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*  Microbiology Society Journals | Microbacterium hydrothermale sp. nov., an actinobacterium isolated from hydrothermal sediment
DNA-DNA hybridization experiments with strain 0704C9-2T and its closest relative, M. testaceum DSM 20166T, revealed a low ... It exhibited highest 16S rRNA gene sequence similarity with Microbacterium testaceum DSM 20166T (98.4 %). Levels of similarity ... reassociation value of 42.9 %. The DNA G+C content of strain 0704C9-2T was 73.3 mol%. The cell-wall peptidoglycan contained ... Comparative 16S rRNA gene sequence analysis revealed that strain 0704C9-2T belonged to the genus Microbacterium . ...
http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.061697-0
*  Protein and RNA multiple sequence alignment, protein secondary structure prediction, trees, sub-family and function analysis...
RNA and DNA. ... Day 2 focuses on using Jalview for RNA sequence analysis, and ... Jalview is free software for protein and nucleic acid sequence alignment generation, visualisation and analysis. It includes ... Day 1 is an introduction to protein multiple sequence alignment editing and analysis with Jalview. ... Protein and RNA multiple sequence alignment, protein secondary structure prediction, trees, sub-family and function analysis ...
http://www.jalview.org/training/training-courses/Protein-and-RNA-multiple-sequence-alignment-protein-secondary-structure
*  Ancestral Sequence Reconstruction - Oxford Scholarship
As a powerful tool for testing evolutionary and ecological hypotheses, as well as uncovering the link between sequence and ... The book concludes with a description of the scientific questions where experimental ancestral sequence reconstruction has been ... Further chapters provide a detailed discussion on taking computationally reconstructed sequences and synthesizing them in the ... which provides a detailed discussion of the available methods for reconstructing ancestral sequences (including their ...
http://www.oxfordscholarship.com/view/10.1093/acprof:oso/9780199299188.001.0001/acprof-9780199299188?rskey=3FXmdS&result=9
*  Patente US5538871 - In situ polymerase chain reaction - Google Patentes
... or by adding to the PCR reagents a single-stranded DNA binding protein which blocks reaction at temperatures below about 50 C. ... a process of in vitro enzymatic amplification of specific nucleic acid sequences within the cells where they originate, can be ... Furthermore, PCR permits the rapid and highly sensitive qualitative and even quantitative analysis of nucleic acid sequences, ... SEQUENCE LISTING(1) GENERAL INFORMATION:(iii) NUMBER OF SEQUENCES: 7(2) INFORMATION FOR SEQ ID NO: 1:(i) SEQUENCE ...
http://www.google.es/patents/US5538871
*  Microbiology Society Journals | Ferrimonas marina sp. nov.
16S rRNA gene sequence similarity ,99·5 %, gyrB gene sequence similarity ,97·8 %), and were most closely related to Ferrimonas ... balearica (16S rRNA gene sequence similarity 97·1-97·3 %, gyrB gene sequence similarity 84·4-85·0 %). Chemotaxonomic data ( ... An analysis of the nearly complete 16S rRNA gene sequences of these new isolates indicated that they were phylogenetically ... An analysis of the nearly complete 16S rRNA gene sequences of these new isolates indicated that they were phylogenetically ...
http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.63689-0
*  Patent US5200313 - Nucleic acid hybridization assay employing detectable anti-hybrid antibodies - Google Patents
A nucleic acid hybridization assay employing an immobilized or immobilizable polynucleotide probe selected to form DNA.RNA or ... RNA.RNA hybrids with the particular polynucleotide sequence to be determined. Resulting hybrids are detected by binding of an ... Method of DNA analysis using micro/nanochannel. US20070172819 *. 29 Dec 2006. 26 Jul 2007. Hardin Susan H. Enzymatic nucleic ... C. Preparation of Antibody to DNA.RNA Hybrid. A DNA.RNA hybrid is prepared by transcription of φX174 virion DNA with RNA ...
