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*  Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in Plants | lncRNA Blog
Splicing regulation by long noncoding RNAs. *Long non-coding RNAs in ischemic stroke ... short interfering RNAs (siRNAs), Piwi-interacting RNAs (piRNAs), small nucleolar RNAs (snoRNAs), and other short RNAs ... microrna micrornas miRNA Nature ncRNA NEAT1 non-coding rna non-coding rnas noncoding RNA post-doc Prognosis Prostate Cancer RNA ... HOTAIR junk dna lincrna lincRNAs lncrna lncrnas long non-coding RNA long non-coding RNAs long noncoding rna Long Noncoding RNAs ...
http://www.lncrnablog.com/transposable-elements-tes-contribute-to-stress-related-long-intergenic-noncoding-rnas-in-plants/
*  Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes | Genome Biology | Full Text
This indicates that rather than the opportunistic use of incidental splice sites by the splicing machinery, the presence and ... Rna. 2009, 15: 2013-2027. 10.1261/rna.1705309.PubMedPubMed CentralView ArticleGoogle Scholar. ... Rna. 16: 324-337. 10.1261/rna.1441510.Google Scholar. *. Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA, Shoukry M ... sequence conservation across all examined vertebrates within a subset of donor and acceptor splice sites. Consensus splice-site ...
https://genomebiology.biomedcentral.com/articles/10.1186/gb-2010-11-7-r72
*  AT1G20320 protein (Arabidopsis thaliana) - STRING network view
DNA-directed RNA polymerase II subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the ... splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a ... DNA-directed RNA polymerase II subunit RPB3-A; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using ... DNA-directed RNA polymerase II subunit RPB3-B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using ...
https://string-db.org/cgi/network.pl?identifier=3702.AT1G20320.1
*  MED8 - Mediator of RNA polymerase II transcription subunit 8 - Homo sapiens (Human) - MED8 gene & protein
Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II ... a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. ... interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA ... Alternative splicing. ,p>This section provides links to proteins that are similar to the protein sequence(s) described in this ...
http://www.uniprot.org/uniprot/Q96G25
*  Lecture8 - 25 26 The hammerhead ribozyme(plant virus Martick& Scott Cell 2006 27 Group I intron ribozyme Golden et al and cech...
4 RNA structure and catalysis: RNA vs. DNA RNA as an information molecule RNA secondary structure RNA tertiary structure RNA as ... tions remain to be investigated especially with regard to the three splicing ... RNA vs. DNA RNA as an information molecule RNA secondary structure RNA tertiary structure RNA as a catalyst RNA world 35 Have ... polymerization RNA ligases RNA capping RNA phosphorylation RNA cleavage Peptide bond formation Amide bond formation 32 33 RNA ...
https://www.coursehero.com/file/6078869/Lecture8/
*  Long non-coding RNA - Wikipedia
Munroe SH, Lazar MA (25 November 1991). "Inhibition of c-erbA mRNA splicing by a naturally occurring antisense RNA". The ... short interfering RNAs (siRNAs), Piwi-interacting RNAs (piRNAs), small nucleolar RNAs (snoRNAs), and other short RNAs. However ... an ncRNA repressor of RNA polymerase II transcription". RNA. 13 (4): 583-96. doi:10.1261/rna.310307. PMC 1831867 . PMID ... June 2007). "RNA maps reveal new RNA classes and a possible function for pervasive transcription". Science. 316 (5830): 1484-8 ...
https://en.wikipedia.org/wiki/Long_non-coding_RNA
*  DNA-directed RNA polymerase I subunit RPA12
Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013] ... Component of RNA polymerase I which synthesizes ribosomal RNA precursors. This gene encodes a DNA-directed RNA polymerase I ... DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as ... Expression quantitative trait loci in long non-coding RNA ZNRD1-AS1 influence both HBV infection and hepatocellular carcinoma ...
https://pharos.nih.gov/idg/targets/Q9P1U0
*  Genome-wide interrogation reveals hundreds of long intergenic noncoding RNAs that associate with cardiometabolic traits |...
