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*  Ribosomal RNA methyltransferase FtsJ domain (IPR002877) | InterPro | EMBL-EBI
Ribosomal RNA methyltransferase FtsJ domain (IPR002877) *Adrift-type ribose 2-O-methyltransferase domain (IPR025807) ... Ribosomal RNA methyltransferase FtsJ domain (IPR002877). Short name: rRNA_MeTrfase_FtsJ_dom ... RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the ... RNA methylation under heat shock control.. Mol. Cell 6 349-60 2000 ...
http://www.ebi.ac.uk/interpro/entry/IPR002877
*  40S ribosomal protein S4, X isoform (P62703) | InterPro | EMBL-EBI
GO:0003723 RNA binding GO:0003735 structural constituent of ribosome Cellular Component. GO:0005622 intracellular GO:0005840 ...
http://www.ebi.ac.uk/interpro/protein/P62703
*  50S ribosomal protein L21 (A0PU17) | InterPro | EMBL-EBI
GO:0003723 RNA binding GO:0003735 structural constituent of ribosome Cellular Component. GO:0005622 intracellular GO:0005840 ...
http://www.ebi.ac.uk/interpro/protein/A0PU17
*  40S ribosomal protein S4, Y isoform 1 (P22090) | InterPro | EMBL-EBI
GO:0003723 RNA binding GO:0003735 structural constituent of ribosome Cellular Component. GO:0005622 intracellular GO:0005840 ...
http://www.ebi.ac.uk/interpro/protein/P22090
*  Search: | InterPro | EMBL-EBI
It activates ribosomal RNA transc... Low calcium response V antigen (IPR005413) The type III secretion system of Gram-negative ...
http://www.ebi.ac.uk/interpro/search?q=&start=40
*  Nucleotide-binding alpha-beta plait domain superfamily (IPR012677) | InterPro | EMBL-EBI
Evolution of the large-subunit ribosomal RNA binding site for protein L23/25.. Mol. Biol. Evol. 14 578-88 1997 ... Probable RNA-binding protein 46, RNA recognition motif 1 (IPR034434). *Putative RNA-binding protein 27, RNA recognition motif ( ... RNA-binding protein Musashi homologue, RNA recognition motif 1 (IPR034130). *DAZ-associated protein 1, RNA recognition motif 1 ... SR140, RNA recognition motif (IPR035009). *Serine/arginine-rich splicing factor SRSF4-like, RNA recognition motif 1 (IPR035585) ...
http://www.ebi.ac.uk/interpro/entry/IPR012677
*  PDB 1sm1 structure summary ‹ Protein Data Bank in Europe (PDBe) ‹ EMBL-EBI
5S ribosomal RNA Chain: 9 Molecule details › Chain: 9. Length: 124 nucleotides. Theoretical weight: 39.91 KDa. Sequence domains ... 50S ribosomal protein L33. *50S ribosomal protein L34. *50S ribosomal protein L35. *50S ribosomal protein L36. *50S ribosomal ... 50S ribosomal protein L3. *50S ribosomal protein L4. *50S ribosomal protein L5. *50S ribosomal protein L6. *50S ribosomal ... 50S ribosomal protein L11. *50S ribosomal protein L13. *50S ribosomal protein L14. *50S ribosomal protein L15. *50S ribosomal ...
https://www.ebi.ac.uk/pdbe/entry/pdb/1SM1
*  Nucleolar protein 19 (IPR022592) | InterPro | EMBL-EBI
RNA Biol 8 1158-72 2011. GO terms. Biological Process. GO:0042274 ribosomal small subunit biogenesis ... Nucleolar protein 19 (NOP19) plays an essential role in 40S ribosomal subunit biogenesis [PMID: 21941128]. ... protein Nop19p interacts preferentially with Utp25p and Dhr2p and is essential for the production of the 40S ribosomal subunit ...
http://www.ebi.ac.uk/interpro/entry/IPR022592
*  Proteins matched: MAP1B NEURAXIN (PS00230) | InterPro | EMBL-EBI
Ribosomal RNA small subunit methyltransferase H. Spirochaetaceae bacterium 4572_7. Loading... A0A212C8J7 Uncharacterized ...
