Tandem repeats have been shown to cause human disease, may play a variety of regulatory and evolutionary roles and are ... A tandem repeat in DNA is two or more contiguous, approximate copies of a pattern of nucleotides. ... A tandem repeat in DNA is two or more contiguous, approximate copies of a pattern of nucleotides. Tandem repeats have been ... Tandem Repeats Finder: A Program to Analyze DNA Sequences Nucleic Acids Res. 1999 Jan 15;27(2):573-80. doi: 10.1093/nar/27.2. ...
tandem repeat sequences multiple copies of the same dNA base sequence on a chromosome; used as a marker in physical mapping of ... Retrieved from "https://www.biology-online.org/dictionary/index.php?title=Tandem_repeat_sequences&oldid=56355" ...
... and Ser7 within the Carboxyl-terminal Domain Repeat. ... Crystal structure of the TCERG1 FF4-6 tandem repeat domain. ... View Sequence & DSSP Image. Download Sequence Chain Image. Chain Info. Polymer: 1. Length: 190 residues. Chain Type: ... Sequence Display for the Entities in PDB 4FQG The graphical representation below shows this entrys sequences as reported in ... Sequence & Structure Relationships. Enable Jmol to view annotations in 3D.. Display Jmol. Redundancy Reduction and Sequence ...
... namely changes in tandem repeat number. Historically, tandem repeats have been designated as non functional ... Beyond Junk-Variable Tandem Repeats as Facilitators of Rapid Evolution of Regulatory and Coding Sequences. Rita Gemayel 1,2. ... "Beyond Junk-Variable Tandem Repeats as Facilitators of Rapid Evolution of Regulatory and Coding Sequences." Genes 3, no. 3: 461 ... Beyond Junk-Variable Tandem Repeats as Facilitators of Rapid Evolution of Regulatory and Coding Sequences. Genes. 2012; 3(3): ...
... and suggests that tandem repeat mutations may be a hidden cause of X-linked intellectual disability. ... This study demonstrates the power of single molecule sequencing to measure tandem repeat lengths and detect expansions, ... full tandem repeat length sequences were obtained for 88-93% of the targets and up to 99.6% of the repeats with a moderate ... Mapping the landscape of tandem repeat variability by targeted long read single molecule sequencing in familial X-linked ...
... the number of repeats but contained many identical repeats in common or showed a single deletion of the internal spa sequence ... Multiple-locus variable-number tandem-repeat analysis (MLVA), a new PCR-based method of typing Staphylococcus aureus, was ... Comparison of Multiple-Locus Variable-Number Tandem-Repeat Analysis with Pulsed-Field Gel Electrophoresis, spa Typing, and ... New method for typing Staphylococcus aureus strains: multiple-locus variable-number tandem repeat analysis of polymorphism and ...
Isoallelic frequency estimation for short tandem repeat markers from massive parallel sequencing data. / Andersen, Mikkel Meyer ... Isoallelic frequency estimation for short tandem repeat markers from massive parallel sequencing data. I: Forensic Science ... Isoallelic frequency estimation for short tandem repeat markers from massive parallel sequencing data. Forensic Science ... title = "Isoallelic frequency estimation for short tandem repeat markers from massive parallel sequencing data", ...
... sequence motif interruptions, and nucleotide modifications. For many TRs, however, these features are very difficult to assess ... PromethION from Oxford Nanopore Technologies was used to assess the potential of long-read whole genome sequencing to surmount ... Tandem repeats (TRs) can cause disease through their length, ... characterization of expanded tandem repeat length and sequence ... Nanopore sequencing of the fungal intergenic spacer sequence as a potential... * Complete genome sequence of ovine ...
The analysis of Short Tandem Repeat polymorphisms is widely used as a method for human identification. There is a demand to ... Berschick P., Reinhold J. (1996) Analysis of the Short Tandem Repeat Polymorphism D18S51: Allele Frequencies and Sequence ... Analysis of the Short Tandem Repeat Polymorphism D18S51: Allele Frequencies and Sequence Studies. ... The analysis of Short Tandem Repeat polymorphisms is widely used as a method for human identification. There is a demand to ...
mtDNA tandem repeats in domestic dogs and wolves: Mutation mechanism studied by analysis of the sequence of imperfect repeats. ... Three repeat types were found among these individuals, distributed so that different sequences of the repeat types were formed ... tandem repeats, D-loop, homoplasmy, hair, forensic, microsatellites, evolution, DNA sequencing, PCR, domestic dog, wolf ... mitochondrial DNA, tandem repeats, mutation, Canis, DNA CONTROL REGION, MAMMALIAN MITOCHONDRIAL-DNA, D-LOOP REGION, EVOLUTION, ...
