TranscriptomeGene Expression ProfilingMolecular Sequence AnnotationSequence Analysis, RNAOligonucleotide Array Sequence AnalysisExpressed Sequence TagsHigh-Throughput Nucleotide SequencingGene Expression Regulation, PlantGene LibraryGene OntologyTranscription, GeneticCluster AnalysisSequence Analysis, DNAGenes, PlantRNA, PlantRNA, MessengerDatabases, GeneticContig MappingMicroarray AnalysisComputational BiologyGenomicsProteomeGene Regulatory NetworksReverse Transcriptase Polymerase Chain ReactionGene Expression RegulationGene Expression Regulation, BacterialGenomeGenome, PlantStress, PhysiologicalArabidopsisMetabolic Networks and PathwaysPlant RootsMolecular Sequence DataBase SequenceGene Expression Regulation, DevelopmentalReproducibility of ResultsAlternative SplicingDNA, ComplementaryPlant LeavesPhylogenyReal-Time Polymerase Chain ReactionRNA, UntranslatedRNAPlant ProteinsSignal TransductionRNA IsoformsMetabolomeMicroRNAsTranscription FactorsFlowersBiosynthetic PathwaysUntranslated RegionsGenome, HumanCicerMicrosatellite RepeatsSpecies SpecificityEvolution, MolecularMultigene FamilyOrgan SpecificityGene Expression Regulation, FungalChromosome MappingGene ExpressionSoftwareRegulonModels, GeneticHost-Pathogen InteractionsRNA, AntisensePrincipal Component AnalysisDatabases, Nucleic AcidOryza sativaOpen Reading FramesPlant DiseasesExonsPolymorphism, Single NucleotideArabidopsis ProteinsRNA, Small UntranslatedDroughtsSecondary MetabolismPhenotypeGenome, HelminthBacterial ProteinsGossypiumLaser Capture MicrodissectionProteomicsSalinityInsect ProteinsGenes, InsectGenome, BacterialGenome, FungalUp-RegulationHemipteraGene FusionSequence AlignmentRNA, BacterialMutationAdaptation, PhysiologicalFruiting Bodies, FungalTracheobiontaPlant Growth RegulatorsPopulus