CombAlign: a code for generating a one-to-many sequence alignment from a set of pairwise structure-based sequence alignments |...
... to reflect amino-acid deletions or structural divergence in the reference relative to one or more compared structures. ... 3, box). This region is perfectly aligned at the sequence level, yet displays poor structural homology when examined using ... or sequence-based sequence alignment (MSSA) given a set of pairwise sequence alignments (which may be structure based). ... The following sequences were downloaded from Genbank and used in this work: 1) Matrix protein (VP40) sequences for Ebolavirus ...https://scfbm.biomedcentral.com/articles/10.1186/s13029-015-0039-1
The American Journal of Tropical Medicine and Hygiene | Repeated Immunogenic Amino Acid Sequences of Plasmodium Species Share...
By reducing homologies of such peptide vaccines to host proteins, the possibility of autoimmune complications may be reduced, ... amino acid sequences between tandemly repeated Plasmodium amino acid sequences and the human and human viral sequences compiled ... Matches of at least 4 amino acids were found for all sequences. In the database, 29 matches were found for human proteins and ... Six published repetitive immunogenic amino acid sequences from the circumsporozoite (CS) antigen, ring-infected erythrocyte ...http://www.ajtmh.org/content/journals/10.4269/ajtmh.1987.37.258
Amino Acid Sequence Homology - Medical Dictionary online-medical-dictionary.org
Amino Acid Sequence Homology. The degree of similarity between sequences of Amino Acids. This information is useful for the ...http://www.online-medical-dictionary.org/definitions-a/amino-acid-sequence-homology.html
Three distinct types of GnRH rece... preview & related info | Mendeley
Sequence Homology, Amino Acid. *Substrate Specificity. *Transfection. Get free article suggestions today. Mendeley saves you ... Interestingly, bfGnRHR-2 has an 85% amino acid homology with Xenopus GnRHR. Less than 53% amino acid identity was observed ... The bfGnRHR-1, bfGnRHR-2, and bfGnRHR-3 proteins have an amino acid identity of approximately 30% to approximately 35% with ...https://www.mendeley.com/research-papers/three-distinct-types-gnrh-receptor-characterized-bullfrog/
mua-3, a gene required for mechanical tissue integrity in Caenorhabditis elegans, encodes a novel transmembrane protein of...
Sequence Analysis, DNA. Sequence Homology, Amino Acid. Grant Support. ID/Acronym/Agency: RR12596/RR/NCRR NIH HHS ... BLAST searches of the databanks using complete or partial MUA-3 amino acid sequence revealed a closely related C. elegans gene ... B) The domain/module structure of the MUA-3 protein as deduced from the predicted amino acid sequence. The two letter module ... amino acid sequence identity with MUA-3 in the shared portions of the extracellular domain. The cytoplasmic domains of MUA-3 ...http://www.biomedsearch.com/nih/mua-3-gene-required-mechanical/11470828.html
Spectral tuning of the long wavelength-sensitive cone pigment in four Australian marsupials.
Sequence Homology, Amino Acid. Chemical. Reg. No./Substance: 0/RNA, Messenger; 0/Rod Opsins; 0/long-wavelength opsin ... Amino Acid Sequence. Amino Acid Substitution. Animals. Australia. Base Sequence. Cloning, Molecular. Evolution, Molecular. ... Amino acid sequences reveal that substitutions at sites 277 and 285 are largely responsible for the spectral shifts in ... 24583213 - A novel continuous flow biosynthesis of caffeic acid phenethyl ester from alkyl caffeat.... 24884613 - An amino acid ...http://www.biomedsearch.com/nih/Spectral-tuning-long-wavelength-sensitive/16859843.html
Cloning and expression analysis of goldfish (Carassius auratus L.) prominin.
This report describes a prominin-like sequence and express ... Sequence Homology, Amino Acid. Chemical. Reg. No./Substance: 0/ ... Amino Acid Sequence. Animals. Antigens, CD / biosynthesis*, chemistry, genetics*. Base Sequence. Blotting, Southern / ... The predicted amino acid sequence for goldfish prominin shares all of the hallmark structural characteristics of the prominin ... however the relatedness assessed using the percent amino acid identity indicated that goldfish prominin cannot be placed into ...http://www.biomedsearch.com/nih/Cloning-expression-analysis-goldfish-Carassius/17123832.html
Molecular evolution of the vesicle coat component betaCOP in Toxoplasma gondii.
Molecular Sequence Data. Phylogeny. Protozoan Proteins / genetics*. Sequence Homology, Amino Acid. Species Specificity. ... Amino Acid Sequence. Animals. Base Sequence. Bayes Theorem. Cloning, Molecular. Coatomer Protein / genetics*. DNA Primers / ... A bioinformatic analysis of betaCOP amino acid sequences was conducted for 49 eukaryotic species. Cloning and sequence analysis ... In comparison, T. gondii exhibited subtle yet specific amino acid changes. The amino acid substitutions did not occur in the ...http://www.biomedsearch.com/nih/Molecular-evolution-vesicle-coat-component/17485226.html
Molecular basis for H3K36me3 recognition by the Tudor domain of PHF1.
