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*  AT1G20320 protein (Arabidopsis thaliana) - STRING network view
Transcription initiation factor IIF, beta subunit. DNA-directed RNA polymerase II subunit RPB3-A; DNA-dependent RNA polymerase ... STRING Website Improvement Campaign. deny allow Over the next 24 hours, we are collecting usage information on the web- ... Transcription initiation factor IIF, beta subunit. DNA-directed RNA polymerase II subunit RPB3-B; DNA-dependent RNA polymerase ... Transcription initiation factor IIF, beta subunit. RNA polymerase II large subunit; DNA-dependent RNA polymerase catalyzes the ...
https://string-db.org/cgi/network.pl?identifier=3702.AT1G20320.1
*  MED8 - Mediator of RNA polymerase II transcription subunit 8 - Homo sapiens (Human) - MED8 gene & protein
... as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription ... functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription ... a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator ... Integrated resource of protein families, domains and functional sites. More...InterProi. View protein in InterPro. IPR019364. ...
http://www.uniprot.org/uniprot/Q96G25
*  Phospho anti-RNA polymerase II CTD repeat YSPTSPS (S1801) antibody [EP1510Y] (ab76292) | Abcam
... phosphorylation and active transcription. It may regulate initiation or early elongation steps of transcription specially for ... We use cookies to make our site as useful as possible.. If you continue without changing your settings we'll assume you're ... The C-terminal domain (CTD) serves as a platform for assembly of factors that regulate transcription initiation, elongation, ... Methylated at Arg-1810 prior to transcription initiation when the CTD is hypophosphorylated, phosphorylation at Ser-1805 and ...
http://www.abcam.com/rna-polymerase-ii-ctd-repeat-ysptsps-phospho-s1801-antibody-ep1510y-ab76292.html
*  Med14 - Mediator of RNA polymerase II transcription subunit 14 - Mus musculus (Mouse) - Med14 gene & protein
... as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription ... functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription ... a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator ... Integrated resource of protein families, domains and functional sites. More...InterProi. View protein in InterPro. IPR013947. ...
http://www.uniprot.org/uniprot/A2ABV5
*  In vivo live imaging of RNA polymerase II transcription factories in primary cells. - Radcliffe Department of Medicine
In conclusion, transcription factories exist in living cells, and initiation and elongation of transcripts takes place in ... Chromatin immunoprecipitation (ChIP) coupled with deep sequencing (ChIP-seq) data show that the genome-wide binding sites of ... These processes are thought to take place in localized transcription foci in the nucleus, known as 'transcription factories,' ... We show that transcription factories exist in living cells as distinct foci by live-imaging fluorescently labeled CDK9, a ...
https://www.rdm.ox.ac.uk/publications/701855
*  DNA-directed RNA polymerase I subunit RPA12
transcription elongation from RNA polyme... 30 transcription initiation from RNA polyme... 33 ... Since this is your first visit to the site, you are seeing this message. It will not be displayed on subsequent visits. ... DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as ... functional analysis showed that ZNRD1 down-regulation by siRNA or shRNA impaired HIV-1 replication at the transcription level ...
https://pharos.nih.gov/idg/targets/Q9P1U0
*  AT1G31300 protein (Arabidopsis thaliana) - STRING network view
STRING Website Improvement Campaign. deny allow Over the next 24 hours, we are collecting usage information on the web- ... Binding of TFIID to the TATA box is the initial transcriptional step of the pre- initiation complex (PIC), playing a role in ... Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that ... Binding of TFIID to the TATA box is the initial transcriptional step of the pre- initiation complex (PIC), playing a role in ...
https://string-db.org/cgi/network.pl?identifier=3702.AT1G31300.1
*  Cloning of a subunit of yeast RNA polymerase II transcription factor b and CTD kinase | Science
Your Name) thought you would like to see this page from the Science web site. ... Yeast RNA polymerase II initiation factor b copurifies with three polypeptides of 85, 73, and 50 kilodaltons and with a protein ... However, the sequence is similar to that of the 62-kilodalton subunit of the HeLa transcription factor BFT2, suggesting that ... Photoaffinity labeling with 3'-O-(4-benzoyl)benzoyl-ATP (adenosine triphosphate) identified an ATP-binding site in the 85- ...
http://science.sciencemag.org/content/257/5075/1389
*  FKH1 - Fork head protein homolog 1 - Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) - FKH1 gene & protein
negative regulation of transcription involved in G1/S transition of mitotic cell cycle Source: SGD ,p>Inferred from Genetic ... positive regulation of DNA-dependent DNA replication initiation Source: SGD ,p>Inferred from Mutant Phenotype,/p> ,p>Describes ... Integrated resource of protein families, domains and functional sites. More...InterProi. View protein in InterPro. IPR000253. ... negative regulation of transcription involved in G2/M transition of mitotic cell cycle Source: SGD ,p>Inferred from Mutant ...