The Tandem Repeats Database enables the identification of tandem repeats across entire genomes. The Strain Comparison Page ... identifies tandem repeats differing between different genome sequences from the same species. The Blast in the Tandem Repeats ... The previously developed tandem repeats database takes advantage of the release of genome sequence data for a growing number of ... In the case of major human pathogens, such as S. aureus, more than one strain is being sequenced, so that tandem repeats most ...
The DNA fragments containing the repeated sequences in Nipponbare were then cloned into lambda EMBL3, and sequences of nine ... Gene conversion within the repeated sequences might have further diversified their sequences. ... demonstrating that this sequence occurs in tandem in the genome. The copy number of the sequence estimated by dot blot ... Each repeating unit showed sequence divergency mostly by substitution of bases in a range from 3% to 7%, when compared with a ...
Tandem repeat sequences. Multiple copies of the same base sequence on a chromosome; used as markers in physical mapping. ... Sequencing. Determination of the order of nucleotides (base sequences) in a DNA or RNA molecule or the order of amino acids in ... DNA sequence variations that occur when a single nucleotide (A, T, C, or G) in the genome sequence is variable in a population. ... Draft sequence. The sequence generated by the HGP as of June 2000 that, while incomplete, offers a virtual road map to an ...
... tandem-repeat analysis assay and its complementarity with pulsed-field gel electrophoresis and multilocus sequence typing for ... The goal of this study was to develop and evaluate an optimized multilocus variable number of tandem repeat (VNTR) analysis ( ... We use cookies on our website to give you the most relevant experience by remembering your preferences and repeat visits. By ... multilocus sequence typing (MLST), and pulsed-field gel electrophoresis (PFGE). MLVA-11 had less discriminatory power than PFGE ...
Fundamental features that were emphasized in training ClanTox include cysteines and their spacing along the sequences. Among ... False Detection of TOLIPs Is Associated with Tandem Repeats Sequences. It has been noted that the Nematosella proteome is ... Discovery of Tandem Repeats (TRs). The presence of tandem repeats (TRs) in proteins and transcripts was determined using the ... Table 2. Tandem Repeats (TR) proteins among the top predictions from Nematostella. Each repeat was identified in two proteins ( ...
Detecting TYMS Tandem Repeat Polymorphism by the PSSD Method Based on Next-Generation Sequencing. (E-pub Ahead of Print). ... Title:Detecting TYMS Tandem Repeat Polymorphism by the PSSD Method Based on Next-Generation Sequencing ... "Detecting TYMS Tandem Repeat Polymorphism by the PSSD Method Based on Next-Generation Sequencing", Current Bioinformatics (2020 ... paired seed sequence distance, the variable number of tandem repeat (VNTR), similar polymorphism analyses ...
Conserved sequences flank variable tandem repeats in two α-antigen genes of Plasmodium falciparum. / Cowman, Alan F.; Saint, ... Conserved sequences flank variable tandem repeats in two α-antigen genes of Plasmodium falciparum. Cell. 1985;40(4):775-783. ... Cowman, AF, Saint, RB, Coppel, RL, Brown, GV, Andere, RR & Kemp, DJ 1985, Conserved sequences flank variable tandem repeats in ... title = "Conserved sequences flank variable tandem repeats in two {\^I}±-antigen genes of Plasmodium falciparum", ...
Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999;27(2):573-80.PubMedPubMedCentral ... Tandem repeat sequences (, 10 bp in length) were identified with TRF v4.09 [59], with parameters of 2, 7, and 7 for matches, ... Repeat sequence analyses. Repeat regions play an important role in recombination and genomic rearrangements [24, 25]. Eleven ... Over 40 large repeats and approximately 130 simple sequence repeats as well as a group of genomic hotspots were detected. ...
Centromeric Sequences Are Composed of High-Order Tyba Tandem Repeats Interspersing the Gene-Containing Chromatin.. The higher- ... 2005) Sobo, a recently amplified satellite repeat of potato, and its implications for the origin of tandemly repeated sequences ... However, the origin of novel satellite repeats remains elusive. Tandem repeats with homology to parts of retrotransposons have ... Original ChIP-sequencing sample data, original Illumina sequencing data for the genomic DNA and BACs, and RNA-sequencing data ...
