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*  Protein and RNA multiple sequence alignment, protein secondary structure prediction, trees, sub-family and function analysis...
Day 2 focuses on using Jalview for RNA sequence analysis, and also integrating cDNA and protein analysis and covers more ... Jalview is free software for protein and nucleic acid sequence alignment generation, visualisation and analysis. It includes ... Day 1 is an introduction to protein multiple sequence alignment editing and analysis with Jalview. ... Protein and RNA multiple sequence alignment, protein secondary structure prediction, trees, sub-family and function analysis ...
http://www.jalview.org/training/training-courses/Protein-and-RNA-multiple-sequence-alignment-protein-secondary-structure
*  Inference of Transcriptional Networks in Arabidopsis through Conserved Noncoding Sequence Analysis | Plant Cell
Inference of Transcriptional Networks in Arabidopsis through Conserved Noncoding Sequence Analysis. Jan Van de Velde, Ken S. ... Inference of Transcriptional Networks in Arabidopsis through Conserved Noncoding Sequence Analysis. Jan Van de Velde, Ken S. ... Inference of Transcriptional Networks in Arabidopsis through Conserved Noncoding Sequence Analysis. Jan Van de Velde, Ken S. ... Inference of Transcriptional Networks in Arabidopsis through Conserved Noncoding Sequence Analysis Message Subject (Your Name) ...
http://www.plantcell.org/content/26/7/2729.short
*  Sequence analysis - Wikipedia
According to Michael Levitt, sequence analysis was born in the period from 1969-1977. In 1969 the analysis of sequences of ... Pair-wise sequence alignment only compares two sequences at a time and multiple sequence alignment compares many sequences. Two ... Machine Clustering Bayesian Network Regression Analysis Sequence mining Alignment-free sequence analysis List of sequence ... In bioinformatics, sequence analysis is the process of subjecting a DNA, RNA or peptide sequence to any of a wide range of ...
https://en.wikipedia.org/wiki/Sequence_analysis
*  sequence analysis
Microbiome sequence analysis-whole metagenomic shotgun and 16S rRNA sequence. Shane Jensen. Sequence-based factors that ... Whole genome and exome sequence analysis across ethnically diverse humans. Benjamin Voight. Discovery of pathogenic, rare, non- ... OrthoMCL for ortholog groups of protein sequences. Kai Tan. Our lab is interested in Systems Biology of gene regulation in ... Development of whole genome sequencing technologies for microbes in complex communities. Rick Bushman. Human microbiome, HIV, ...
http://www.med.upenn.edu/gcb/sequenceanalysis.shtml
*  Sequence Analysis | WZB
In quantitative analyses, we analyse nominal and continuous variables, or so we are taught. For example: is a country ... Sequence analysis, originally developed in biology to analyse DNA sequences, is a longitudinal method that allows to analyse ... Aisenbrey & A. E. Fasang (2010). 'New Life for Old Ideas: The "Second Wave" of Sequence Analysis Bringing the "Course" Back ... In quantitative analyses, we analyse nominal and continuous variables, or so we are taught. For example: is a country ...
https://wzb.eu/de/veranstaltungen/sequence-analysis
*  ChIP-Sequencing Analysis: Applications
... combines chromatin immunoprecipitation with real-time next generation sequencing to identify genomic binding sites that ... Precise analysis of DNA-protein binding sequences (www.illumina.com/techniques/sequencing/dna-sequencing/chip-seq.html) ... For example, analysis of DNA binding sites in the mouse brain has led to the identification of new tissue-specific regulatpry ... Analyses of histone modifications have provided insights on how the genome is organized and the functional domains across the ...
https://www.news-medical.net/life-sciences/ChIP-Sequencing-Analysis-Applications-.aspx
*  RCSB PDB: Sequence Analysis Resources
Users can perform simple and advanced searches based on annotations relating to sequence, structure and function. These ... Motif-based sequence analysis tools. *PROSITE. Detection of sequence patterns with interfaces at ExPASy (Switzerland). *Smith- ... Sequence Analysis Resources. *BLAST. Basic Local Alignment Tool with interfaces at: *DDBJ (Japan) *EMBL (Germany) *EMBNET ( ... Implementations of FASTA (Pearson and Lipman) sequence alignment method at: *DDBJ (Japan) *EBI (UK) *Georgetown University (USA ...
http://www.rcsb.org/pages/thirdparty/sequence_analysis
*  Protein sequence analysis | EMBL-EBI Train online
... processing and analysis of protein sequences and sequence-based entities such as alignments, motifs and profiles. ... This webinar focuses on how to use tools like BLAST and PSI-Search to find homologous sequences in EMBL-EBI databases, ... InterPro is a classification database that provides predictive information about protein sequences. This course will show you ...
