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*  RCSB PDB - Protein Feature View - Ribosomal RNA small subunit methyltransferase F - B7USL2 (RSMF ECO27)
The PDB archive contains information about experimentally-determined structures of proteins, nucleic acids, and complex assemblies. As a member of the wwPDB, the RCSB PDB curates and annotates PDB data according to agreed upon standards. The RCSB PDB also provides a variety of tools and resources. Users can perform simple and advanced searches based on annotations relating to sequence, structure and function. These molecules are visualized, downloaded, and analyzed by users who range from students to specialized scientists.
http://www.rcsb.org/pdb/protein/B7USL2
*  RCSB PDB - 1VQ9: The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of...
The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui ... RNA LINKING. C9 H13 N2 O9 P. U. ... RNA LINKING. C10 H15 N2 O9 P. U. ... 50S ribosomal protein L2P. A. 240. Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809). Mutation(s): ... 50S ribosomal protein L3P. B. 338. Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809). Mutation(s): ...
https://www.rcsb.org/structure/1vq9
*  RCSB PDB - 4K0K: Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA...
Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop ... allows efficient recognition and read-through of these stop codons by a transfer RNA (tRNA), although it requires the formation ... Here we determined the crystal structure at 3.1 Å resolution of the 30S ribosomal subunit in complex with the anticodon stem ... Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop ...
https://www.rcsb.org/structure/4K0K
*  RCSB PDB - 4DR2: Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with multiple copies of paromomycin...
30S ribosomal subunit with multiple copies of paromomycin molecules bound ... Our crystal structures display a significant local distortion of 16S ribosomal RNA induced by streptomycin, including the ... selects aminoacyl-transfer RNAs with anticodons matching the messenger RNA codon present in the A site of the small ribosomal ... selects aminoacyl-transfer RNAs with anticodons matching the messenger RNA codon present in the A site of the small ribosomal ...
https://www.rcsb.org/structure/4DR2
*  RCSB PDB - 1MJI: DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA...
Detailed analysis of RNA-protein interactions within the bacterial ribosomal protein L5/5S rRNA complex ... DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX. ...
http://www.rcsb.org/pdb/explore/materialsAndMethods.do?structureId=1MJI
*  Structure Cluster - 3J2H: Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM 3D...
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM and general features of the assembly ... Description: 16S rRNA rna , Length: 1533 This entity is NOT a polypeptide entity and therefore cannot be considered for the all ... Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM. ...
http://www.rcsb.org/pdb/explore/structureCluster.do?structureId=3J2H
*  RCSB PDB - 1JGO: The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA...
The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA ... 30S RIBOSOMAL PROTEIN S2. E. 256. Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579). Mutation(s): 0 Gene Names: rpsB ( ... 30S RIBOSOMAL PROTEIN S3. F. 239. Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579). Mutation(s): 0 Gene Names: rpsD ( ... 30S RIBOSOMAL PROTEIN S4. G. 209. Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579). Mutation(s): 0 Gene Names: rpsD ( ...
https://www.rcsb.org/structure/1jgo
*  Structure Cluster - 4AQY: Structure of ribosome-apramycin complexes 3D Similarity Report Page
Description: 16S RIBOSOMAL RNA rna , Length: 1522 This entity is NOT a polypeptide entity and therefore cannot be considered ... Description: 30S RIBOSOMAL PROTEIN S14 protein , Length: 60 No structure alignment results are available for 4AQY.N explicitly. ... Description: 30S RIBOSOMAL PROTEIN S15 protein , Length: 88 No structure alignment results are available for 4AQY.O explicitly. ... Description: 30S RIBOSOMAL PROTEIN S16 protein , Length: 88 No structure alignment results are available for 4AQY.P explicitly. ...
http://www.rcsb.org/pdb/explore/structureCluster.do?structureId=4AQY&bionumber=1
*  Structure Cluster - 1HNX: STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN 3D...
