-peptide, and protein-DNA interactions that ... a gene encoding a protein of interest is inserted into a phage coat protein gene, causing the phage to "display" the protein on ... characterize small molecules-protein interactions and map protein-protein interactions. Users can use three dimensional ...
*  Chaperonin ATPase
"Homologous plant and bacterial proteins: chaperone oligomeric protein assembly". Nature. 333 (6171): 330-334. doi:10.1038/ ... Lubber, T.H.; Donaldson, G.K.; Viitanen, P.V.; Gatenby, A.A. (1989). "Several proteins imported into chloroplasts form stable ...