repeat_instability_region (SO:0002202). In the image below graph nodes link to the appropriate terms. Clicking the image ... INSDC_qualifier:tandem, tandem repeat, INSDC_feature:repeat_region. DB Xrefs: SO: ke ...

Short tandem repeats (STRs) are widely present in the human genome. Studies have confirmed that STRs are associated with more ... Noise-cancelling repeat finder: uncovering tandem repeats in error-prone long-read sequencing data. Bioinformatics 2019, 35: ... accurate characterization of expanded tandem repeat length and sequence through whole genome long-read sequencing on PromethION ... Short tandem repeats (STRs), also known as microsatellites, are repetitive DNA sequences consisting of 1-6-bp motifs present in ...

Tandem repeat sequence. MLST allelic profile. ST. t899. 07-16-23-----------------02-34. 3-3-1-1-1-1-10. 9. ... Tandem repeat successions in spa types previously associated with Staphylococcus aureus ST9 and ST398* ...

However, previous investigations focused on repeated element sequences from LINE-1 and Alu families. Tandem repeats, which ... However, previous investigations focused on repeated element sequences from LINE-1 and Alu families. Tandem repeats, which ... Our result suggests that PM exposure is associated with hypomethylation of selected tandem repeats. Measuring tandem-repeat ... Effects of short-term exposure to inhalable particulate matter on DNA methylation of tandem repeats Environ Mol Mutagen. 2014 ...

Protein tandem repeats can be either detected from sequence or annotated from structure. Specialized methods were built for the ... a database of annotated tandem repeat protein structures (CS1 maint: multiple names: authors list, Protein tandem repeats, ... An array of protein tandem repeats is defined as several (at least two) adjacent copies having the same or similar sequence ... In proteins, a "repeat" is any sequence block that returns more than one time in the sequence, either in an identical or a ...

Tandem Repeat Sequences / genetics * Transfection * fms-Like Tyrosine Kinase 3 / genetics* Substances * Oxidants ... This study addressed the role of DEP-1 for regulation of the acute myeloid leukemia (AML)-related mutant FLT3 internal tandem ...

... and re-sequence 737 accessions of barnyard grasses and millets from 16 rice-producing countries. Phylogenomic and comparative ... Benson, G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27, 573-580 (1999). ... Tandem repeat finder (v4.09)74 was used to identify tandem repeats along the chromosomes. To identify the centromeric regions, ... 3). Centromeric regions could be found in all chromosomes containing a 155-bp tandem repeat, similar to other grass species23, ...

Accurate characterization of expanded tandem repeat length and sequence through whole genome long-read sequencing on PromethION ...

RepeatMasker output file tabulating the masking results for vertebrate repeat sequences (A)* and for Asian seabass-specific ... These sequencing methodologies provide an opportunity for in-depth analyses of host and pathogen genomes as they are able to ... Tandem repeats with highest coverage of 23-mer HiSeq reads. (XLSX). View ... Whole Genome Sequencing (WGS) is a powerful method for detecting drug resistance, genetic diversity and transmission dynamics ...

Numbers below each feature refer to amino acid positions [11, 12, 21]. b Consensus sequence of the tandem repeat. The repeats ... including a large tandem repeat domain (TRD), three short predicted coiled-coil domains and a stretch of ~ 130 residues at the ... a large gene with a tandem repeat encoding 47 amino acids, causes Alström syndrome. Nat Genet 31:79-83 ... Sequence features of ALMS1. a Representation of the primary structure showing recognised features in relation to exon ...

... simple sequence repeats) or STRs (short tandem repeats) consist of a few nucleotides-2-6 base pair DNA sequence-epeated several ... VNTRs and STRs are repetitive polymorphisms composed of sequences that are repeated in tandem. These repeat sequences measure ... Among these markers are minisatellites (or variable number of tandem repeats) and microsatellites (or STR, short tandem repeats ... It is therefore necessary to isolate and purify the sequence or sequences that are of interest, whether it is the sequence of a ...

Typing Clostridium difficile strains based on tandem repeat sequences. BMC Microbiology, 9, 6. DOI link. ... Schouls, LM, van der Heide, HGJ, Vauterin, L, Vauterin, P, & Mooi, FR (2004). Multiple-locus variable-number tandem repeat ... Multilaboratory Validation Study of Standardized Multiple-Locus Variable-Number Tandem Repeat Analysis Protocol for Shiga Toxin ... producing Klebsiella pneumoniae Sequence Type 716: A Study Using Whole-genome Sequencing. Clinical infectious diseases, 68, 993 ...

KEYWORDS: bears, conservation genetics, microsatellite, population genetics, SHORT TANDEM REPEAT, simple sequence repeat, ...

Extensive allelic variation among Francisella tularensis strains in a short-sequence tandem repeat region. J Clin Microbiol. ...

Analysis of short tandem repeat expansions and their methylation state with nanopore sequencing. bioRxiv (Preprint Server), ... Fast and simplified extraction of Read-Level Methylation metrics from bisulfite sequencing data. Bioinformatics 37 (21), S. ... a raw data simulator for Nanopore Sequencing. In: 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), ...