http://www.ebi.ac.uk/interpro/ISignatureProteins?sig=PS00230&query=P
*  Ribosomal protein S5 domain 2-type fold, subgroup (IPR014721) | InterPro | EMBL-EBI
Structures of prokaryotic ribosomal proteins: implications for RNA binding and evolution.. Biochem. Cell Biol. 73 979-86 1995 ... Domain 2 of the ribosomal protein S5 has a left-handed beta-alpha-beta fold that is found in numerous RNA/DNA-binding proteins ... Ribosomal protein S5 domain 2-type fold, subgroup (IPR014721). Short name: Ribosomal_S5_D2-typ_fold_subgr ... Translational machinery components (ribosomal proteins S5 and S9, and domain IV of elongation factors EF-G and eEF-2) [PMID: ...
https://www.ebi.ac.uk/interpro/entry/IPR014721
*  rADc (SM00650) | InterPro | EMBL-EBI
Ribosomal RNA adenine methylase transferase, N-terminal (IPR020598) Member database. SMART. SMART (a Simple Modular ...
http://www.ebi.ac.uk/interpro/ISignatureOverview?sig=SM00650&query=R
*  PDB 3cme structure summary ‹ Protein Data Bank in Europe (PDBe) ‹ EMBL-EBI
Ribosomal Proteins L2, RNA binding domain * Ribosomal Proteins L2, C-terminal domain ... 50S ribosomal protein L37e. *50S ribosomal protein L44e. *50S ribosomal protein L5. *50S ribosomal protein L13. *50S ribosomal ... 50S ribosomal protein L24. *50S ribosomal protein L24e. *50S ribosomal protein L29. *50S ribosomal protein L30. *50S ribosomal ... 50S ribosomal protein L10. '> Ribosomal protein L10 * Occurring in:. *50S ribosomal protein L11. '> Ribosomal protein L11, C- ...
http://www.ebi.ac.uk/pdbe/entry/pdb/3cme
*  Search: All Pfam signatures | InterPro | EMBL-EBI
Ribosomal RNA adenine methyltransferase KsgA/Erm (IPR001737) Pfam signature: PF00398 Yeast PIR protein repeat (IPR000420) Pfam ... Influenza RNA-dependent RNA polymerase subunit PB1 (IPR001407) Pfam signature: PF00602 Influenza RNA-dependent RNA polymerase ... Ribosomal protein S28e (IPR000289) Pfam signature: PF01200 Ribosomal protein S8e/ribosomal biogenesis NSA2 (IPR022309) Pfam ... Ribosomal Proteins L2, RNA binding domain (IPR022666) Pfam signature: PF00181 Glycoside hydrolase, family 19, catalytic ( ...
http://www.ebi.ac.uk/interpro/member-database/Pfam
*  Ribonuclease III domain (IPR000999) | InterPro | EMBL-EBI
It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA ... RNA interference) and miRNA (micro-RNA) gene silencing [PMID: 14983173, PMID: 15066275, PMID: 11809414]. ... Crystallographic and modeling studies of RNase III suggest a mechanism for double-stranded RNA cleavage.. Structure 9 1225-36 ... RNAse III is a double stranded RNA-specific endonuclease [PMID: 11738048, PMID: 15016361]. Prokaryotic RNAse III is important ...
https://www.ebi.ac.uk/interpro/entry/IPR000999
*  Ribosomal L18e/L15P superfamily (IPR036227) | InterPro | EMBL-EBI
Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements.. Mol. Cell 22 533-43 2006 ... L15 and L18e ribosomal proteins share a common structure consisting mainly of parallel beta sheets (beta-alpha-beta units) with ... This superfamily includes higher eukaryotic ribosomal 60S L27A, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, ...
https://www.ebi.ac.uk/interpro/entry/IPR036227
*  Small-subunit processome, Utp11 (IPR007144) | InterPro | EMBL-EBI
A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis.. Nature 417 967-70 2002 ... A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis.. Nature 417 967-70 2002 ... RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components.. Genes Dev. 18 2506-17 ... A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU ...
