Loading...
*  Transcriptome profile of the human placenta, Functional & Integrative Genomics | 10.1007/s10142-017-0555-y | DeepDyve
"Transcriptome profile of the human placenta, Functional & Integrative Genomics" on DeepDyve, the largest online rental service ... Transcriptome profile of the human placenta. Transcriptome profile of the human placenta Majewska, Marta; Lipka, Aleksandra; ... Transcriptome profile of the human placenta. Majewska, Marta; Lipka, Aleksandra; Paukszto, Lukasz; Jastrzebski, Jan; ... Characterizing placental transcriptome, which is crucial for a pregnancy's outcome, can serve as a basis for identifying the ...
https://www.deepdyve.com/lp/springer_journal/transcriptome-profile-of-the-human-placenta-TOPUTz9ghR
*  Comprehensive transcriptome analysis identifies novel molecular subtypes and subtype-specific RNAs of triple-negative breast...
Using human transcriptome microarrays, we analyzed the transcriptome profiles of 165 TNBC samples. We used k-means clustering ... Transcriptome profiling of TNBC reveals four stable molecular subtypes. According to the inclusion criteria, a total of 165 ... Comprehensive transcriptome analysis identifies novel molecular subtypes and subtype-specific RNAs of triple-negative breast ... To identify global differences in transcriptome profiles in TNBC subtypes, we performed k-means clustering on the most ...
https://breast-cancer-research.biomedcentral.com/articles/10.1186/s13058-016-0690-8
*  TransRate: reference-free quality assessment of de novo transcriptome assemblies. - Oxford Neuroscience
Using only the sequenced reads and the assembly as input, we show that multiple common artifacts of de novo transcriptome ... Applying the method to a data set of 155 published de novo transcriptome assemblies, we deconstruct the contribution that ... of the variance in the quality of published de novo transcriptome assemblies. Because TransRate is reference-free, it is ... assembly method, read length, read quantity, and read quality make to the accuracy of de novo transcriptome assemblies and ...
https://www.neuroscience.ox.ac.uk/publications/628076
*  NGS-resources: Fwd: Reference-free transcriptome assembly in non-model animals from next-generation sequencing data.
Reference-free transcriptome assembly in non-model animals from next-generation sequencing data. ... Here, the transcriptomes of five diverse non-model animal species (hare, turtle, ant, oyster and tunicate) were assembled from ... The transcriptome is a convenient and popular target for such purposes. However, designing genetic markers from NGS ... Fwd: Reference-free transcriptome assembly in non-model animals from next-generation sequencing data. ...
http://ngs-resources.blogspot.com/2012/05/fwd-reference-free-transcriptome.html
*  Evaluation of TransPlex Whole Transcriptome Amplification method for microarray gene expression profiling | Archivio...
We evaluated the new protocol Transplex™ Whole Transcriptome Amplification (WTA) produced by Rubicon Genomics. The kit was ... Evaluation of TransPlex Whole Transcriptome Amplification method for microarray gene expression profiling / C. Peano, M. ... Evaluation of TransPlex Whole Transcriptome Amplification method for microarray gene expression profiling. ... Evaluation of TransPlex Whole Transcriptome Amplification method for microarray gene expression profiling ...
https://air.unimi.it/handle/2434/62290
*  Transcriptome - Wikipedia
The transcriptome is the set of all RNA molecules in one cell or a population of cells. It is sometimes used to refer to all ... Transcriptomes may also be used to infer phylogenetic relationships among individuals. Relation to proteome[edit]. Further ... The transcriptome can be seen as a subset of the proteome, that is, the entire set of proteins expressed by a genome. ... The transcriptomes of stem cells and cancer cells are of particular interest to researchers who seek to understand the ...
https://en.wikipedia.org/wiki/Transcriptome
*  transcriptome - Wiktionary
transcriptome (plural transcriptomes). *(biochemistry, genetics) The complete set of RNA molecules (transcripts) produced in a ... Retrieved from "https://en.wiktionary.org/w/index.php?title=transcriptome&oldid=46803573" ...
https://en.wiktionary.org/wiki/transcriptome
*  VeGIN - Transcriptome
Transcriptome What is a Transcriptome Sequence? An organism's genes are expressed, that is transcribed from the genome's DNA ... Once a transcriptome has been sequenced, we can use the information to identify which parts of the genome are used to code for ... The set of genes which are transcribed in any one condition is known as the transcriptome, and the process of determining the ... If several transcriptomes have been sequenced under different growth or environmental conditions, we can start to estimate ...
