5S ribosomal RNA - Wikipedia
The 5S ribosomal RNA (5S rRNA) is an approximately 120 nucleotide-long ribosomal RNA molecule with a mass of 40 kDa. It is a ... Page for 5S ribosomal RNA at Rfam 5SData Archived 2010-04-27 at the Wayback Machine 5S+Ribosomal+RNA at the U.S. National ... Binding between 5S rRNA and TFIIIA serves to both repress further transcription of the 5S RNA gene and stabilize the 5S RNA ... Pelham HR, Brown DD (July 1980). "A specific transcription factor that can bind either the 5S RNA gene or 5S RNA". Proceedings ...
Characterization of Thinopyrum distichum chromosomes using double fluorescence in situ hybridization, RFLP analysis of 5S and...
Simultaneous fluorescence in situ hybridization showed both 5S and 18S-5.8S-26S ribosomal RNA genes to be located on chromosome ... Thinopyrum distichum chromosome VII carried only a 18S-5.8S-26S rRNA locus and chromosome pair II carried only a 5S rRNA locus ... Also, TaqI and BamHI restriction fragments containing 5S and 18S-5.8S-26S rRNA sequences were identified as positive markers ... distichum chromosome pairs also carried 5S rRNA loci. The homoeologous relationship between Th. distichum chromosomes IV and ...
WikiGenes - Rn5s - 5S RNA
Oligonucleotide sequences of pancreatic and T1 ribonuclease digests of 5S ribosomal RNA from mouse cells. Takai, K., Hashimoto ... Scaffold RNA represented three fractions: a major RNA fraction with an electrophoretic mobility corresponding to that of 5S RNA ... and kappa-chain RNA, total RNA, 5S RNA, and tRNA in mouse myeloma cells (MPC-11) was inhibited by gamma-irradiation [2]. ... However, when 5S ribosomal RNA was extracted from ribosomes which were prepared from microsomal pellet, pancreatic RNase digest ...
PRIME PubMed | [The Thermus thermophilus 5S rRNA-protein complex: Identifications of specific binding sites for proteins L5 and...
Identifications of specific binding sites for proteins L5 and L18 in 5S rRNA]. Download Prime PubMed App to iPhone, iPad, or ... Binding SitesProtein BindingRNA, BacterialRNA, Ribosomal, 5SRibosomal ProteinsThermus thermophilus ... Detailed analysis of RNA-protein interactions within the bacterial ribosomal protein L5/5S rRNA complex. ... Ribosomal proteins, TL4 and TL5, from Thermus thermophilus form hybrid complexes with 5 S ribosomal RNA from different ...
A 5S rRNA/L5 complex is a precursor to ribosome assembly in mammalian cells
The RNP is small (approximately 7S) and contains most of the nonribosome-associated 5S RNA molecules in HeLa cells. The 5S RNA ... A novel 5S RNA-protein (RNP) complex in human and mouse cells has been analyzed using patient autoantibodies. ... The protein moiety of the 5S RNP has been identified as ribosomal protein L5, which is known to be released from ribosomes in a ... The RNP is small (approximately 7S) and contains most of the nonribosome-associated 5S RNA molecules in HeLa cells. The 5S RNA ...
Cutibacterium acnes KPA171202 5S ribosomal RNA | URS000012D507
This rRNA sequence is 122 nucleotides long and is found in Cutibacterium acnes KPA171202. Annotated by 2 databases (ENA, RefSeq). Has a conserved secondary structure or a structured region. Matches 1 Rfam family (5S_rRNA, RF00001).
RNA 47 RNA 47 5S ribosomal RNA (RefSeq) | Syntrophy Portal
Gene: 5S rRNA (ENSRNA022761310) - Summary - Octopus bimaculoides - Ensembl Genomes 57
RNA 37 RNA 37 5S ribosomal RNA (RefSeq) | Syntrophy Portal
Molecular organization and polymorphism of 5S rDNA in carpathian bees
Simon, L., Rabanal, F.A., et al., Genetic and epigenetic variation in 5S ribosomal RNA genes reveals genome dynamics in ... Morton, D.G. and Sprague, K.U., In vitro transcription of a silkworm 5S RNA gene requires an upstream signal, Proc. Natl. Acad ... Nelson, D.W., Linning, R.M., et al., 5-Flanking sequences required for efficient transcription in vitro of 5S RNA genes, in ... Cherevatov, O.V. and Volkov, R.A., Organization of 5S ribosomal DNA of Melitaea trivia, Cytol. Genet., 2011b, vol. 45, no. 2, ...