https://www.ebi.ac.uk/training/online/topic/protein-sequence-analysis
*  Sequence analysis - Bioinformatics.Org Wiki
UGENE - a free and open source DNA and protein sequence analysis tool. The goal of the project is to integrate most of the ... readseq - Reads and writes nucleic/protein sequences in various format * SEALS - SEALS (A System for Easy Analysis of Lots of ... MPSRCH - MPSRCH™ is a suite of Smith-Waterman sequence analysis programs which run under Linux and Tru64 on Intel and Alpha. ... Toucan - A Java tool for regulatory sequence analysis: detecting over-represented motifs and modules in sets of co-regulated ...
http://www.bioinformatics.org/wiki/Sequence_analysis
*  Bioinformatics - Volume 2 Sequence Analysis
This book presents molecular biology knowledge and mathematical theories of frequently-used algorithms in sequence comparison, ...
https://www.degruyter.com/view/product/467865?format=G
*  Gaps in DNA sequence analysis
... Stephen A. Karl karl at CHUMA.CAS.USF.EDU Mon Dec 4 14:34:28 EST 1995 *Previous message: DNA ... If many gaps are needed to align a sequence then it would seem that the degree of divergence between the sequences are such ... If the sequences are easily aligned and there are 'clear' gaps necessary for the alignment then including them in the data set ... I believe that this is an important point because many people work with sequences where gap are less of a problem. People ...
http://www.bio.net/hypermail/molecular-evolution/1995-December/003871.html
*  OMIGA Sequence Analysis Software - Promotion
... Anoop Grewal agrewal at oxmol.com Mon Nov 22 20:32:20 EST 1999 *Previous message ... the best sequence analysis desktop package by reviewers from 'Science,' 'HMS Beagle' and the 'Biotechnology Software and ... OMIGA provides essential sequence analyses, superior project management, and presentation quality graphics. (See http://www.gcg ...
http://www.bio.net/bionet/mm/bio-soft/1999-November/021742.html
*  Social sequence analysis - Wikipedia
Social sequence analysis is a special application of sequence analysis, a set of methods that were originally designed in ... Brendan Halpin's sequence analysis page at the University of Limerick.. *Laurent Lesnard's Stata plugin for sequence analysis ... of sequence analysis.[40] Scholars who have made important contributions to social sequence analysis theory, techniques, data ... "social sequence analysis" to distinguish the approach from bioinformatic sequence analysis. Sociological Methods & Research ...
https://en.m.wikipedia.org/wiki/Social_sequence_analysis
*  Principles and Methods of Sequence Analysis | SpringerLink
... structure analysis. Although these methods are not, in... ... with both general principles and practical aspects of sequence ... Koonin E.V., Galperin M.Y. (2003) Principles and Methods of Sequence Analysis. In: Sequence - Evolution - Function. Springer, ... Bioinformatics: Sequence and genome analysis. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. Chapter 1.Google ... Inappropriate use of sequence analysis procedures may result in numerous errors in genome annotation (we have already touched ...
https://link.springer.com/chapter/10.1007/978-1-4757-3783-7_5
*  eBook: Targeted Sequence Analysis | The Scientist Magazine®
... designing and using gene panels for targeted analysis, and maximizing data analysis accuracy. ... Download this eBook from The Scientist and BD Biosciences to learn about the advantages of targeted single-cell analysis, ... Sequence Analysis. Learn about the advantages of targeted single-cell analysis for designing gene panels and maximizing data ... Next-generation sequencing-based single-cell whole transcriptome amplification analysis techniques can overcome this limitation ...
https://www.the-scientist.com/sponsored-ebooks/ebook-hitting-a-biological-bullseye-with-targeted-sequence-analysis-30346
*  Journal of Bioinformatics and Sequence Analysis
Choke point analysis of the metabolic pathways of Acinetobacter baylyi: A genomics approach to assess potential drug targets ... Vitis vinifera gene expression differential analysis assessing microarrays data pre-processing dynamism by RNA-Seq approach ... Evaluating the computing efficiencies (specificity and sensitivity) of graphics processing unit (GPU)-accelerated DNA sequence ... A computational technique for prediction and visualization of promoter regions in long human genomic sequences ...
https://academicjournals.org/journal/JBSA
*  Center for Biological Sequence Analysis API | ProgrammableWeb
... amino acid sequences, and small molecules. The nucleotide sequence APIs visualize and analyze genomes, as well as find specific ... The Center for Biological Sequence Analysis offers a collection of SOAP-based APIs for working with nucleotide sequences, ... The Center for Biological Sequence Analysis offers a collection of SOAP-based APIs for working with nucleotide sequences, amino ... Plant Image Analysis. The Plant Image Analysis API data can be accessed using a GET request that is constructed from a custom ...