https://warwick.ac.uk/fac/sci/lifesci/research/vegin/background/transcriptome/
*  transcriptome sequencing - Genetic Future
transcriptome sequencing. Genetic Future. Category archives for transcriptome sequencing. Using new sequencing technology to ...
http://scienceblogs.com/geneticfuture/category/transcriptome_sequencing/
*  Transcriptome Sequencing (RNA-Seq) | SpringerLink
Transcriptome sequencing (RNA-Seq) is a recently developed... ... The transcriptome is the entire assembly of RNA transcripts in ... Transcriptome sequencing to detect gene fusions in cancer. Nature. 2009;458(7234):97-101.PubMedPubMedCentralGoogle Scholar ... Studying bacterial transcriptomes using RNA-seq. Curr Opin Microbiol. 2010;13(5):619-24.PubMedPubMedCentralGoogle Scholar ... Chromosomal instability and transcriptome dynamics in cancer. Cancer Metastasis Rev. 2013;32(3-4):391-402.PubMedGoogle Scholar ...
https://link.springer.com/chapter/10.1007/978-1-4939-0727-4_3
*  The tammar wallaby genome and transcriptome
... The tammar wallaby (Macropus eugenii) is a kangaroo species native to islands ... international Tammar Wallaby Genome Sequencing Consortium present the tammar wallaby genome and transcriptome sequences. These ...
https://www.biomedcentral.com/collections/tammarwallaby
*  Transcriptome-wide profiling and expression ana...
Transcriptome analysis shows similarity of expression patterns for all plants exposed to nanoparticles and a low impact on gene ... De novo Transcriptome Sequencing and Development of Abscission Zone-Specific Microarray as a New Molecular Tool for Analysis of ... We performed whole transcriptome analyses of chickpea genotypes to investigate the molecular basis of drought and salinity ... In the grapevine transcriptome, during the initial stages of leaf development 1Avs2A showed single transcript was down- ...
https://www.scoop.it/t/plant-genomics/p/4013279010/2013/12/26/transcriptome-wide-profiling-and-expression-analysis-of-transcription-factor-families-in-a-liverwort-marchantia-polymorpha
*  Re: [Artemis-users] transcriptome plot with DNAPlotter
Artemis-users] transcriptome plot with DNAPlotter Lena Koenig. * *Re: [Artemis-users] transcriptome plot with DNAPlotter Tim ... Re: [Artemis-users] transcriptome plot with DNAPlotter Tim Carver Tue, 08 Nov 2011 01:11:31 -0800 ... but I cannot figure out how to create a transcriptome plot. , What type of input file is needed in addition to an annotation ...
https://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00739.html
*  Transcriptome - definition of transcriptome by The Free Dictionary
transcriptome synonyms, transcriptome pronunciation, transcriptome translation, English dictionary definition of transcriptome ... transcriptome. Also found in: Medical, Wikipedia.. Related to transcriptome: gene expression. transcriptome. (trænˈskrɪptəʊm) n ... In the present study, we re-assembled the transcriptome datasets of B.. Comparative transcriptome analysis of three Bactrocera ... Transcriptome - definition of transcriptome by The Free Dictionary https://www.thefreedictionary.com/transcriptome ...
https://www.thefreedictionary.com/Transcriptome
*  Characterizing the Transcriptome
... Jo Vandesompele at Ghent University discusses a deep dive into single-cell sequencing. ... "The transcriptome is much more complex than only polyadenylated RNA, or protein coding RNA," Vandesompele said. "There are ... Celine Everaert, another doctoral fellow in the lab, noted, "The deeper we look into the human transcriptome, the more of these ... "A lot of structural information is encoded in a transcriptome, such as alternative splicing (where different exons are fused ...
https://www.fluidigm.com/articles/characterizing-the-transcriptome
*  Microarray-Based Sketches of the HERV Transcriptome Landscape
The HERV transcriptome follows tropism rules, is sensitive to the state of differentiation and, unexpectedly, seems not to ... We obtained a first view of the HERV transcriptome by using a composite panel of 40 normal and 39 tumor samples. The experiment ... this work paves the way for further HERV transcriptome projects. ... HERV Transcriptome Views. We provided a microarray-based ... Transcriptome analysis Is the Subject Area "Transcriptome analysis" applicable to this article? Yes. No. ...
