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*  Exitron
... splicing affects 3.3% of Arabidopsis protein coding genes. 11% of intron regions were composed of exitrons and 3.7% of ... When exitrons are spliced out of a sequence, it has resulted in internally deleted proteins and affected protein domains, ... The same sequence within a pre mRNA strand can be considered an intron or exon depending on the desired protein to be produced ... As a result, different final mRNA sequences are generated and a large variety of proteins can be made from one single gene. ...
*  Signal transduction
"Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein ... Other activated proteins interact with adaptor proteins that facilitate signaling protein interactions and coordination of ... most commonly protein phosphorylation catalysed by protein kinases, which ultimately results in a cellular response. Proteins ... Knepper, Caleb; Savory, Elizabeth A.; Day, Brad (2011-05-01). "Arabidopsis NDR1 Is an Integrin-Like Protein with a Role in ...
*  PPP2R1A
... regulatory subunit gene family of Arabidopsis protein phosphatase 2A". Eur. J. Biochem. 260 (1): 127-136. doi:10.1046/j.1432- ... Lubert EJ, Hong Y, Sarge KD (2001). "Interaction between protein phosphatase 5 and the A subunit of protein phosphatase 2A: ... 1997). "Direct activation of protein phosphatase-2A0 by HIV-1 encoded protein complex NCp7:vpr". FEBS Lett. 401 (2-3): 197-201 ... This gene encodes a constant regulatory subunit of protein phosphatase 2. Protein phosphatase 2 is one of the four major Ser/ ...
*  David Siderovski
Siderovski's 2003 report of the cloning of AtRGS1, the first plant RGS protein identified (from the model organism Arabidopsis ... RGS proteins are now considered key desensitizers of heterotrimeric G protein signaling and, as such, as new drug discovery ... Before the discovery of RGS proteins, the duration of heterotrimeric G-protein signaling was thought to be modulated by only ... RGS proteins act as GTPase-accelerating proteins or "GAPs" for Gα-GTP; e.g., ref.). Discovery of a superfamily of RGS domain- ...
*  Sequence homology
However it can fully substitute the much simpler Arabidopsis protein, if transferred from algae to plant genome by means of ... For instance, the plant Flu regulatory protein is present both in Arabidopsis (multicellular higher plant) and Chlamydomonas ( ... Deep homology EggNOG (database) OrthoDB Orthologous MAtrix (OMA) Protein family Protein superfamily TreeFam Syntelog "Clustal ... Characterization of the proteins shows that, compared to RocG, GudB's enzymatic activity is highly dependent on glutamate and ...
*  Reticulon
The genome Arabidopsis thaliana has at least 19 reticulon like proteins, and 15 of them have been explicitly identified. One ... Additionally, reticulons may be used to shape coated protein vesicles by interacting with a component of the adaptor protein ... The family of vertebrate proteins are called reticulons, and all other located eukaryotes are called reticulon-like proteins. ... Through Arabidopsis protein microarrays the FLAGELIN-SENSITIVE2 (FLS2) receptor, a PRR, was tagged to identify reticulon-like ...
*  UVR8
"Perception of UV-B by the Arabidopsis UVR8 protein". Science. 332 (6025): 103-6. doi:10.1126/science.1200660. PMID 21454788. ... UVR8 is a β-propeller protein with 7 blade-shaped β-sheets. It shares sequence homology with mammalian proteins involved in ... UV-B resistance 8 (UVR8) also known as ultraviolet-B receptor UVR8 is an UV-B - sensing protein found in plants and possibly ... identified as a crucial mediator of a plant's response to UV-B in Arabidopsis thaliana containing a mutation in this protein. ...
*  Gerd Jürgens
The Arabidopsis KNOLLE protein is a cytokinesis-specific syntaxin. J. Cell Biol. 139, 1485-1493. Geldner, N., Anders, N., ... His laboratory discovered and characterized the protein KNOLLE, which is required for cytokinesis and was the first protein ... Lukowitz, W., Mayer, U., Jürgens, G. (1996). Cytokinesis in the Arabidopsis embryo involves the syntaxin-related KNOLLE gene ... Using the genetically-tractable plant Arabidopsis thaliana he conducted the first forward genetic screen (using mutagenesis ...
*  Seipin
"Arabidopsis SEIPIN Proteins Modulate Triacylglycerol Accumulation and Influence Lipid Droplet Proliferation". The Plant Cell. ... The sub-cellular location of GFP-LC3 and mutated seipin proteins highly overlap. Moreover, these seipin proteins can diffuse ... At protein level, seipin is expressed in cortical neurons in the frontal lobes, as well as motor neurons in the spinal cord. It ... The seipin protein can also have a modification residue, that can transform the 289' and 372' serine into a phosphoserine, an ...