http://www.google.ca/patents/US5200313
*  Difference between revisions of "CH391L/S13/Ancestral Sequence Reconstruction" - OpenWetWare
Ancestral Sequence Reconstruction refers to the construction of hypothesized protein or DNA sequences belonging to a common ... experimental analysis of extinct molecules. Nature reviews. Genetics, 5(5), 366-75. doi:10. .. 1038/nrg1324]. ... The amino-acid sequence in each case was determined by maximum likelihood inference from 200 extant sequences. The genes to ... Sequence information (Nucleic Acid and Protein) from extant species can be used to infer the sequences of common ancestor ...
https://openwetware.org/wiki/?title=CH391L/S13/Ancestral_Sequence_Reconstruction&diff=679126&oldid=678991
*  Microbiology Society Journals | Chitinophaga qingshengii sp. nov., isolated from weathered rock surface
The genomic DNA G+C content of strain JN246T was 48.8 mol%. Based on the low level of DNA-DNA relatedness of strain JN246T ( ... 16S rRNA gene sequence similarity), Chitinophaga terrae KP01T (96.8 %), and Chitinophaga jiangningensis JN53T (96.3 %). The ... On the basis of 16S rRNA gene sequence analysis, strain JN246T belonged to the genus Chitinophaga and the closest phylogenetic ... On the basis of 16S rRNA gene sequence analysis, strain JN246T belonged to the genus Chitinophaga and the closest phylogenetic ...
http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.070516-0
*  CH391L/S13/Ancestral Sequence Reconstruction - OpenWetWare
Ancestral Sequence Reconstruction refers to the construction of hypothesized protein or DNA sequences belonging to a common ... Resurrecting ancient genes: experimental analysis of extinct molecules. Nat Rev Genet. 2004 May;5(5):366-75. DOI:10.1038/ ... The amino-acid sequence in each case was determined by maximum likelihood inference from 200 extant sequences. The genes to ... Sequence information (Nucleic Acid and Protein) from extant species can be used to infer the sequences of common ancestor ...
https://openwetware.org/wiki/?title=CH391L/S13/Ancestral_Sequence_Reconstruction&oldid=678930
*  Microbiology Society Journals | Gordonia hankookensis sp. nov., isolated from soil
The DNA G+C content was 66.9 mol%. Strain ON-33T exhibited a DNA-DNA relatedness value of 13 % to G. soli DSM 44995T and could ... with which it exhibited 16S rRNA gene sequence similarity of 98.5 %. The chemotaxonomic properties of strain ON-33T were ... Strain ON-33T grew optimally at pH 7.0-7.5 and 30 °C. A neighbour-joining phylogenetic tree based on 16S rRNA gene sequences ... Stackebrandt, E. & Goebel, B. M. ( 1994 ). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in ...
http://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.011585-0
*  Difference between revisions of "CH391L/S13/Ancestral Sequence Reconstruction" - OpenWetWare
Ancestral Sequence Reconstruction refers to the construction of hypothesized protein or DNA sequences belonging to a common ... Resurrecting ancient genes: experimental analysis of extinct molecules. Nat Rev Genet. 2004 May;5(5):366-75. DOI:10.1038/ ... Ancestral Sequence Reconstruction refers to the construction of hypothesized protein or DNA sequences belonging to a common ... Sequence information (Nucleic Acid and Protein) from extant species can be used to infer the sequences of common ancestor ...
https://openwetware.org/wiki/?title=CH391L/S13/Ancestral_Sequence_Reconstruction&curid=130605&diff=677290&oldid=677281
*  PCR Primers for Metazoan Mitochondrial 12S Ribosomal DNA Sequences
Unlike microbial studies, where analysis of the 16S ribosomal DNA sequence is standard, the best gene for metazoan metagenetics ... Alignment of sequences was performed for the excised mitochondrial 12S ribosomal DNA sequences, and conserved regions were ... In this study we designed a set of PCR primers for the mitochondrial 12S ribosomal DNA sequence based on 64 complete ... DNA primers have considerable potential for metazoan metagenetic analysis because of their ability to amplify sequences from ...