Homo sapiens
5S Ribosomal RNA; EXT_SOURCE=Gutell Lab CRW Site; EXT_ID=d.5.a.M.jannaschii.rrnA; ORGANISM=Methanocaldococcus jannaschii ... 5S Ribosomal RNA; EXT_SOURCE=Gutell Lab CRW Site; EXT_ID=d.5.e.H.sapiens.1; ORGANISM=Homo sapiens ... 5S Ribosomal RNA; EXT_SOURCE=Gutell Lab CRW Site; EXT_ID=d.5.e.O.sativa.1; ORGANISM=Oryza sativa ... 5S Ribosomal RNA; EXT_SOURCE=Gutell Lab CRW Site; EXT_ID=d.5.e.O.sativa.2; ORGANISM=Oryza sativa ...
Novel Cryptosporidium Genotypes in Sporadic Cryptosporidiosis Cases: First Report of Human Infections with a Cervine Genotype -...
Ribosomal RNA gene organization in Cryptosporidium parvum. Mol Biochem Parasitol. 1997;90:463-78. DOIPubMedGoogle Scholar ... 1999;46:44S-5S.PubMedGoogle Scholar. *. Pedraza-Díaz S, Amar C, McLauchlin J. The identification and characterisation of an ... which have been differentiated by sequence polymorphisms in the small subunit ribosomal RNA (13-15), the acetyl CoA synthetase ...
Ribosomal RNA genes (rDNA)
Genes of the ribosomal 5S RNA. The probe for 5S rDNA showed hybridization signals in the cHC of the NO-Chromosomes I and K. On ... Ribosomal RNA genes (rDNA). Ribosomal 18S-25S RNA Genes. Localization. The hybridization signals of the probe for the 18S-25S ... The second 5S rDNA locus was found on chromosome K at about the middle of the cHC of the long arm, the position of the weak ... The co-localization with the 18S-25S and the 5S rDNA probe confirm that the loci of both rDNA types are found on chromosomes I ...
14990 - 14990 | ATCC
GenBank L37605 Staphylococcus epidermidis 16S ribosomal RNA (16S rRNA) gene.. GenBank U02913 Staphylococcus epidermidis ATCC ... GenBank K02688 S.epidermidis 5S rRNA.. GenBank Z48233 S.epidermidis thyF and dfrC genes. ...
Ectothiorhodospira shaposhnikovii (Imhoff et al.) Ventura et al. - 43036 | ATCC
Genes | Free Full-Text | Impacts of the Type I Toxin-Antitoxin System, SprG1/SprF1, on Staphylococcus aureus Gene Expression
... acting as labile antisense RNAs. The Staphylococcus aureus (S. aureus) genome contains and expresses several functional type I ... The 5S ribosomal RNA was used as the loading control. mRNA levels of the SprG1 toxin and differentially expressed proteins were ... Moreover, the SprF1 RNA level is decreased at the stationary growth phase, contrary to the SprG1 RNA level that is increased ( ... In Vitro Transcription, RNA Labeling, and Electrophoretic Mobility Shift Assays (EMSA) Assays. SprF1 RNA and ppiB117 mRNA were ...
Nucleolar RNA polymerase II drives ribosome biogenesis | Nature
RNA polymerase II has an unexpected function in the nucleolus, helping to drive the expression of ribosomal RNA and to protect ... are the only enzymes that directly mediate the expression of the ribosomal RNA (rRNA) components of ribosomes. Here we show, ... Our findings revise theories of labour division between the major RNA polymerases, and identify nucleolar Pol II as a major ... The shield prevents Pol I from producing sense intergenic noncoding RNAs (sincRNAs) that can disrupt nucleolar organization and ...
NEBNext® rRNA Depletion Kit (Bacteria) | NEB
Figure 2: Depletion of ribosomal RNA with NEBNext enriches for RNAs of interest across monoculture species. Total RNA (100 ng) ... The NEBNext® rRNA Depletion Kit (Bacteria) employs the NEBNext RNase H-based RNA depletion workflow to deplete rRNA (5S, 16S, ... The great majority of RNA in bacteria is ribosomal RNA (rRNA). This highly abundant RNA can conceal the biological significance ... Figure 3: NEBNext demonstrates consistent depletion of ribosomal RNA across a range of input amounts. E.coli total RNA (1 µg, ...
RNA5SP132 | 遺伝子情報 | J-GLOBAL 科学技術総合リンクセンター
SCOPe 2.08: Structural Classification of Proteins - extended
Description: nmr solution structure of the 5s rRNA e-loop/l25 complex. Class: ribosome. Keywords: protein-RNA complex, ribosome ... Compound: ribosomal protein l25. Species: Escherichia coli [TaxId:562]. Database cross-references and differences (RAF-indexed ... Compound: 5s rRNA e-loop (5se). Species: synthetic, synthetic. PDB Chain Sequences:. *Chain A:. Sequence; same for both ...