http://www.ebi.ac.uk/interpro/entry/IPR007144
*  DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site (IPR008193) | InterPro | EMBL-EBI
RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of ... Short name: RNA_pol_Rpb11_13-16kDa_CS Description. DNA-directed RNA polymerases EC:2.7.7.6 (also known as DNA-dependent RNA ... RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. ... Yeast RNA polymerase II subunit RPB11 is related to a subunit shared by RNA polymerase I and III.. Gene Expr. 3 77-82 1993 ...
http://www.ebi.ac.uk/interpro/entry/IPR008193
*  DNA-directed RNA polymerase, 30-40kDa subunit, conserved site (IPR001514) | InterPro | EMBL-EBI
RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of ... Short name: DNA-dir_RNA_pol_30-40kDasu_CS Description. DNA-directed RNA polymerases EC:2.7.7.6 (also known as DNA-dependent RNA ... RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. ... RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The ...
http://www.ebi.ac.uk/interpro/entry/IPR001514
*  DNA-directed RNA polymerase, subunit E/RPC8 (IPR004519) | InterPro | EMBL-EBI
RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of ... RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. ... RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The ... DNA-directed RNA polymerases EC:2.7.7.6 (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ...
http://www.ebi.ac.uk/interpro/entry/IPR004519
*  Ribosomal protein L11/L12 (IPR000911) | InterPro | EMBL-EBI
A detailed view of a ribosomal active site: the structure of the L11-RNA complex.. Cell 97 491-502 1999 ... Ribosomal protein L11/L12 (IPR000911). Short name: Ribosomal_L11/L12 Overlapping homologous superfamilies *Ribosomal protein ... The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit.. J. Mol. Biol. 340 141 ... Ribosomal protein L11 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L11 is known to bind ...
http://www.ebi.ac.uk/interpro/entry/IPR000911
*  DNA binding HTH domain, Fis-type (IPR002197) | InterPro | EMBL-EBI
It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown ...
http://www.ebi.ac.uk/interpro/entry/IPR002197
*  Nucleolar complex protein 4 (IPR027193) | InterPro | EMBL-EBI
In Saccharomyces cerevisiae, Noc4 is involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. It forms ... A Noc complex specifically involved in the formation and nuclear export of ribosomal 40 S subunits.. J. Biol. Chem. 278 4072-81 ... a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits [PMID: 12446671, PMID: 15590835, ...
http://www.ebi.ac.uk/interpro/entry/IPR027193
*  Ribosome maturation protein Sdo1/SBDS, central domain superfamily (IPR037188) | InterPro | EMBL-EBI
Members of this superfamily play a role in RNA metabolism [PMID: 15701631, PMID: 15701634]. In yeast Sdo1 is involved in the ... biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 ( ... The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism.. J. Biol. Chem. 280 19213-20 2005 ...
http://www.ebi.ac.uk/interpro/entry/IPR037188
*  S1 domain (IPR003029) | InterPro | EMBL-EBI
The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The ... The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold.. Cell 88 235-42 1997 ... The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold.. Cell 88 235-42 1997 ... Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site [PMID: 9008164]. ...
https://www.ebi.ac.uk/interpro/entry/IPR003029
*  Ribosomal protein S10, conserved site (IPR018268) | InterPro | EMBL-EBI
A new model for the three-dimensional folding of Escherichia coli 16 S ribosomal RNA. II. The RNA-protein interaction data.. J ... Suppression of yeast RNA polymerase III mutations by the URP2 gene encoding a protein homologous to the mammalian ribosomal ... Ribosomal protein S10, conserved site (IPR018268). Short name: Ribosomal_S10_CS Description. Ribosomes are the particles that ... GO:0003723 RNA binding GO:0003735 structural constituent of ribosome Cellular Component. GO:0005622 intracellular GO:0005840 ...
http://www.ebi.ac.uk/interpro/entry/IPR018268