http://www.uniprot.org/uniprot/P40466
*  POLR2H - DNA-directed RNA polymerases I, II, and III subunit RPABC3 - Homo sapiens (Human) - POLR2H gene & protein
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as ... transcription initiation from RNA polymerase II promoter Source: Reactome. *transcription initiation from RNA polymerase I ... Integrated resource of protein families, domains and functional sites. More...InterProi. View protein in InterPro. IPR012340. ... RNA Polymerase III Transcription Initiation From Type 1 Promoter. R-HSA-76066. RNA Polymerase III Transcription Initiation From ...
http://www.uniprot.org/uniprot/P52434
*  TATA-binding protein - Wikipedia
... and modulation of DNA-binding affects the rate of transcription complex formation and initiation of transcription. Mutations ... This DNA sequence is found about 30 base pairs upstream of the transcription start site in some eukaryotic gene promoters. TBP ... TFIID is the first protein to bind to DNA during the formation of the pre-initiation transcription complex of RNA polymerase II ... TBP is also a component of RNA polymerase I and RNA polymerase III and is therefore involved in transcription initiation by all ...
https://en.wikipedia.org/wiki/TATA-binding_protein
*  WikiGenes - Transcription Initiation Site
Gene context of Transcription Initiation Site. *Analytical, diagnostic and therapeutic context of Transcription Initiation Site ... High impact information on Transcription Initiation Site. *Chemical compound and disease context of Transcription Initiation ... Anatomical context of Transcription Initiation Site. *The PIE motif contains a consensus site for the macrophage and B cell ... High impact information on Transcription Initiation Site. *ER binds selectively to a limited number of sites, the majority of ...
https://www.wikigenes.org/e/mesh/e/20212.html
*  The evolution of transcription-initiation sites
... we present a simple null model in which the evolution of transcription-initiation sites is entirely driven by the stochastic ... Inr, genome evolution, TATA, transcription initiation, UTR, eukaryotes National Category Genetics Identifiers. URN: urn:nbn:se: ... subject to the constraint imposed by the upstream accumulation of premature translation-initiation codons. If this hypothesis ... impose a burden on eukaryotic genes by providing substrate for the mutational origin of premature translation-initiation codons ...
http://uu.diva-portal.org/smash/record.jsf?pid=diva2%3A776848
*  Primary structure of guinea pig preprodynorphin and preproenkephalin mRNAs : multiple transcription initiation sites for...
Multiple transcription initiation sites for each of these prepropeptide genes were also identified. Studies were conducted in ... Primary structure of guinea pig preprodynorphin and preproenkephalin mRNAs: multiple transcription initiation sites for ... and RNase protection assays demonstrated that in addition to a primary initiation site, transcription of this mRNA is initiated ... These studies confirmed that the primary transcription start site is 28 nucleotides downstream from the TATAA site, and that ...
http://uu.diva-portal.org/smash/record.jsf?pid=diva2:164133
*  CTCF binding sites promote transcription initiation and prevent DNA methylation on the maternal allele at the imprinted H19...
CTCF binding sites promote transcription initiation and prevent DNA methylation on the maternal allele at the imprinted H19/ ... CTCF binding sites promote transcription initiation and prevent DNA methylation on the maternal allele at the imprinted H19/ ... eagle-i Home. Institution Home. View only Core Laboratories View only Laboratories. View All Resource Providers. SWEET ...
http://eagle-i.itmat.upenn.edu/i/0000013d-f9cc-c783-2ed7-105480000000
*  Positioning of the Start Site in the Initiation of Transcription by Bacteriophage T7 RNA Polymerase - PDF
1997) 272, 21±30 Positioning of the Start Site in the Initiation of Transcription by Bacteriophage T7 RNA Polymerase Benjamin F ... 2 22 Start Site Selection in Transcription Initiation at the adjoining transcription start site (Breslauer et al., 1986; Jia et ... Transcription. 1 J. Mol. Biol. (1997) 272, 21±30 Positioning of the Start Site in the Initiation of Transcription by ... 5 Start Site Selection in Transcription Initiation 25 Table 2. Assignment of transcription products RNA seq a- 32 PŠGTP g- 32 ...
http://docplayer.net/376702-Positioning-of-the-start-site-in-the-initiation-of-transcription-by-bacteriophage-t7-rna-polymerase.html
*  Characterization of the chicken inward rectifier K+ channel IRK1/Kir2.1 gene | BMC Genomics | Full Text
... cells using in vitro transcription assays. While multiple transcription initiation sites and the combinatorial function of ... cIRK1 has multiple transcription initiation sites, a feature also seen in mouse. However, while the chicken and mouse promoter ... cIRK1 contains two exons with splice sites in the 5'-untranslated region, a structure similar to mouse and human orthologs. ... transcription initiation of cIRK1. Just upstream of the transcription initiation site lie several binding sites for ...
https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-5-90
*  Transcription of the extended hyp-operon in Nostoc sp. strain PCC 7120.