Genome sequencing and analysis of Aspergillus oryzae | Nature
Hori, H. & Osawa, S. Origin and evolution of organisms as deduced from 5S ribosomal RNA sequences. Mol. Biol. Evol. 4, 445-472 ... Transfer RNAs were identified using tRNAScan-SE25. Repeated sequences were detected using RepeatMasker (Smit, A. F. A. and ... Lowe, T. M. & Eddy, S. R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic ... rich sequences or transfer RNA often mediate such rearrangements20. Our EST analysis shows that the expression profile in solid ...
RNA5SP323 | Gene Information | J-GLOBAL
SCR 1q41-1q43 Genes
RNA, 5S ribosomal 10. RN5S11. 100169762. 1q42. 228768376. 228768496. 120. PROVISIONAL. RNA, 5S ribosomal 11. ... RNA, Ro-associated Y4 pseudogene 16. RPL23AP15. 391175. 1q42.13. 228636869. 228637322. 453. INFERRED. ribosomal protein L23a ... transfer RNA leucine 45 (anticodon UAA) pseudogene. TRNAP23P. 100189463. 1q43. 238105862. 238105933. 71. INFERRED. transfer RNA ... ribosomal protein L23a pseudogene 23. RPL34P7. 100127995. 1q42.12. 226376569. 226376922. 353. INFERRED. ribosomal protein L34 ...
Frederick Sanger - Wikipédia, a enciclopédia livre
Brownlee, G.G.; Sanger, F.; Barrell, B.G. (1967), «Nucleotide sequence of 5S-ribosomal RNA from Escherichia coli», Nature, 215 ... Brownlee, G.G.; Sanger, F.; Barrell, B.G. (1968), «The sequence of 5S ribosomal ribonucleic acid», Journal of Molecular Biology ... Brownlee, G.G.; Sanger, F. (1967), «Nucleotide sequences from the low molecular weight ribosomal RNA of Escherichia coli», ... Marcker, K.; Sanger, F. (1964), «N-formyl-methionyl-S-RNA», Journal of Molecular Biology, 8 (6): 835-840, PMID 14187409, doi: ...
Sandwalk: Theme: Genomes & Junk DNA
Human Ribosomal RNA Genes. Total ribosomal RNA genes in the genome:. 5S: 100 copies of 2.2 kb repeats = 220 kb. (estimate 100 ... Ribosomal RNA Genes in Eukaryotes. The "genes" for ribosomal RNAs in eukaryotic genomes are found in separate clusters. One ... The other ribosomal RNA genes are found in an "operon"-like structure thats similar to the bacerial operons [Ribosomal RNA ... Junk RNA or Imaginary RNA?. RNA is very popular these days. It seems as though new varieties of RNA are being discovered just ...
International Journal of Biology
The 5S ribosomal RNA gene(s) and their associated intergenic spacer regions were amplified from Carica papaya and Carica ... Cloning and Sequence Analysis of 5S Ribosomal RNA Gene(s) and Associated Intergenic Spacer Regions in Carica Species. *Article ... Sequence variation was observed in various 5S rRNA gene copies cloned from Carica quercifolia. Only truncated 5S rRNA gene but ... The role of 5S rRNA gene and their spacer regions in discerning the germplasm and in adaptation of the species is discussed. ...
Ribosomal protein L25 - Proteopedia, life in 3D
Ribosomal protein L25 with 5S RNA fragment and Mg+2 ions, (PDB code 1dfu) ... Ribosomal protein L25 (RPL25) or general stress protein Ctc is one of the 34 proteins which belong to the large 50S subunit of ... The NMR structure of Escherichia coli ribosomal protein L25 shows homology to general stress proteins and glutaminyl-tRNA ...
SciELO - Brazil - First cytogenetic characterization of the sub-arctic marine fish Mallotus villosus (Müller, 1776),...
Hatanaka T and Galetti PM (2004) Mapping of the 18S and 5S ribosomal RNA genes in the fish Prochilodus argenteus Agassiz, 1829 ... Martins C, Wasko AP, Oliveira C and Wright JM (2000) Nucleotide sequence of 5S rDNA and localization of the ribosomal RNA genes ... The present ribosomal gene mapping for the osmerid capelin indicated that both the major and the 5S ribosomal genes are ... The DNA fragment used as a probe for detecting the 5S ribosomal genes is a 120 bp sequence corresponding to the 5S coding ...
Frontiers | Comparative Genome Analysis Provides Insights into Both the Lifestyle of Acidithiobacillus ferrivorans Strain CF27...
... an additional ribosomal RNA (rrn) operon was found, leading to two rRNA operons organized in the order 16S-23S-5S, as in other ... RNA Manipulations. Total RNA from planktonic cells was prepared by using acid-phenol extraction (Aiba et al., 1981) modified ... A) Taxonomic affiliation of ribosomal proteins (colored boxes). The color indicates the closest affiliation of ribosomal ... Total RNA from sulfur-attached cells was prepared according to (Mamani et al., 2016). The RNA integrity was assessed by agarose ...