Molecular Sequence Data. Sequence Homology, Amino Acid. Transcription Factors / chemistry, metabolism*. Grant Support. ... Amino Acid Sequence. DNA-Binding Proteins / chemistry, metabolism*. Histones / metabolism*. Humans. Models, Molecular. ... A comparison of the amino acid sequences of the histone peptides reveals that only H3K36 contains a basic residue (Lys37) ... 50 amino acids. The region encompassing the two PHD fingers of PHF1 has been shown to directly interact with the catalytic ...http://www.biomedsearch.com/nih/Molecular-basis-H3K36me3-recognition-by/23142980.html
Characterization of host-cell line specific glycosylation profiles of early transmitted/founder HIV-1 gp120 envelope proteins.
Molecular Sequence Data. Sequence Homology, Amino Acid. Surface Plasmon Resonance. Grant Support. ... Amino Acid Sequence. Animals. CHO Cells. Chromatography, Liquid. Cricetinae. Cricetulus. Glycosylation. HEK293 Cells. HIV ... 17586464 - Aggregation of seqa protein requires positively charged amino acids in the hinge region.. ...http://www.biomedsearch.com/nih/Characterization-Host-Cell-Line-Specific/23339644.html
Insights into the regulation of the human COP9 signalosome catalytic subunit, CSN5/Jab1.
Sequence Homology, Amino Acid. Ubiquitins / metabolism. Zinc / metabolism. Grant Support. ID/Acronym/Agency: R01 CA090853/CA/ ... Amino Acid Sequence. Arginine / chemistry. Catalytic Domain. Crystallography, X-Ray. Enzyme Activation. Humans. Intracellular ... Molecular Sequence Data. Mutagenesis, Site-Directed. Peptide Hydrolases / chemistry*, genetics, metabolism*. Protein ...http://www.biomedsearch.com/nih/Insights-into-regulation-human-COP9/23288897.html
Biochemical and molecular characterization of a hydroxyjasmonate sulfotransferase from Arabidopsis thaliana.
It is derived from the ubiquitously occurring jasmonic acid, an important signaling molecule mediating diver ... also known as tuberonic acid, was first isolated from Solanum tuberosum and was shown to have tuber-inducing properties. ... Sequence Homology, Amino Acid. Sulfotransferases / chemistry*, genetics*. Chemical. Reg. No./Substance: 0/Acetic Acids; 0/ ... Acetic Acids / chemistry, metabolism. Amino Acid Sequence. Arabidopsis / enzymology*. Arabidopsis Proteins / chemistry*, ...http://www.biomedsearch.com/nih/Biochemical-molecular-characterization-hydroxyjasmonate-sulfotransferase/12637544.html
Imperfect interface of Beclin1 coiled-coil domain regulates homodimer and heterodimer formation with Atg14L and UVRAG.
Molecular Sequence Data. Mutation. Protein Structure, Tertiary. Sequence Homology, Amino Acid. Static Electricity. Temperature ... Amino Acid Motifs. Amino Acid Sequence. Apoptosis Regulatory Proteins / metabolism*. Autophagy. Class III Phosphatidylinositol ... Another prominent feature of the Beclin 1 CC structure is the unusually high composition of charged amino acid residues, as ... Beclin 1 self-association is independent of autophagy induction by amino acid deprivation and rapamycin treatment. J. Cell ...http://www.biomedsearch.com/nih/Imperfect-interface-Beclin1-coiled-coil/22314358.html
Wright et al
Repetitive Sequences, Nucleic Acid. *Retrotransposons*. *Sequence Homology, Amino Acid. *Support, Non-U.S. Gov't ... A polymerase chain reaction assay was developed based on conserved amino acid sequences shared between the Ta11-1 reverse ... these sequences over most of their evolutionary history. One sequence, Ta17, is located in the mitochondrial genome. The ... DNA sequence analysis near the Arabidopsis thaliana ABI3 gene revealed the presence of a non-LTR retrotransposon insertion that ...http://genetics.mgh.harvard.edu/goodman/pub/wright_ref3.htm
Sequence Analysis, DNA. *Sequence Homology, Amino Acid. *Support, Non-U.S. Gov't ...http://genetics.mgh.harvard.edu/goodman/pub/zhang_pmb_ref5.htm
Potentiation of serum response factor activity by a family of myocardin-related transcription factors | PNAS
B) Amino acid sequence homology between myocardin and MRTFs. Colored bars correspond to the conserved regions shown in A. (C) ... The overall amino acid identity between the three proteins is ≈35%, whereas they share ,60% amino acid identity within the ... 6). The mouse myocardin protein sequence reported here has an additional 128 amino acid residues at the N terminus of the ... In the course of characterizing the MRTF sequences, we discovered that myocardin contains an additional 128 amino acids N- ...https://www.pnas.org/content/99/23/14855
Characterization of a 34-kilodalton protein of Mycobacterium leprae that is isologous to the immunodominant 34-kilodalton...