Detecting expansions of tandem repeats in cohorts sequenced with short-read sequencing data ... 2018) Detecting expansions of tandem repeats in cohorts sequenced with short-read sequencing data. The American Journal of ... We developed exSTRa (expanded short tandem repeat algorithm), a method that uses either WES or WGS to identify repeat ... We demonstrate that exSTRa can be effectively utilized as a screening tool for detecting repeat expansions in WES and WGS data ...
... genotyping and investigation of the genomic underpinnings of adaptive variation afforded by high-throughput sequencing ... Microsatellite: Tandem repeats of short DNA sequences, usually in pairs, triplets, or quadruplets that are used as neutral ... Mitogenomic Sequencing and Mitochondrial Short Tandem Repeats. In green turtle rookeries of the western Atlantic, extensive ... High-throughput sequencing. High-throughput sequencing (HTS; also referred to as next generation sequencing, massively parallel ...
... This study aimed to compare 16S ribosomal ribonucleic acid (rRNA) sequencing and variable-number tandem repeat (VNTR) ... One M. intracellulare strain was isolated from each patient and genotyped using 16S rRNA and eight loci VNTR sequencing. ...
Definition of MHC-restricted CTL epitopes from non-variable number of tandem repeat sequence of MUC1. Vaccine. 2000;18(19):2059 ... Definition of MHC-restricted CTL epitopes from non-variable number of tandem repeat sequence of MUC1. / Pietersz, Geoffrey A A ... title = "Definition of MHC-restricted CTL epitopes from non-variable number of tandem repeat sequence of MUC1", ... T1 - Definition of MHC-restricted CTL epitopes from non-variable number of tandem repeat sequence of MUC1 ...
... ... Characterization of Erwinia amylovora strains from Middle Atlas Mountains in Morocco by PCR based on tandem repeat sequences. ... strains isolated from the Middle Atlas Mountains in Morocco have been characterized using sequences from tandem repeat of ... Three VNTR sequences were identified and used for studying the genetic diversity of the strains using a PCR fingerprinting ...
To determine whether spa type of methicillin-resistant Staphylococcus aureus in pigs belonged to sequence type (ST) 398, we ... Tandem repeat sequence. MLST allelic profile. ST. t899. 07-16-23-----------------02-34. 3-3-1-1-1-1-10. 9. ... Tandem repeat successions in spa types previously associated with Staphylococcus aureus ST9 and ST398* ...
The STRsearch can not only determine the allele by counting repeat patterns and INDELs that are actually in the STR region, but ... Existing STR genotyping tools, mostly developed for whole-genome sequencing data, are not effective for MPS data. More ... Additionally, we trained a base classifier using sequence properties and used it to predict the probability of correct ... With the continuous development of massively parallel sequencing (MPS), more laboratories have utilized this technology for ...
Noise-cancelling repeat finder: uncovering tandem repeats in error-prone long-read sequencing data. Bioinform. 35(22): 4809- ... GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing. BMC ... Greedily assemble tandem repeats for next generation sequences. Int. J. High Perform. Comput. Netw. 15(1/2): 1-11 (2019). ... Tandem repeats detection in DNA sequences using Kaiser window based adaptive S-transform. Bio Algorithms Med Syst. 13(3): 167- ...
Variable number tandem repeat (VNTR) sequencing:. To test meiotic recombination frequencies flanking the IgH locus in ... For the SNP pairs in chromosomes 17 and 19 (as for the other repeated SNP genotyping), results show that increasing the sample ... 2011 Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells. Cell 147: 107- ... 2011 Translocation-capture sequencing reveals the extent and nature of chromosomal rearrangements in B lymphocytes. Cell 147: ...
Centromere sequences usually have long tandem repeats (satellites). In holocentric nematodes it is not clear how kinetochores ... We also present a new program, SATFIND, which is suited to find satellite sequences. ... Centromere sequences in the genome are associated with the formation of kinetochores, where spindle microtubules grow in ... Tandem repeat sequence analysis Is the Subject Area "Tandem repeat sequence analysis" applicable to this article? Yes. No. ...
Variable number of tandem repeat (VNTR) typing is based on analysis of DNA segments containing "tandem repeated" sequences in ... MIRUs are a class of tandem repeated sequences. There are a total of 41 MIRU loci, of which 12 have been selected for ... 10 repeats = "a"; 11 repeats = "b"; 12 repeats = "c"; etc. Occasionally, the repeat number is 0. If the region is deleted and ... The DR region consists of multiple copies of a conserved 36-base-pair sequence (the direct repeats) separated by multiple ...