Researchers use CRISPR to show that the short splicing isoform of Xist RNA is sufficient to induce X-chromosome inactivation. ... short interfering RNAs (siRNAs), Piwi-interacting RNAs (piRNAs), small nucleolar RNAs (snoRNAs), and other short RNAs ... RNAs MALAT1 metastasis microarray microrna micrornas miRNA Nature ncRNA NEAT1 non-coding rna non-coding rnas noncoding RNA post ... Medical University HOTAIR junk dna lincrna lincRNAs lncrna lncrnas long non-coding RNA long non-coding RNAs long noncoding rna ...
http://www.lncrnablog.com/genome-wide-interrogation-reveals-hundreds-of-long-intergenic-noncoding-rnas-that-associate-with-cardiometabolic-traits/
*  AT1G31300 protein (Arabidopsis thaliana) - STRING network view
RNA polymerase II large subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ... splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a ... RNA polymerase II large subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ... Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. ...
https://string-db.org/cgi/network.pl?identifier=3702.AT1G31300.1
*  Antisense RNA - Wikipedia
With the asRNA of ZEB2 being expressed, it can mask the splicing site and maintain the IRES in the mRNA which results in an ... RNA I and RNA II forms a duplex which introduces a conformational change of RNA II. Consequently, RNA II cannot hybridize with ... RNA-RNA interactions either in nucleus or cytoplasm and RNA-protein interactions (epigenetic). Antisense RNAs can be ... The replication of ColE1 relies on the transcription of a primer RNA named RNA II. Once RNA II is transcribed, it hybridizes to ...
https://en.wikipedia.org/wiki/Antisense_RNA
*  RNA splicing - Wikipedia
Splicing pathways[edit]. Several methods of RNA splicing occur in nature; the type of splicing depends on the structure of the ... RNA splicing, in molecular biology, is a form of RNA processing in which a newly made precursor messenger RNA (pre-mRNA) ... Protein splicing[edit]. Main article: Protein splicing. In addition to RNA, proteins can undergo splicing. Although the ... Eukaryotes splice many protein-coding messenger RNAs and some non-coding RNAs. Prokaryotes, on the other hand, splice rarely ...
https://en.wikipedia.org/wiki/Splicing_
*  RNA Splicing Software
... Jose Gonzales josegonz at imnr.com Wed Feb 12 12:30:09 EST 1997 *Previous message: beads for cell ... Hello all! Has anyone heard of any RNA splicing prediction software for PC or Mac? Thanks Jose E. N. Gonzales The Immune ...
http://www.bio.net/bionet/mm/methods/1997-February/054661.html
*  Discovery of RNA splicing and genes in pieces | PNAS
Discovery of RNA splicing and genes in pieces. Arnold J. Berk. PNAS January 26, 2016 113 (4) 801-805; published ahead of print ... through the viral sequences that are spliced together, strongly supporting the model of mRNA processing by RNA splicing of a ... 1978) Spliced segments at the 5′ termini of adenovirus-2 late mRNA: A role for heterogeneous nuclear RNA in mammalian cells. ... Consequently, RNA splicing appears to have had a profound effect on the expansion of the proteome in higher organisms and the ...
http://www.pnas.org/content/113/4/801.full
*  RNA splicing - Simple English Wikipedia, the free encyclopedia
Eukaryotes splice many protein-coding messenger RNAs and some non-coding RNAs. Prokaryotes, on the other hand, splice rarely. ... RNA splicing is a stage in gene transcription. Messenger RNA (mRNA), which transfers the code from DNA to proteins, is built in ... Alternative splicing[change , change source]. Main article: Alternative splicing. In many cases, the splicing process creates a ... Berget S.M; Moore C. and Sharp P.A. (1977). "Spliced segments at 5' terminus of adenovirus 2 late messenger-RNA". Proc. Natl. ...
