mediaTUM - Medien- und PublikationsservermediaTUM - Medien- und Publikationsserver

Sequence Deletion; Species Specificity; Ustilago/genetics/physiology «. Autophagy; Caspase 3/genetics/metabolism; Cell Death; ... By contrast, the epidermal cell death response triggered by pep1 deletion mutants was not impaired by BI-1. Hypersensitive- ...
more infohttp://mediatum.ub.tum.de/1379819

Periodic Fever Syndromes Panel, Sequencing and Deletion/Duplication | ARUPConsultPeriodic Fever Syndromes Panel, Sequencing and Deletion/Duplication | ARUPConsult

Periodic Fever Syndromes Panel, Sequencing and Deletion/Duplication Periodic Fever Syndromes Panel, Sequencing and Deletion/ ... Deletions/duplications/insertions of any size by massively parallel sequencing. *Deletions/duplications less than 1kb in the ... All Test Fact Sheets › Periodic Fever Syndromes Panel, Sequencing and Deletion/Duplication ... Single exon deletions/duplications in the following exons: *LPIN2 (NM_014646) 13, 16; MVK (NM_000431) 11; PSTPIP1 (NM_001321136 ...
more infohttps://arupconsult.com/ati/Periodic-Fever-Syndromes-Panel

Aortopathy Panel, Sequencing and Deletion/Duplication | ARUPConsult Lab Test SelectionAortopathy Panel, Sequencing and Deletion/Duplication | ARUPConsult Lab Test Selection

Aortopathy Panel, Sequencing and Deletion/Duplication Aortopathy Panel, Sequencing and Deletion/Duplication 2006540. Method: ... Deletions/duplications/insertions of any size by massively parallel sequencing. *Deletions/duplications less than 1kb in the ... Marfan Syndrome (FBN1) Sequencing and Deletion/Duplication 2005584. Method: Polymerase Chain Reaction/Sequencing/Multiplex ... Loeys-Dietz Syndrome (TGFBR1 and TGFBR2) Sequencing 2002705. Method: Polymerase Chain Reaction/Sequencing ...
more infohttps://arupconsult.com/ati/Aortopathy-Panel

Sequence Deletion | The Chopra LibrarySequence Deletion | The Chopra Library

Here, we report a patient with DKC who inherited 2 distinct TERC sequence variants from her parents; a deletion (216_229del) in ... Using two genetically marked viral genomes with two VPg sequences, we now provide evidence that this deletion occurs via ... Insertions or deletions (indels) of amino acids residues have been recognized as an important source of genetic and structural ... However, these signature sequences have not so far been extensively investigated amongst orthologous Bcl-2 family proteins. ...
more infohttp://admin.isharonline.org/tags/sequence-deletion

Holoprosencephaly Panel, Sequencing and Deletion/DuplicationHoloprosencephaly Panel, Sequencing and Deletion/Duplication

Compliance Statement C: For human genetic inheritable conditions and mutations. This test was developed and its performance characteristics determined by ARUP Laboratories. The U. S. Food and Drug Administration has not approved or cleared this test; however, FDA clearance or approval is not currently required for clinical use. The results are not intended to be used as the sole means for clinical diagnosis or patient management decisions ...
more infohttp://ltd.aruplab.com/tests/pub/2008848

CDKL5-Related Disorders (CDKL5) Sequencing and Deletion/DuplicationCDKL5-Related Disorders (CDKL5) Sequencing and Deletion/Duplication

Background Information for CDKL5-Related Disorders (CDKL5) Sequencing and Deletion/Duplication:. Characteristics: Vary widely ... The breakpoints of large deletions/duplications will not be determined.. Compliance Statement C: For human genetic inheritable ... Methodology: Bidirectional sequencing of the CDKL5 coding region and intron-exon boundaries. Multiplex ligation-dependent probe ... Analytical Sensitivity and Specificity of Sequencing and MLPA: 99 percent. Limitations: Diagnostic errors can occur due to rare ...
more infohttp://ltd.aruplab.com/tests/pub/2004935