*  Arabinogalactan protein
"The classical arabinogalactan protein gene family of arabidopsis". The Plant Cell. 12 (9): 1751-68. doi:10.1105/tpc.12.9.1751. ... Clade 7 proteins contain both GalT and galectin domains, while Clade 10 proteins contain a GalT-specific domain. The galectin ... AGPs are widely distributed in plants and typically comprise only 2 to 10% protein by weight. The protein family has been ... AGPs contains protein backbone of varied lengths. In some plant cells, the length of the mature protein backbone is only 10-13 ...
*  B3 domain
"Structure of the B3 domain from Arabidopsis thaliana protein At1g16640". Protein Sci. 14 (9): 2478-83. doi:10.1110/ps.051606305 ... In Arabidopsis thaliana, there are three main families of transcription factors that contain B3 domain: ARF (Auxin Response ... Database of Arabidopsis Transcription Factors B3, RAV, and ARF family at PlantTFDB:Plant Transcription Factor Database. ... Kagaya Y, Ohmiya K, Hattori T (1999). "RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two ...
*  EFR (EF-Tu receptor)
Other proteins that are required for the proper synthesis of EFR include Arabidopsis CRT3 and UGGT, which are members of the ... One of the control mechanisms of EFR is the protein Arabidopsis stromal-derived factor-2 (SDF2). A genetic variant of the A. ... When a protein is being formed, amino acids are connected in a long sequence, known as a protein's primary structure. ... EFR, like other proteins, undergoes translation in a cell's ribosomes. After the primary structure of the protein has been ...
*  Thimet oligopeptidase
"AT5G10540 Zincin-like metalloproteases family protein [Arabidopsis thaliana (thale cress)] - Gene - NCBI". www.ncbi.nlm.nih.gov ... "AT5G65620 Zincin-like metalloproteases family protein [Arabidopsis thaliana (thale cress)] - Gene - NCBI". www.ncbi.nlm.nih.gov ... In Arabidopsis thaliana-recognized as a model plant for scientific studies-two Thimet oligopeptidases, known as TOP1 and TOP2, ... In A. thaliana, the enzyme has a role in the response to oxidative stress and degradation of oxidized proteins by breaking down ...
*  ETHE1
"Structure of an ETHE1-like protein from Arabidopsis thaliana". Acta Crystallographica Section D. 62 (Pt 9): 964-70. doi:10.1107 ... Protein ETHE1, mitochondrial, also known as "ethylmalonic encephalopathy 1 protein" and "per sulfide dioxygenase", is a protein ... Sulfur deoxygenates are proteins that function in sulfur metabolism. The ETHE1 protein is thought to catalyze the following ... This gene encodes a protein that is expressed in the thyroid. The ETHE1 protein is thought to localize primarily to the ...
*  Natasha Raikhel
Li, Ruixi; Sun, Ruobai; Hicks, Glenn R. (December 22, 2014). "Arabidopsis ribosomal proteins control vacuole trafficking and ... Smith, Harley M. S. (April 1999). "Protein Targeting to the Nuclear Pore. What Can We Learn from Plants?". Plant Physiology. ...
*  Chalcone synthase
"Expression of chalcone synthase and chalcone isomerase proteins in Arabidopsis seedlings". Plant Mol. Biol. 35 (3): 377-81. doi ... Studies have shown that these enzymes interact via protein-protein interactions. Through FLIM FRET, it was shown that CHS ... Phe215 and Phe265 are two other important amino acids that act as "gatekeepers" to block the lower protein of the opening ... CHS exists as a homodimeric protein with each monomer approximately 42-45 kDa in size. Each monomer possesses a β-keto synthase ...
*  BRI1-associated receptor kinase 1
BKI1 protein, Arabidopsis at the US National Library of Medicine Medical Subject Headings (MeSH). ... BRI1-associated receptor kinase 1 (BAK1), is a plant protein. BAK1 is a leucine-rich repeat receptor-like kinase has been ...
*  PAS domain
"ZEITLUPE Encodes a Novel Clock-Associated PAS Protein from Arabidopsis". Cell. 101: 319-329. doi:10.1016/S0092-8674(00)80841-7 ... It is typically located on the C-Terminus of the BHLH protein. PAS domains containing BHLH proteins form a BHLH-Pas protein, ... PAS A is responsible for the protein-protein interactions with other PAS domain proteins, while PAS B has a more versatile role ... period circadian protein Arnt - aryl hydrocarbon receptor nuclear translocator protein Sim - single-minded protein Since the ...