https://simple.wikipedia.org/wiki/RNA_splicing
*  Sandwalk: RNA Splicing: Introns and Exons
These RNAs are called small nuclear RNAs (snRNAs) and they're one example of a host of small RNAs produced by non-protein ... In the first step of the splicing reaction, the various components of the spliceosome bind to the 5′ splice site, the 3′ splice ... rnasplicing-geneexpression.blogspot.com/2009/12/gene-expression-and-rna-splicing.html ... For protein-encoding genes the splicing reactions are catalyzed by an RNA/protein complex called a spliceosome. In some cases, ...
http://sandwalk.blogspot.com/2007/06/rna-splicing-introns-and-exons.html
*  Biomolecules | Free Full-Text | The RNA Splicing Response to DNA Damage
... has expanded considerably in recent years to include splicing and alternative splicing factors. While the binding of splicing ... A better understanding of how changes in splice site selection are integrated into the DDR may provide new avenues to combat ... The first steps of the DDR promote the post-translational modification of splicing factors to affect their localization and ... an emerging trend is that DNA damage disrupts the coupling of constitutive and alternative splicing with the transcription of ...
http://www.mdpi.com/2218-273X/5/4/2935
*  Alternative RNA Splicing Therapy for Spinal Muscular Atrophy :: DNA Learning Center
3D Animation of RNA Splicing. An animation of the crucial RNA editing step called splicing.. SOURCE: DNALC.SMA. ... RNA Splicing. A step-by-step 2D animation shows the details of RNA splicing.. SOURCE: DNALC.SMA. ... The Connection Between SMA and RNA Splicing. Dr. Krainer explains the connection between SMA and RNA splicing.. SOURCE: DNALC. ... Alternative RNA Splicing. Drs. Sharp and Krainer explain how genes can be alternatively spliced.. SOURCE: DNALC.SMA. ...
https://www.dnalc.org/view/16948-Alternative-RNA-Splicing-Therapy-for-Spinal-Muscular-Atrophy.html
*  Biology | Free Full-Text | RNA Splicing Factors and RNA-Directed DNA Methylation
Recently, splicing factors are reported to be involved in both RNAi-directed heterochromatin formation in yeast and the RdDM ... In yeast, splicing factors may provide a platform for facilitating the siRNA generation through an interaction with RDRC and ... while the establishment of DNA methylation in plants is through the RNA-directed DNA methylation (RdDM) pathway. ... RNA-directed histone and/or DNA modification is a conserved mechanism for the establishment of epigenetic marks from yeasts and ...
http://mdpi.com/2079-7737/3/2/243/xml
*  RNA splicing | definition of RNA splicing by Medical dictionary
RNA splicing explanation free. What is RNA splicing? Meaning of RNA splicing medical term. What does RNA splicing mean? ... Looking for online definition of RNA splicing in the Medical Dictionary? ... Related to RNA splicing: alternative RNA splicing, Alternative splicing. splic·ing. (splīs'ing), 1. Attachment of one DNA ... RNA splicing , definition of RNA splicing by Medical dictionary https://medical-dictionary.thefreedictionary.com/RNA+splicing ...
https://medical-dictionary.thefreedictionary.com/RNA+splicing
*  RNA splicing - Wikipedia
Trans-splicing is a form of splicing that joins two exons that are not within the same RNA transcript. Self-splicing occurs for ... Several methods of RNA splicing occur in nature; the type of splicing depends on the structure of the spliced intron and the ... Eukaryotes splice many protein-coding messenger RNAs and some non-coding RNAs. Prokaryotes, on the other hand, splice rarely ... RNA. 15 (12): 2385-97. doi:10.1261/rna.1821809. PMC 2779669 . PMID 19861426. Shkreta L, Chabot B (2015). "The RNA Splicing ...