https://www.programmableweb.com/api/center-biological-sequence-analysis?qt-right_sidebar_apiu=1
*  C-Terminal Sequence Analysis | Life Sciences | SGS
... you need to know the methodology for your analysis is selected by world-class experts. SGS C-terminal Sequencing is carried out ... As there is no standard approach to confirm the C-terminal sequence, ... Home › Life Sciences › Biopharmaceutical Services › Laboratory Services › Protein and Peptide Analysis › C-Terminal Sequence ... Life Sciences C-Terminal Sequence Analysis. The determination of C-terminal microheterogeneity is crucial to guarantee a high- ...
http://www.sgs.com/en/life-sciences/biopharmaceutical-services/laboratory-services/protein-and-peptide-analysis/c-terminal-sequence-analysis
*  Recent Advances in High Throughput Sequencing Analysis
Open Access journal that publishes research articles as well as review articles in all areas of genome-scale analysis. Topics ... Chromosome 1 Sequence Analysis of C57BL/6J-Chr1KM Mouse Strain, Fuyi Xu, Tianzhu Chao, Yiyin Zhang, Shixian Hu, Yuxun Zhou, ... Recent Advances in High Throughput Sequencing Analysis. Lead Guest Editor: Yan Guo. Guest Editors: Leng Han and Quanhu Sheng * ... Recent Advances in High Throughput Sequencing Analysis, Yan Guo, Leng Han, and Quanhu Sheng Volume 2017 (2017), Article ID ...
https://www.hindawi.com/journals/ijg/si/298612/
*  FreeScience -> Biological sequence...
The function of the models in biological sequence analysis is to summarize the information concerning what is known as a motif ... or a domain in bioinformatics, and to provide a tool for discovering instances of that motif or domain in a separate sequence ... This talk will review a little over a decade's research on applying certain stochastic models to biological sequence analysis. ... The function of the models in biological sequence analysis is to summarize the information concerning what is known as a motif ...
http://www.freescience.info/go.php?pagename=books&id=410
*  WORKSHOP ON WHOLE GENOME SEQUENCE ANALYSIS | ADBS
... organizes a 3-day Workshop on Whole Genome Sequence Analysis. The main focus of the workshop will be on variant calling and the ... SRFs and JRFs who wish to employ Whole Genome Sequencing or meta-transcriptome NGS methods in their work. ... analyses of somatic and germline mutations. De-novo Whole Genome Assembly will also be covered. ...
https://www.ncbs.res.in/adbs/workshop-whole-genome-sequence-analysis
*  Phylogenetic Analysis of Burkholderia Species by Multilocus Sequence Analysis | SpringerLink
Previous phylogenetic analyses of 16S rRNA, recA, gyrB, rpoB, and acdSgene sequences as... ... Previous phylogenetic analyses of 16S rRNA, recA, gyrB, rpoB, and acdS gene sequences as well as genome sequence comparisons of ... In this study, we undertook a multilocus sequence analysis of 77 type and reference strains of Burkholderia using atpD, gltB, ... The housekeeping gene sequences were provided from the ongoing sequencing project of B. unamae MTl-641T, B. tuberum STM678T, B ...
https://link.springer.com/article/10.1007%2Fs00284-013-0330-9
*  Social sequence analysis - Wikipedia
Social sequence analysis is a special application of sequence analysis, a set of methods that were originally designed in ... "Sequence Analysis: New Methods for Old Ideas." Annual Review of Sociology 21:93-113. Abbott, Andrew. 1995. "Sequence Analysis: ... Brendan Halpin's sequence analysis page at the University of Limerick. Laurent Lesnard's Stata plugin for sequence analysis ... of sequence analysis. Scholars who have made important contributions to social sequence analysis theory, techniques, data ...
https://en.wikipedia.org/wiki/Social_sequence_analysis
*  CSC 2417 -- Algorithms for Genome Sequence Analysis
DNA Sequencing. Shotgun sequencing * January 23rd -- Mapping Reads, Long & Short. Q-gram filtering techniques Presenter: Joe ... Analysis of Next Generation Sequencing Data. Winter 2008 Classes: W 11-1 in Bahen 025 ... De novo transcriptome sequencing Presenter: Ilya Sutskever Slides. * April 4th NOTE UNUSUAL DATE -- micro RNAs & Datastorage ... Compressed Sequence Alignment Presenter: Vlad Yanovsky * April 9th -- HCI & Other. Hawkeye Assembly Viewer Presenter: Justin Ho ...
http://www.cs.utoronto.ca/~brudno/csc2431/index.html
*  Laboratory for Genome Sequencing Analysis | RIKEN
Laboratory for Genome Sequencing Analysis. Team Leader: Hidewaki Nakagawa (M.D., Ph.D) ... "Circulating tumor DNA analysis for liver cancers and its usefulness as a liquid biopsy.". Cell Mol Gastroenterol Hepatol 1: 516 ... "A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer". Nature Genetics 46: 1103-1109 ... "Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer". Nature Communications 6: ...
http://www.riken.jp/en/research/labs/ims/genome_seq_anl/