The DNA sequence predicted a signal peptide with a modified lipoprotein consensus sequence, but the protein proved to be devoid ... an open reading frame of 1.4 kb encoding a protein with some homology to the immunodominant 34-kDa protein of Mycobacterium ... During DNA sequence analysis of cosmid L373 from the Mycobacterium leprae genome, ... Sequence Homology, Amino Acid. Other identifiers:. View record in PubMed. Laboratories: UPCOL ...https://infoscience.epfl.ch/record/151285
mediaTUM - Medien- und Publikationsserver
Sequence Homology, Amino Acid; Two-Hybrid System Techniques «. Amino Acid Sequence; Ascomycota/physiology; Fluorescence ... Amino Acid Sequence; Ascomycota/physiology; Fluorescence Resonance Energy Transfer; GTPase-Activating Proteins/genetics/ ... Molecular Sequence Data; Mutation; Plant Diseases/genetics/microbiology; Plant Epidermis/cytology/metabolism/microbiology; ... Molecular Sequence Data; Mutation; Plant Diseases/genetics/microbiology; Plant Epidermis/cytology/metabolism/microbiology; ...http://mediatum.ub.tum.de/1379817
X-ray structure of two crystalline forms of a streptomycete ribonuclease with cytotoxic activity. | CureHunter
Sequence Homology, Amino Acid. *Streptomyces aureofaciens (enzymology) *Temperature. *Tumor Cells, Cultured. *X-Ray Diffraction ...http://www.curehunter.com/public/pubmed12228255.do
Xpert search results for International Classification of Function, Disability and%
4.2 Amino acid sequence homologies and why they occur. In this unit we explore how proteins are the 'doers' of the cell. They ...https://www.nottingham.ac.uk/xpert/scoreresults.php?keywords=International%20Classification%20of%20Function,%20Disability%20and%25&start=3860&end=3880
Xpert search results for Understanding contemporary socie
4.2 Amino acid sequence homologies and why they occur. In this unit we explore how proteins are the 'doers' of the cell. They ...https://www.nottingham.ac.uk/xpert/scoreresults.php?keywords=Understanding%20contemporary%20socie&start=3240&end=3260
Contig sequences and their annotation (amino acid sequence and results of homology search), and expression profile - Dicty cDB ...
... amino acid sequence and results of homology search), and expression profile ... Representative amino acid sequence translated from DNA sequence.. Translated Amino Acid sequence (All Frames). Amino acid ... Contig sequences and their annotation (amino acid sequence and results of homology search), and expression profile Data detail ... Contig sequences and their annotation (amino acid sequence and results of homology search), and expression profile. ...https://dbarchive.biosciencedbc.jp/en/dicty-cdb/data-2.html
Morphological characteristics of PRPF8 mutants and dele | Open-i
Molecular Sequence Data. *Real-Time Polymerase Chain Reaction. *Sequence Homology, Amino Acid ... Whole-RNA deep sequencing of primary cells from patients with PRPF8 abnormalities demonstrated consistent missplicing defects. ... Whole-RNA deep sequencing of primary cells from patients with PRPF8 abnormalities demonstrated consistent missplicing defects. ... cases were found in AML and conveyed poor prognosis.Whole-RNA deep sequencing of primary cells from patients with PRPF8 ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC4214909_nihms588443f2&req=4
Confocal images of COS-7 cells expressing mutant Tiam1 | Open-i
Sequence Homology, Amino Acid*. *Tumor Suppressor Proteins*. Minor. *3T3 Cells. *Animals. *Blood Proteins/genetics ... Indicated in blue is the myristoylation signal from c-Src (MS), containing the NH2-terminal 20 amino acids. In the merged ... Indicated in blue is the myristoylation signal from c-Src (MS), containing the NH2-terminal 20 amino acids. In the merged ... Tiam1 contains a Dbl homology (DH) domain and adjacent pleckstrin homology (PH) domain, hallmarks for activators of Rho-like ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2139766_JCB.michiels6m&req=4
FORCASP • View topic - Please Help: Tertiary Protein Structure Prediction
I have added some hypothetical linker amino acids to the C-. termial of one of the DsRed in the tetrameric structure; however, ... I have also utilized sequence based homology modeling, but. that only predicts structure for one of the domain relative to the ... structure of a fluorescent protein with a sequence homology to know. fluorescent proteins, such as GFP and DsRed. The protein ... modeling present the prospect of nearly automatic model building for a large fraction of newly determined protein sequences. ...http://www.predictioncenter.org/forcasp/viewtopic.php?f=24&t=245