https://en.wikipedia.org/wiki/RNA_splicing
*  rtcB - RNA-splicing ligase RtcB - Escherichia coli (strain K12) - rtcB gene & protein
Also acts as a DNA ligase in case of DNA damage by splicing 'dirty' DNA breaks, characterized by 3'-PO4 (or cyclic-PO4) and 5'- ... OH ends to form a splice junction with a 2'-OH, 3',5'-phosphodiester, a step that requires GTP (PubMed:21224389, PubMed: ... RNA ligase that mediates the joining of broken tRNA-like stem-loop structures in case of tRNA damage. Probably participates to ... "RtcB, a novel RNA ligase, can catalyze tRNA splicing and HAC1 mRNA splicing in vivo.". Tanaka N., Meineke B., Shuman S.. J. ...
https://www.uniprot.org/uniprot/P46850
*  ExonHit, UMBI announce RNA splicing...( ROCKVILLE Md.--ExonHit Therapeutics t...)
Je... As a pioneer in the analysis of alternative splicing and its appl...,ExonHit,,UMBI,announce,RNA,splicing,symposium, ... Adrian Krainer Cold Spring Harbor La... Splicing 2002 will focus on state-of-the-art concepts and mechanisms...The luncheon ... speaker at Splicing 2002 will be UMBI President Dr. ... ExonHit Therapeutics the alternative splicing-based d...The ... "Splicing 2002" will focus on state-of-the-art concepts and mechanisms of alternative RNA splicing, with leading scientists ...
http://news.bio-medicine.org/biology-news-2/ExonHit--UMBI-announce-RNA-splicing-symposium-6751-1/
*  MAPPFinder using GO and GenMAPP to study gene expression | Rna Splicing | Metabolism
RNA capping + RNA modification 0/0 0%, 0/0 0% NESTED 2/3 66.7%, 3/3 100% z score = 1.83 - RNA splicing 0/0 0%, 0/0 0% NESTED 19 ... clearly shows that mRNA splicing is a child term of both RNA splicing and mRNA processing, which are in turn child terms of RNA ... splice site cleavage, exon ligation lariat formation, 5'-splice site cleavage MATa1 (A1) pre-mRNA splicing mRNA splice site ... For example, the terms 'RNA metabolism', 'RNA processing', 'mRNA processing', and 'mRNA splicing' appear as upregulated in ...
https://www.scribd.com/document/2511329/MAPPFinder-using-GO-and-GenMAPP-to-study-gene-expression
*  Difference between revisions of "Wikiomics:RNA splicing" - OpenWetWare
ASAP II splicing DB of several species from 2006.. * ProSplicer An Alternative Splicing Database based on Protein, mRNA, and ... Based on splicing graphs (1.2 milions transcripts) * Alternative Splicing and Transcript Diversity @EBI human, mouse and rat ... GENESEQER web server several organisms and splice models. allows generic splice, user provided genomic sequence & ESTs ... Alternative splice forms databases:. Recommended: * ENSEMBL not the most extensive but first choice for typical, already ...
https://openwetware.org/wiki/?title=Wikiomics:RNA_splicing&diff=225650&oldid=215046
*  Multitasking Rett Protein Shines Spotlight on RNA Splicing in Neurologic and Psychiatric Disease | ALZFORUM
While RNA splicing abnormalities are not root causes of these diseases, splicing shows up in various guises in all of them. In ... Regulation of RNA splicing by the methylation-dependent transcriptional repressor methyl-CpG binding protein 2. Proc Natl Acad ... At the basic level, interest in how proteins interact with RNA to orchestrate the splicing of pre-mRNA is being fanned by the ... It raises the question whether Rett syndrome is as much a disorder of RNA splicing as of DNA expression. Given that different ...
http://www.alzforum.org/news/research-news/multitasking-rett-protein-shines-spotlight-rna-splicing-neurologic-and