BES analyses identified 6,848 simple sequence repeats (SSRs), of which 3,854 had high quality flanking sequences for PCR ... The discovery of specific repeat elements will facilitate analyses of sequence content (e.g. for SNPs discovery and for ... The first rainbow trout repeat elements database (INRA RT rep1.0) containing 735 putative repeat elements was developed, and ... we sequenced a large number of rainbow trout BAC-end sequences (BES) and characterized their contents. A total of 176,485 high ...

Multilocus Variable Number of tandem repeat assay and multilocus sequence typing (MLST) analysis was used for molecular ... The Multilocus Variable Number of tandem repeat assays and clustering was performed as previously described. Reference isolates ... Complete nucleotide sequence of KPC-3-encoding plasmid pKpQIL in the epidemic Klebsiella pneumoniae sequence type 258. Leavitt ... We reported the draft genome sequence of the K. pneumoniae ST258 XDR clinical strain from Israel.. Draft Genome Sequence of an ...

A typical sequence of VDRE is a tandem repeating oligonucleotide of 6 base pairs including a 3-nucleotide spacer. This ...

Discovery by metagenomics of a functional tandem repeat sequence that controls gene expression in bacteria.. FEMS MICROBIOL ... Draft Genome Sequence of Bryobacteraceae Strain F-183.. MICROBIOL RESOUR ANNOUNC. 2022 Jan 13:e0045321. doi: 10.1128/mra.00453- ... Complete genome sequence and expression profile of the commercial lytic enzyme producer Lysobacter enzymogenes M497-1. DNA Res ... Complete Genome Sequence of Thiohalobacter sp. Strain COW1, Isolated from Activated Sludge Treating Coke Oven Wastewater.. ...

The analyzed STR markers are 90-350 bp long non-transcriptional variable number of tandem repeat sequences at certain points of ... The chromosome localization, repeat structure and PCR primer sequences of the analyzed markers are summarized in Supplementary ... International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature. (2001) 409:860- ... The test is repeated once more with the same setup.. Threatening Approach. O stands motionless next to the dog and holds the ...

Sequences repeated in tandems (microsatellites) are used for parentage testing. These microsatellites contain sequences ... repeated in tandems from two to seven base pairs. Microsatellites are inherited in Mendelian manner. Each offspring has to ...

Microsatellites, which are short tandem repeat DNA sequences, are abundantly and evenly distributed throughout the genome. ... The minisatellite repeat sequences examined were as follows: (a) tracts of(A)10 sequence at TGF-βRII; (b)(G)8 at IGFIIR; (c)(G) ... Shibata D., Peinado M. A., Ionov Y., Malkhosyan S., Perucho M. Genomic instability in repeated sequences is an early somatic ... Whereas lengthy microsatellite sequences are uncommon in coding regions, smaller repeats (minisatellites) are occasionally ...

Comparison of Next-Generation Sequencing and Short-Tandem Repeats to Monitor Chimerism Analysis. ... Detection of HLA-A and HLA-J haplotype diversity from next-generation sequencing data in commercially available samples. ... and clinicians with its best-in-class product portfolio of next-generation sequencing (NGS) based AlloSeq* products, which ...

Microsatellites are tandem repeats of short DNA sequences, abundant throughout the human genome. MSI is a hypermutator ...

Complete rRNA sequence, arrangement of tandem repeated units and phylogeny of Nosema fumiferanae from spruce budworm, ...

2018) using expressed sequence tag-short tandem repeats (EST-STRs) markers. Samples (N = 291) were analysed from six sample ... The enzyme shows low sequence identity (,30%) to the members of the type-A family of DNA polymerases, except for two yet ... Using 16S ribosomal RNA gene amplicon sequencing and metagenomics, we resolved the microbial community composition on the North ... then assigned to a species by sequencing 450bp of the Mitochondrial Control Region. Comparing the results with visual ...

All colonies, regardless of the nucleotide sequence of rpsA, were found to be sensitive to all of the drugs tested except for ... All colonies, regardless of the nucleotide sequence of rpsA, were found to be sensitive to all of the drugs tested except for ... MIRU-VNTR analysis, on the other hand, uses mini-satellite sequences (tandem repeats of 10-100 nucleotides) dispersed at ... tandem repeat sequences dispersed at eight loci in the genome as source of genetic variability-in order to find additional ...

Microsatellites (Short sequence repeats, SSRs, Short tandem repeats): are short (1-6bp) repeating sequences in genetic code. ... L1 line sequence transpositions. The idea is that unequal transfer occurs and then a chromosome has two copies of the same gene ... This is an mRNA sequence that codes for more than one protein. ...

ATRX can bind the variable number of tandem repeats (VNTR) sequence in the promoter region of the α-globin gene cluster. The ... Effect of ATRX and G-Quadruplex Formation by the VNTR Sequence on α-Globin Gene Expression. By Yue Li, Junetha Syed, Yuki ... Home / KnowledgeBase Articles / Effect of ATRX and G-Quadruplex Formation by the VNTR Sequence on α-Globin Gene Expression ... Our results demonstrate that stable G-quadruplex formation by the VNTR sequence downregulates the expression of α-globin genes ...