*  Bioinformatic Harvester
The collections consists of: ~72.000 human, ~57.000 mouse, ~41.000 rat, ~51.000 zebrafish, ~35.000 arabidopsis protein pages, ... "protein kinase binding" Protein: "Q9NPD3" Protein domain: "SH2 sar" Protein Localisation: "endoplasmic reticulum" Chromosome: " ... predicts protein localisation HomoloGene, compares proteins from different species gfp-cdna, protein localisation with ... information hyperlinked over proteins via gene/protein synonyms Mendelian Inheritance in Man project catalogues all the known ...
*  Jonathan Gershenzon
The Arabidopsis epithiospecifier protein promotes the hydrolysis of glucosinolates to nitriles and influences Trichoplusia ni ...
*  Phragmoplast
Pan, Ruiqin; Lee, Y.-R. Julie; Liu, Bo (2004). "Localization of two homologous Arabidopsis kinesin-related proteins in the ... "Microtubule-Associated Kinase-like Protein RUNKEL Needed for Cell Plate Expansion in Arabidopsis Cytokinesis". Current Biology ... "Somatic Cytokinesis and Pollen Maturation in Arabidopsis Depend on TPLATE, Which Has Domains Similar to Coat Proteins". The ... "Nuclear-localized subtype of end-binding 1 protein regulates spindle organization in Arabidopsis". J Cell Sci. 123 (3): 451-459 ...
*  Myrosinase
2001). "The Arabidopsis Epithiospecifier Protein Promotes the Hydrolysis of Glucosinolates to Nitriles and Influences ... demonstrated an increase in V max from 2.06 µmol/min per mg of protein to 280 µmol/min per mg of protein on the substrate, ... Under acidic conditions (pH < 3), and in the presence of ferrous ions or epithiospecifer proteins, the formation of nitriles is ... A wound- and methyl jasmonate-inducible transcript coding for a myrosinase-associated protein with similarities to an early ...
*  C9orf84
The closest plant ortholog to C9orf84 is the SHOC1 protein in Arabidopsis thaliana. C9orf84 is not very well conserved even ... Uncharacterized protein C9orf84, also known as C9orf84, is a protein that in humans is encoded by the C9orf84 gene, which ... The secondary structure of this protein is predicted to be mainly alpha-helices in roughly the first two thirds of the protein ... Ccaat/Enhancer Binding Proteins, and Lymphoid enhancer-binding factor 1. ETS1, Ccaat-enhancer-binding proteins, and Lymphoid ...
*  BURP domain
Arabidopsis RD22 drought induced protein. Maize ZRP2, a protein of unknown function in cortex parenchyma. Tomato PG1beta, the ... Soybean USP-like proteins ADR6 (or SALI5-4A), an auxin-repressible, aluminium-inducible protein and SALI3-2, a protein that is ... Some proteins known to contain a BURP domain are listed below: Brassica protein BNM2, which is expressed during the induction ... It is found in the C-terminal part of a number of plant cell wall proteins, which are defined not only by the BURP domain, but ...
*  Ottoline Leyser
Kepinski, S.; Leyser, O. (2005). "The Arabidopsis F-box protein TIR1 is an auxin receptor". Nature. 435 (7041): 446-51. doi: ... Leyser, Henrietta Miriam Ottoline (1990). An analysis of fasciated mutants of Arabidopsis thaliana and the role of cytokinin in ... the Genomic Arabidopsis Resource Network". Trends in Plant Science. 7 (4): 145-7. doi:10.1016/s1360-1385(01)02224-5. PMID ... "An auxin-dependent distal organizer of pattern and polarity in the Arabidopsis root". Cell. 99 (5): 463-72. doi:10.1016/S0092- ...
*  Auxin binding protein
"Molecular analysis of an auxin binding protein gene located on chromosome 4 of Arabidopsis". Plant Cell. 4 (2): 193-201. doi: ... In molecular biology, the auxin binding protein family is a family of proteins which bind auxin. They are located in the lumen ... which could represent a signal for translocation of the protein to the ER. The mature protein comprises around 165 residues, ... 2002). "Crystal structure of auxin-binding protein 1 in complex with auxin". EMBO J. 21 (12): 2877-85. doi:10.1093/emboj/cdf291 ...