Nf1 Sequencing And Deletion/duplication - Quest Diagnostics Nichols Institute of ValenciaNf1 Sequencing And Deletion/duplication - Quest Diagnostics Nichols Institute of Valencia

Methodology: Massively Parallel Sequencing. Report available: 12 days from completed pre-authorization. ...
more infohttp://specialtylabs.com/tests/details.asp?id=93941

CDH1 Sequencing and Deletion/Duplication - Quest Diagnostics Nichols Institute of ValenciaCDH1 Sequencing and Deletion/Duplication - Quest Diagnostics Nichols Institute of Valencia

Sequencing and deletion/duplication analyses of the CDH1 gene will identify individuals at risk for CHD1-related cancers. ...
more infohttp://www.specialtylabs.com/tests/details.asp?id=92568

Stk11 Sequencing And Deletion/duplication - Quest Diagnostics Nichols Institute of ValenciaStk11 Sequencing And Deletion/duplication - Quest Diagnostics Nichols Institute of Valencia

Sequencing and deletion/duplication analyses of the STK11 gene will identify individuals who are affected with PJS and ...
more infohttp://specialtylabs.com/tests/details.asp?id=92565

Identifying direct repeats in flanking sequences of deletionsIdentifying direct repeats in flanking sequences of deletions

Now, I want to find out if deletions are flanked by direct repeats. I.e, for each individual deletion, are direct repeats ... Why is the noise level higher in regions with amplification than regions with deletion in the genome? Hi all, I am writing a ... Is there a more efficient way of checking multiple sequences for how many hits they have in the human genome? Currently Im ... Question about non-polymorphic site and flanking sequence. Hi. I have studied genetic variation and something ambiguous terms ...
more infohttps://www.biostars.org/p/357849/

Sprites:  detection of deletions from sequencing data by re-aligning split readsSprites: detection of deletions from sequencing data by re-aligning split reads

There are three types of deletions: blunt deletions, deletions with microhomologies and deletions with microsinsertions. The ... It is highly appealing to develop sensitive and accurate methods to detect deletions from sequencing data, especially deletions ... Sprites: detection of deletions from sequencing data by re-aligning split reads. ... Furthermore, finding deletions from sequencing data remains challenging. ...
more infohttps://insights.ovid.com/bioinf/201632120/00124336-201632120-00005

Replication error deficient and proficient colorectal cancer gene expression differences caused by 3UTR polyT sequence...Replication error deficient and proficient colorectal cancer gene expression differences caused by 3'UTR polyT sequence...

Sequence analysis of the 3UTRs of a selection of the most differentially expressed genes shows that they all contain deletions ... Analysis of the incidence of mononucleotide repeat sequences in the 3UTRs, 5UTRs, and coding sequences of those genes most ... are found in the 3UTR sequence of most genes. The relevant sequences are typically A/U-rich elements or U repeats. Microarray ... These cancers are typically pseudodiploid, accumulate mutations in repetitive sequences as a result of their mismatch repair ...
more infohttps://www.rdm.ox.ac.uk/publications/179140

Global fitness profiling of fission yeast deletion strains by barcode sequencing.  - PubMed - NCBIGlobal fitness profiling of fission yeast deletion strains by barcode sequencing. - PubMed - NCBI

Here we use deep sequencing to accurately characterize the barcode sequences in the deletion library, thus enabling the ... The barcodes were sequenced in two separate sequencing runs. The sequence read numbers were normalized by total numbers of ... Barcode sequencing of thiabendazole-treated deletion library led to the identification of a previously uncharacterized gene ... Auxotrophic mutants were revealed by barcode sequencing. (a) The growth inhibition scores (GI) of the deletion mutants grown in ...
more infohttps://www.ncbi.nlm.nih.gov/pubmed/20537132?dopt=Abstract