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0040194
*  Single-cell transcriptome analysis of endometrial tissue. - PubMed - NCBI
Single-cell transcriptome analysis of endometrial tissue.. Krjutškov K1, Katayama S2, Saare M3, Vera-Rodriguez M4, Lubenets D5 ... Although single-cell transcriptome analyses from various biopsied tissues have been published recently, corresponding protocols ... How can we study the full transcriptome of endometrial stromal and epithelial cells at the single-cell level? ... the amount of transcriptome data per individual epithelial cell was low, complicating further analysis. This step most likely ...
https://www.ncbi.nlm.nih.gov/pubmed/26874359
*  Transcriptome Sequencing | Thermo Fisher Scientific - CA
Whole transcriptome analysis is of growing importance in understanding how altered expression of genetic variants contributes ... Transcriptome Sequencing * Transcriptome Sequencing by Ion Torrent Next-Generation Sequencing * Whole Transcriptome Analysis ... Whole transcriptome analysis sample prep using next-generation sequencing. Whole transcriptome analysis is of growing ... Transcriptome sequencing by Ion Torrent next-generation sequencing. The Ion Proton System, combined with Ambion RNA kits, ...
https://www.thermofisher.com/ca/en/home/life-science/sequencing/rna-sequencing/transcriptome-sequencing.html
*  Mining the Mammalian Genome and Transcriptome | Science
Thank you for your interest in spreading the word about Science.. NOTE: We only request your email address so that the person you are recommending the page to knows that you wanted them to see it, and that it is not junk mail. We do not capture any email address.. ...
http://science.sciencemag.org/content/309/5740/1453.1
*  Glycome and Transcriptome Regulation of Vasculogenesis | Circulation
Glycome and Transcriptome Regulation of Vasculogenesis. Rania Harfouche, Dirk M. Hentschel, Stephanie Piecewicz, Sudipta Basu, ... Glycome and Transcriptome Regulation of Vasculogenesis. Rania Harfouche, Dirk M. Hentschel, Stephanie Piecewicz, Sudipta Basu, ... Glycome and Transcriptome Regulation of Vasculogenesis. Rania Harfouche, Dirk M. Hentschel, Stephanie Piecewicz, Sudipta Basu, ... Endothelial cells preparing to die by apoptosis initiate a program of transcriptome and glycome regulation. FASEB J. 2004; 18: ...
http://circ.ahajournals.org/content/120/19/1883
*  Brain Transcriptome | 9780128011058 | VitalSource
Buy or Rent Brain Transcriptome as an eTextbook and get instant access. With VitalSource, you can save up to 80% compared to ... Brain Transcriptome Edition by Hitzemann, Robert and Publisher Academic Press. Save up to 80% by choosing the eTextbook option ...
https://www.vitalsource.com/products/brain-transcriptome-hitzemann-robert-v9780128011058
*  EMBL Course - Whole Transcriptome Data Analysis
The course participants will use open-source software. R-coding skills and deep knowledge of statistics are not necessary for attendance because most analyses will be performed with docker4seq package, which was developed to facilitate the use of computing demanding applications in the field of NGS data analysis. Docker4seq package uses docker containers that embed demanding computing tasks (e.g. short reads mapping) into isolated containers. This approach provides multiple advantages ...
https://www.embl.de/training/events/2017/DAT17-02/introduction/index.html
*  Transcriptome Analysis Reveals Signature of Adaptation to Landscape Fragmentation
We characterize allelic and gene expression variation between populations of the Glanville fritillary butterfly (Melitaea cinxia) from two fragmented and two continuous landscapes in northern Europe. The populations exhibit significant differences in their life history traits, e.g. butterflies from fragmented landscapes have higher flight metabolic rate and dispersal rate in the field, and higher larval growth rate, than butterflies from continuous landscapes. In fragmented landscapes, local populations are small and have a high risk of local extinction, and hence the long-term persistence at the landscape level is based on frequent re-colonization of vacant habitat patches, which is predicted to select for increased dispersal rate. Using RNA-seq data and a common garden experiment, we found that a large number of genes (1,841) were differentially expressed between the landscape types. Hexamerin genes, the expression of which has previously been shown to have high heritability and which correlate
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0101467
*  Gene Expression & Transcriptome Analysis & Profiling Solutions
... solutions for high-quality gene expression and transcriptome analysis and profiling studies. ... Whole-Transcriptome Analysis with Sequencing. Capture the broad effects of gene expression changes using whole-transcriptome ... Comprehensive Transcriptome and Gene Expression Analysis. Transcriptome analysis experiments can characterize transcriptional ... AmpliSeq for Illumina Transcriptome Human Gene Expression Panel. Targeted research panel that measures expression levels of , ...
https://www.illumina.com/techniques/popular-applications/gene-expression-transcriptome-analysis.html