... and hygromycin B on the 30S ribosomal subunit. ... Description: 16S RIBOSOMAL RNA rna , Length: 1522 This entity ... Description: FRAGMENT OF MESSENGER RNA rna , Length: 6 This entity is NOT a polypeptide entity and therefore cannot be ... Description: 30S RIBOSOMAL PROTEIN S9 protein , Length: 128 No structure alignment results are available for 1HNX.I explicitly. ... Description: 30S RIBOSOMAL PROTEIN S14 protein , Length: 61 No structure alignment results are available for 1HNX.N explicitly. ...
http://www.rcsb.org/pdb/explore/structureCluster.do?structureId=1HNX
*  RCSB PDB - Protein Feature View - 30S ribosomal protein S20 - P21477 (RS20 BACSU)
The PDB archive contains information about experimentally-determined structures of proteins, nucleic acids, and complex assemblies. As a member of the wwPDB, the RCSB PDB curates and annotates PDB data according to agreed upon standards. The RCSB PDB also provides a variety of tools and resources. Users can perform simple and advanced searches based on annotations relating to sequence, structure and function. These molecules are visualized, downloaded, and analyzed by users who range from students to specialized scientists.
http://www.rcsb.org/pdb/protein/P21477
*  RCSB PDB - 1P91: Crystal Structure of RlmA(I) enzyme: 23S rRNA n1-G745 methyltransferase (NORTHEAST STRUCTURAL GENOMICS...
Ribosomal RNA large subunit methyltransferase A. A, B. 269. Escherichia coli (strain K12). Mutation(s): 0 Gene Names: rlmA ( ... The unique shape of the RNA-binding cleft, different from that of known RNA-binding proteins, is highly specific and ... The asymmetric RlmA(I) dimer observed in the crystal structure has a well defined W-shaped RNA-binding cleft. Two S-adenosyl-l- ... providing 3D structure information for the RlmA class of RNA methyltransferases. The dimeric protein structure exhibits ...
https://www.rcsb.org/structure/1P91
*  RCSB PDB - Protein Feature View - Interferon-activable protein 204 - P15092 (IFI4 MOUSE)
Inhibits the transcription of ribosomal RNA. May inhibit DNA binding by UBTF. Inhibits cell growth via p53/TP53 and RB1- ...
http://www.rcsb.org/pdb/protein/P15092
*  Sequence Similarity - 4II9: Crystal structure of Weissella viridescens FemXVv non-ribosomal amino acid transferase in...
The Structure of FemXWv in Complex with a Peptidyl-RNA Conjugate: Mechanism of Aminoacyl Transfer from Ala-tRNA(Ala) to ... Crystal structure of Weissella viridescens FemXVv non-ribosomal amino acid transferase in complex with a peptidyl-RNA conjugate ... RNA (5'-R(P*CP*CP*(A9Z))-3') rna, length: 3 (BLAST) ...
http://www.rcsb.org/pdb/explore/sequenceCluster.do?structureId=4II9
*  Remediated Sequence - 4II9: Crystal structure of Weissella viridescens FemXVv non-ribosomal amino acid transferase in...
The Structure of FemXWv in Complex with a Peptidyl-RNA Conjugate: Mechanism of Aminoacyl Transfer from Ala-tRNA(Ala) to ... Crystal structure of Weissella viridescens FemXVv non-ribosomal amino acid transferase in complex with a peptidyl-RNA conjugate ...
http://www.rcsb.org/pdb/explore/remediatedSequence.do?structureId=4II9¶ms.chainViewStrategyStr=proteinOnly
*  Sequence Similarity - 1EMI: STRUCTURE OF 16S RRNA IN THE REGION AROUND RIBOSOMAL PROTEIN S8. Sequence Similarity...
16S RIBOSOMAL RNA rna, length: 161 (BLAST) Sequence Similarity Cutoff. Rank. Chains in Cluster. Cluster ID / Name. ... RIBOSOMAL PROTEIN S8 protein, length: 136 (BLAST) Sequence Similarity Cutoff. Rank. Chains in Cluster. Cluster ID / Name. ...
http://www.rcsb.org/pdb/explore/sequenceCluster.do?structureId=1EMI
*  RCSB PDB - 4NXN: Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound...
Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin ... RNA LINKING. C9 H13 N2 O9 P. U. ... RNA LINKING. C10 H16 N3 O8 P. C. ... ribosomal protein S2. B. 256. Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579). Mutation(s): 0 Gene Names: rpsB (rps2) ... ribosomal protein S3. C. 239. Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579). Mutation(s): 0 Gene Names: rpsC (rps3) ...
https://www.rcsb.org/structure/4nxn
*  RCSB PDB - Protein Feature View - 30S ribosomal protein S19 - Q5SHP2 (RS19 THET8)
Contacts several RNA helices of the 16S rRNA. UniProt Pathway Maps Maps: ... Part of the 30S ribosomal subunit. Forms a loose dimer with protein S13. UniProt ...
http://www.rcsb.org/pdb/protein/Q5SHP2
*  RCSB PDB - 2IL9: Crystal Structure of Plautia Stali Intestine Virus Intergenic Region Internal Ribosome Entry Site Ribosomal...
Crystal Structure of Plautia Stali Intestine Virus Intergenic Region Internal Ribosome Entry Site Ribosomal Binding Domain RNA ... In contrast, internal ribosomal entry sites (IRESs) are cis-acting RNAs that in some cases completely supplant these fa ... ... In contrast, internal ribosomal entry sites (IRESs) are cis-acting RNAs that in some cases completely supplant these factors by ... Ribosomal Binding Domain of the IRES RNA. A,M. 142. N/A. ... Internal Ribosome Entry Site Ribosomal Binding Domain RNA at ...
https://www.rcsb.org/structure/2IL9
*  RCSB PDB - 4D5Y: Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus...
Cryo-Em Structures of Ribosomal 80S Complexes with Termination Factors and Cricket Paralysis Virus Ires Reveal the Ires in the ... 28S Ribosomal RNA 2. 5025 Oryctolagus cuniculus 5.8S Ribosomal RNA 3. 194 Oryctolagus cuniculus ... 60S RIBOSOMAL PROTEIN UL2 A 257 Oryctolagus cuniculus Gene Name(s): RPL8 Gene View ... Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the ...
http://www.rcsb.org/pdb/explore/explore.do?structureId=4D5Y
*  RCSB PDB - 4DR5: Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically...
... crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound ... Our crystal structures display a significant local distortion of 16S ribosomal RNA induced by streptomycin, including the ... selects aminoacyl-transfer RNAs with anticodons matching the messenger RNA codon present in the A site of the small ribosomal ... selects aminoacyl-transfer RNAs with anticodons matching the messenger RNA codon present in the A site of the small ribosomal ...
https://www.rcsb.org/structure/4DR5
*  RCSB PDB - 5K0Y: m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary...
18S ribosomal RNA. A. 1776. Oryctolagus cuniculus. Entity ID: 3. Molecule. Chains. Length. Organism. ... 40S ribosomal protein S27. Y. 84. Oryctolagus cuniculus. Mutation(s): 0 Gene Names: LOC100345694 (LOC100345044, LOC100348261, ... which leads to mRNA attachment to the small ribosomal 40S subunit, mRNA scanning for start codon, and accomm ... ... which leads to mRNA attachment to the small ribosomal 40S subunit, mRNA scanning for start codon, and accommodation of ...
https://www.rcsb.org/structure/5K0Y
*  RCSB PDB - Protein Feature View - ATP-dependent RNA helicase DbpA - P42305 (DBPA BACSU)
DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit. Has an RNA-dependent ATPase activity, which is ... Contains an N-terminal domain that binds non-specifically to RNA and a C-terminal domain that binds specifically and tightly to ... Undergoes a conformation change in the helicase core upon binding of RNA and ATP. UniProt ... specific for 23S rRNA, and a 3' to 5' RNA helicase activity that uses the energy of ATP hydrolysis to destabilize and unwind ...
http://www.rcsb.org/pdb/protein/P42305