Inria - Modelling Intermolecular Structures and Defining Ambiguity in Gene Sequences using Matrix Insertion-Deletion SystemsInria - Modelling Intermolecular Structures and Defining Ambiguity in Gene Sequences using Matrix Insertion-Deletion Systems

In [2], the ambiguity in gene sequence was defined as deriving more than one structure for a single gene sequence. Here, we ... A gene sequence is obtained by more than one way such that their intermediate sequences are different. We further classify the ... Recently, in [6], a new computing model named Matrix insertion-deletion system has been introduced to model various bio- ... a computing model has been formulated in formal language theory known as insertion-deletion systems. ...
more infohttps://hal.inria.fr/hal-00659487

List Element Deletion - Sequence Mutation  and Accumulation Patterns | CourseraList Element Deletion - Sequence Mutation and Accumulation Patterns | Coursera

List Element Deletion. Para ver este video, habilita JavaScript y considera la posibilidad de actualizar tu navegador a una ... Sequence Mutation and Accumulation Patterns. In week four we will present deeper knowledge on using lists, strings, and python ...
more infohttps://es.coursera.org/lecture/python-basics/list-element-deletion-E0WjP

21 New Sequencing and Deletion / Duplication Tests Added | Connective Tissue Gene Tests21 New Sequencing and Deletion / Duplication Tests Added | Connective Tissue Gene Tests

March 5, 2015 - Connective Tissue Gene Tests (CTGT) is pleased to announce 21 new Sequencing and Deletion / Duplication tests. ...
more infohttp://ctgt.net/news/21-new-sequencing-and-deletion-duplication-tests-added-0

Nucleotide sequence and deletion analysis of the xylanase gene (xynZ) of Clostridium thermocellum. - CORENucleotide sequence and deletion analysis of the xylanase gene (xynZ) of Clostridium thermocellum. - CORE

Nucleotide sequence and deletion analysis of the xylanase gene (xynZ) of Clostridium thermocellum. By O Grépinet, M C Chebrou ... The nucleotide sequence of the xynZ gene, encoding the extracellular xylanase Z of Clostridium thermocellum, was determined. ... Deletions removing up to 508 codons from the 5 end of the gene did not affect the activity of the encoded polypeptide, showing ...
more infohttps://core.ac.uk/display/3295781

Mutations that suppress the deletion of an upstream activating sequence in yeast: involvement of a protein kinase and histone...Mutations that suppress the deletion of an upstream activating sequence in yeast: involvement of a protein kinase and histone...

Mutations that suppress the deletion of an upstream activating sequence in yeast: involvement of a protein kinase and histone ... Mutations that suppress the deletion of an upstream activating sequence in yeast: involvement of a protein kinase and histone ... Mutations that suppress the deletion of an upstream activating sequence in yeast: involvement of a protein kinase and histone ... Mutations that suppress the deletion of an upstream activating sequence in yeast: involvement of a protein kinase and histone ...
more infohttps://www.genetics.org/content/135/3/665?ijkey=1913df4c5dd8974e762b6b873d70f0385c0faef5&keytype2=tf_ipsecsha

Sequence Similarity 









- 1F0F: Cecropin A(1-8)-magainin 2(1-12) gig deletion modification in dodecylphosphocholine...Sequence Similarity - 1F0F: Cecropin A(1-8)-magainin 2(1-12) gig deletion modification in dodecylphosphocholine...

Structures of protein chains with identical sequences (sequence identity > 95%) are aligned, superimposed and clustered. ... Sequence Similarity Clusters for the Entities in PDB 1F0F Legend Entity #1 , Chains: A CECROPIN A-MAGAININ 2 HYBRID PEPTIDE ... Blast this sequence against all of PDB Archive.. Rank. In each cluster, the chains are sorted (i.e. ranked) according to the ... In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff. ...
more infohttp://www.rcsb.org/pdb/explore/sequenceCluster.do?structureId=1F0F

Additional file 1: Table S1. of Exome sequencing reveals independent SGCD deletions causing limb girdle muscular dystrophy in...Additional file 1: Table S1. of Exome sequencing reveals independent SGCD deletions causing limb girdle muscular dystrophy in...