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0035887
*  Ancestral reconstruction - Wikipedia
For example, PAML is a collection of programs for the phylogenetic analysis of DNA and protein sequence alignments by maximum ... These states include the genetic sequence (ancestral sequence reconstruction), the amino acid sequence of a protein, the ... The Bayesian analysis of genetic sequences may confer greater robustness to model misspecification. MrBayes allows inference of ... Rather than inferring the ancestral DNA sequence, one may be interested in the larger-scale molecular structure and content of ...
https://en.wikipedia.org/wiki/Ancestral_reconstruction
*  Exon: A Web-Based Software Toolkit for DNA Sequence Analysis | SpringerLink
Recent advances in DNA sequencing methodologies have caused an exponential growth of publicly available genomic sequence data. ... web-based software toolkit DNA sequence analysis DNA compression This is a preview of subscription content, log in to check ... Pratas D., Pinho A.J., Garcia S.P. (2012) Exon: A Web-Based Software Toolkit for DNA Sequence Analysis. In: Rocha M., Luscombe ... Dix, T.I., Powell, D.R., Allison, L., Bernal, J., Jaeger, S., Stern, L.: Comparative analysis of long DNA sequences by per ...
https://link.springer.com/chapter/10.1007/978-3-642-28839-5_25
*  DNA/PROTEIN SEQUENCE ANALYSIS PACKAGE FOR IBM VM/CMS
... Gigi Murphy MCBKANGI at nusvm.bitnet Fri May 4 16:29:30 EST 1990 * ... I am trying to set up a DNA/Protein sequence analysis software on our University IBM 3081 or IBM 3090 running VM/CMS since our ...
http://www.bio.net/bionet/mm/bioforum/1990-May/002105.html
*  Download Bioinformatics For Dna Sequence Analysis
download bioinformatics for dna of Heterocyclic Compounds An golden tam of single quae and causes. ... Each download bioinformatics for dna runs a many understanding, with hands being 3,4-dimethyl-3-penten-2-one and certain ... download bioinformatics for dna sequence analysis of similar divisions thermodynamic esse of single ideas and parts. ... 2019; d objects of download bioinformatics for dna and resemblance. This download bioinformatics for dna sequence analysis of ...
http://sftv.org/books/download-bioinformatics-for-dna-sequence-analysis.htm
*  Frontiers | DNA Sequence Analysis in Clinical Medicine, Proceeding Cautiously | Molecular Biosciences
Also discussed are important recent diagnostic applications of DNA sequencing in cancer, including analysis of tumor derived ... Also discussed are important recent diagnostic applications of DNA sequencing in cancer, including analysis of tumor derived ... Pharmogenetic variants detected by DNA sequence analysis are gaining in importance and are particularly relevant to ... Applications involving analysis of cell free DNA in maternal DNA for prenatal diagnosis of specific autosomal trisomies are ...
https://www.frontiersin.org/articles/10.3389/fmolb.2017.00024/full
*  Sequencher DNA Sequence Analysis Software from Gene Codes Corporation
DNA SEQUENCE ANALYSIS - SANGER OR NGS. Sequencher DNA Sequence Analysis Software is an indispensable tool for the benchtop ... With powerful analyses and rich visualizations, it has a unique paradigm where every analysis is an experiment that make your ... Next-Gen Sequencing (NGS), and RNA-Seq sequence data. Come see what Sequencher can do for you, Power with Simplicity. ... RNA-SEQ OR MICROARRAY DATA ANALYSIS CodeLinker is a user-friendly and powerful desktop software program for analyzing your RNA- ...
http://genecodes.com/?gclid=CK3nrbDRwK8CFUx0mAodr2qVyg
*  Sequencher DNA Sequence Analysis Software from Gene Codes Corporation
Sanger DNA Analysis. Sequencher's extensive Sanger analysis features are the foundation it was built upon. Customizable from ... Easily use consensus sequences from the Project Window as a reference sequence for NGS alignments for hybrid sequencing ... NEXT-GENERATION DNA SEQUENCING (NGS). Sequencher empowers the benchtop scientist by bringing the latest peer-reviewed NGS ... Send primer pair sequences from Primer-BLAST runs in Sequencher Connections to your Sequencher project. ...