... a correctly assembled active site requires the involvement of at least seven proteins, encoded by hypABCDEF and a hydrogenase ... Transcription Initiation Site. Transcription, Genetic*. Chemical. Reg. No./Substance: 0/Bacterial Proteins; 0/DNA, Bacterial; ... HupL harbours the active site and HupS harboururs iron-sulphur (FeS) slusters which transfer electrons from the active site [12 ... Transcription analysis Reverse transcription (RT) reactions were performed with the RevertAid? H Minus First Strand cDNA ...
http://www.biomedsearch.com/nih/Transcription-extended-hyp-operon-in/18442387.html
*  Temporally controlled ablation of PTEN in adult mouse prostate epithelium generates a model of invasive prostatic...
The transcription initiation site is marked by an arrow. (B) Schematic representation of wild-type (+), floxed (L2), and ... thought you would like to see the PNAS web site. ... was cloned into the SalI site of pGS-Cre-ERT2 (29), yielding ... 2006) Pten deletion leads to the expansion of a prostatic stem/progenitor cell subpopulation and tumor initiation. Proc Natl ... 1996) Ligand-activated site-specific recombination in mice. Proc Natl Acad Sci USA 93:10887-10890.. ...
https://www.pnas.org/content/105/7/2521
*  KAKEN - Research Projects | Functional analysis of domain structures of human hepatocyte growth factor (KAKENHI-PROJECT...
Publications] K. Miyazawa et al.: 'Structural organization and the transcription initiation site of the human hepatocyte growth ... Publications] K.Miyazawa: 'Structural organization and the transcription initiation site of the human hepatocyte growth factor ... Publications] K.Miyazawa: 'Structural organization and the transcription initiation site of the human hepatocyte growth factor ...
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-02454540/
*  Transcriptional Regulation in Eukaryotes: Concepts, Strategies, and Techniques, Second Edition
3. Transcription Initiation Site Mapping. 4. Functional Assays for Promoter Analysis. 5. Identification and Analysis of Distant ... Other CSHL Web Sites. Cold Spring Harbor Laboratory Meetings and Courses DNA Learning Center. Watson School of Biological ... 11. DNA Binding by Regulatory Transcription Factors. 12. Transcription and Preinitiation Complex Assembly In Vitro. 13. ... In addition to a new chapter on the in vitro analysis of chromatin templates for DNA-binding studies and transcription, this ...
https://www.cshlpress.com/default.tpl?cart=154734829423949060&action=full&--eqskudatarq=686
*  Absolute number of identified transcription start sites | Open-i
Absolute number of identified transcription start sites in correlation to the length of their 5′-untranslated regions (5′-UTRs ... Fig2: Absolute number of identified transcription start sites in correlation to the length of their 5′-untranslated regions (5 ... Fig2: Absolute number of identified transcription start sites in correlation to the length of their 5′-untranslated regions (5 ... Results: Analysis of the primary transcriptome data enabled the detection of 2,167 putative transcription start sites (TSSs) ...
https://openi.nlm.nih.gov/detailedresult.php?img=PMC4342826_12864_2015_1239_Fig2_HTML&req=4
*  Catalytic and binding properties (A) βW183 mutants are | Open-i
The formation of the open promoter complex (RPo) in which the melted DNA containing the transcription start site is located at ... suggesting its involvement in a general mechanism driving the RPi to RPo transition for transcription initiation. ... The formation of the open promoter complex (RPo) in which the melted DNA containing the transcription start site is located at ... suggesting its involvement in a general mechanism driving the RPi to RPo transition for transcription initiation. ...
https://openi.nlm.nih.gov/detailedresult.php?img=PMC3675486_gkt271f2p&req=4
*  Model equations: protein-protein interactions.The mod | Open-i
Rearrangements of about 2.5 kilobases of regulatory DNA located 5' of the transcription start site of the Drosophila even- ... Rearrangements of about 2.5 kilobases of regulatory DNA located 5' of the transcription start site of the Drosophila even- ... We placed these fusion constructs in a targeted transformation site and obtained quantitative expression data for these ... We placed these fusion constructs in a targeted transformation site and obtained quantitative expression data for these ...
https://openi.nlm.nih.gov/detailedresult.php?img=PMC3585115_pgen.1003243.g003&req=4
*  The effects of sex, age, Alzheimer's disease, and 24-ho | Open-i
Regions near transcription start sites were enriched for high-amplitude rhythmic DNA methylation sites, which were in turn time ... Regions near transcription start sites were enriched for high-amplitude rhythmic DNA methylation sites, which were in turn time ... These findings support the hypothesis that 24-hour rhythms of DNA methylation, particularly near transcription start sites, may ... These findings support the hypothesis that 24-hour rhythms of DNA methylation, particularly near transcription start sites, may ...
https://openi.nlm.nih.gov/detailedresult.php?img=PMC4222754_pgen.1004792.g006&req=4