of Exome sequencing reveals independent SGCD deletions causing limb girdle muscular dystrophy in Boston terriers ... of Exome sequencing reveals independent SGCD deletions causing limb girdle muscular dystrophy in Boston terriers. 2017-07-11T05 ...
more infohttps://figshare.com/articles/Additional_file_1_Table_S1_of_Exome_sequencing_reveals_independent_SGCD_deletions_causing_limb_girdle_muscular_dystrophy_in_Boston_terriers/5197654/1

Global fitness profiling of fission yeast deletion strains by barcode sequencing | Genome Biology | Full TextGlobal fitness profiling of fission yeast deletion strains by barcode sequencing | Genome Biology | Full Text

Here we use deep sequencing to accurately characterize the barcode sequences in the deletion library, thus enabling the ... quantitative measurement of the fitness of fission yeast deletion strains by barcode sequencing. ... A genome-wide deletion library is a powerful tool for probing gene functions and one has recently become available for the ... Column D, uptag sequences. Column E, dntag sequences. (XLS 401 KB). Additional file 4: Barcodes used by more than one deletion ...
more infohttps://genomebiology.biomedcentral.com/articles/10.1186/gb-2010-11-6-r60

Penalizing Insertions and Deletions in Sequence Alignment  - Week 3: Advanced Topics in Sequence Alignment | CourseraPenalizing Insertions and Deletions in Sequence Alignment - Week 3: Advanced Topics in Sequence Alignment | Coursera

Penalizing Insertions and Deletions in Sequence Alignment Pour visualiser cette vidéo, veuillez activer JavaScript et envisagez ... SOUND] So now we will discuss how to penalize insertions and deletions in sequence alignment in a more sophisticated way. ... In the first half of the course, we will compare two short biological sequences, such as genes (i.e., short sequences of DNA) ... where n is a length of sequences which we are trying to compare. Since sequence alignment algorithms run time is proportional ...
more infohttps://fr.coursera.org/lecture/comparing-genomes/penalizing-insertions-and-deletions-in-sequence-alignment-nnBE7

IDENTIFICATION AND CLINICAL ASSESSMENT OF DELETION STRUCTURAL VARIANTS IN WHOLE GENOME SEQUENCES OF ACUTELY ILL NEONATESIDENTIFICATION AND CLINICAL ASSESSMENT OF DELETION STRUCTURAL VARIANTS IN WHOLE GENOME SEQUENCES OF ACUTELY ILL NEONATES

... ... Deletion structural variants (SVs) 50 nucleotides are implicated in many genetic diseases and with WGS data can now be ... Pipeline usage in 10 proband family sets revealed a possibly causative deletion SV in the MMP21 gene for two siblings. MMP21 is ... CONCLUSIONS The identification of deletion SVs has the potential to increase the diagnostic yield of WGS data. The methods ...
more infohttps://kuscholarworks.ku.edu/handle/1808/14508

Sequence Similarity 









- 1A27: HUMAN 17-BETA-HYDROXYSTEROID-DEHYDROGENASE TYPE 1 C-TERMINAL DELETION MUTANT COMPLEXED...Sequence Similarity - 1A27: HUMAN 17-BETA-HYDROXYSTEROID-DEHYDROGENASE TYPE 1 C-TERMINAL DELETION MUTANT COMPLEXED...

Structures of protein chains with identical sequences (sequence identity > 95%) are aligned, superimposed and clustered. ... Sequence Similarity Clusters for the Entities in PDB 1A27 Legend Entity #1 , Chains: A 17-BETA-HYDROXYSTEROID-DEHYDROGENASE ... Blast this sequence against all of PDB Archive.. Rank. In each cluster, the chains are sorted (i.e. ranked) according to the ... In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff. ...
more infohttps://www.rcsb.org/pdb/explore/sequenceCluster.do?structureId=1A27