https://www.genecodes.com/
*  Computer science graduate develops models for DNA sequence analysis : Office of Media Relations : Texas State University
His other research focus is using computers for DNA analysis to prevent disease.. More than 99 percent of the DNA in every ... Computer science graduate develops models for DNA sequence analysis ... Computer science graduate develops models for DNA sequence analysis ... Two broad areas that Huston's research focuses are developing computer models for cellular networks and performing DNA analysis ...
http://www.txstate.edu/news/news_releases/news_archive/2007/04/EvanHuston042507.html
*  Sequencing Analysis of Tumor DNA: Is It All in the Plasma? - The ASCO Post
Sequencing Analysis of Tumor DNA: Is It All in the Plasma?. By Britta Weigelt, PhD, and Jorge S. Reis-Filho, MD, PhD, FRCPath. ... Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA. Nature 497:108-112, 2013. ... Sequencing analysis of ctDNA has been envisaged as a means to overcome the challenges posed by intratumor and interlesion ... 7. Dawson SJ, Tsui DW, Murtaza M, et al: Analysis of circulating tumor DNA to monitor metastatic breast cancer. N Engl J Med ...
http://www.ascopost.com/issues/september-15-2014/sequencing-analysis-of-tumor-dna-is-it-all-in-the-plasma/
*  Honors College Thesis | Exploring phylogeny of Rhodococcus fascians isolates using 16S ribosomal DNA sequence analysis | ID:...
Exploring phylogeny of Rhodococcus fascians isolates using 16S ribosomal DNA sequence analysis Public ... Partial 16S rDNA sequences from the preliminary analysis were used to identify related database sequences of R. fascians ... sequence analysis with sequence primers designed to amplify specific regions of R. fascians 16S rDNA. A preliminary set of 21 ... Phylogenetic analysis contained 84 R. fascians rDNA sequences; 70 Plant Clinic isolates, 14 related database isolates, and an ...
https://ir.library.oregonstate.edu/concern/honors_college_theses/1831cm81v?locale=en
*  Phylogeography of the Siberian newt Salamandrella keyserlingii by mitochondrial DNA sequence analysis, Russian Journal of...
"Phylogeography of the Siberian newt Salamandrella keyserlingii by mitochondrial DNA sequence analysis, Russian Journal of ... Phylogeography of the Siberian newt Salamandrella keyserlingii by mitochondrial DNA sequence analysis. Poyarkov, N.; Kuzmin, S. ... Phylogeography of the Siberian newt Salamandrella keyserlingii by mitochondrial DNA sequence analysis. Phylogeography of the ... Mitochondrial DNA Rates and Biogeography in European Newts Genus Euproctus Caccone, A.; Milinkovitch, M.C.; Sbordoni, V.; ...
https://www.deepdyve.com/lp/springer_journal/phylogeography-of-the-siberian-newt-salamandrella-keyserlingii-by-ENYzpggG0B
*  A highly conserved genomic region in baculoviruses: sequence analysis of an 11.3 kbp DNA fragment (46.5-55.1 m.u.) of the...
A highly conserved genomic region in baculoviruses: sequence analysis of an 11.3 kbp DNA fragment (46.5-55.1 m.u.) of the ...
http://library.wur.nl/WebQuery/wurpubs/42335
*  "Sequence Analysis of Bacterial DNA in the Colon and Stomach of the Tyr" by Raul J. Cano, Friedrich Tiefenbrunner et al.
The sequence data were finally used for scanning data libraries containing the corresponding sequences of present-day bacteria ... tissue samples aseptically taken from the stomach and the colon of the mummy were utilized for DNA extraction, and the DNA was ... The results are discussed in light of what is known about the preservation of microbial DNA at the Iceman's site and of ... The PCR products were cloned in plasmid vectors, and the recombinant clones (amplicons) were sequenced. ...
https://digitalcommons.calpoly.edu/bio_fac/362/