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*  A cross-validation scheme for machine learning algorithms in shotgun proteomics. - NextBio article
A cross-validation scheme for machine learning algorithms in shotgun proteomics. Viktor Granholm, William Stafford Noble, Lukas ... Here, we discuss how the target-decoy method is employed in machine learning for shotgun proteomics, focusing on how the ... A cross-validation scheme for machine learning algorithms in shotgun proteomics. BMC bioinformatics. 2012;13 Suppl 16:S3 ... Peptides are routinely identified from mass spectrometry-based proteomics experiments by matching observed spectra to peptides ...
http://www.nextbio.com/b/search/article.nb?id=23176259
*  Identification of novel, therapy-responsive protein biomarkers in a mouse model of Duchenne muscular dystrophy by aptamer-based...
Here we have utilised an aptamer-based proteomics approach to profile 1,129 proteins in the serum of wild-type and mdx ( ... Here we have utilised an aptamer-based proteomics approach to profile 1,129 proteins in the serum of wild-type and mdx ( ... therapy-responsive protein biomarkers in a mouse model of Duchenne muscular dystrophy by aptamer-based serum proteomics. ... therapy-responsive protein biomarkers in a mouse model of Duchenne muscular dystrophy by aptamer-based serum proteomics. ...
https://www.dpag.ox.ac.uk/publications/579560
*  Differential proteome and cellular adhesion analyses of the probiotic bacterium Lactobacillus acidophilus NCFM grown on...
Comparative proteomics using 2D-DIGE showed 43 unique proteins to change in relative abundance in whole cell lysates from NCFM ... Quantitative proteomics suggests metabolic reprogramming during ETHE1 deficiency. Publication: Research - peer-review › Journal ... A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community ... Comparative proteomics of oxidative stress response of Lactobacillus acidophilus NCFM reveals effects on DNA repair and ...
http://orbit.dtu.dk/en/publications/differential-proteome-and-cellular-adhesion-analyses-of-the-probiotic-bacterium-lactobacillus-acidophilus-ncfm-grown-on-raffinose--an-emerging-prebiotic
*  Proteomic changes in articular cartilage of human endemic osteoarthritis in China.
Proteomics On the subject. Cell and Molecular BiologyOrthopedicsBiochemistry and Molecular Biology Search outside of DiVA. ... 2011 (English)In: Proteomics, ISSN 1615-9853, E-ISSN 1615-9861, Vol. 11, no 14, 2881-90 p., 21681992Article in journal ( ...
http://umu.diva-portal.org/smash/record.jsf?pid=diva2:821932
*  Auditory Proteomics | Basic Science Research | Research Programs | Department of Otolaryngology | CWRU
Mark Chance, Ph.D. (Case Proteomics Center). Shuqing Liu, M.S. (Case Proteomics Center) ... Proteomics is now considered to be a priority and many in the hearing research field are going to look for that "complementary ... Auditory Proteomics. Please CLICK image for a larger view. A new window will be launched. ... This work will be carried out in collaboration with Mark Chance and his colleagues at the newly created Center for Proteomics ...
https://casemed.case.edu/Otolaryngology/research/auditory-proteomics.php
*  Post-translational Modifications, Proteolysis & Proteomics | Molecular Systems Biology
Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial *Christina Ludwig (tina.ludwig{at}tum.de)*, ... 3Proteomics Core Facility, European Molecular Biology Laboratory, Heidelberg, Germany. *↵* Corresponding author. Tel: +49 6221 ... Proteomics and phosphoproteomics analyses in melanoma cells identify CDK2 as a driver of resistance to both BRAF and Hsp90 ... Proteomics and phosphoproteomics analyses in melanoma cells identify CDK2 as a driver of resistance to both BRAF and Hsp90 ...
http://msb.embopress.org/collection/post-translational-modifications-proteolysis-proteomics
*  Post-translational Modifications, Proteolysis & Proteomics | EMBO Molecular Medicine
5Proteomics and Biological Resource Management, Department of Protein Chemistry Genentech, 1 DNA Way, South San Francisco, CA, ... Comparative proteomics reveals a diagnostic signature for pulmonary head‐and‐neck cancer metastasis ... based proteomics and validated in independent patient cohorts. ...
http://embomolmed.embopress.org/collection/post-translational-modifications-proteolysis-proteomics
*  LC-MSMS in Proteomics: Methods and Applications: Humana Press 9781607617792 Hardcover - BuySomeBooks
In LC-MSMS in Proteomics: Methods and Applications, experts in the field provide protocols and up-to-date reviews of the ... Comprehensive and cutting-edge, LC-MSMS in Proteomics: Methods and Applications presents the techniques and concepts necessary ... meaning that proteomics can now start competing with cDNA microarrays for the analysis of whole genomes. ... popular techniques for quantitative proteomics, such as multiple reaction monitoring, metabolic labelling, and chemical tagging ...
https://www.abebooks.com/LC-MSMS-Proteomics-Methods-Applications-Humana-Press/10798505327/bd
*  Orange juice authenticity: Proteomics fingerprinting - Ezine - separationsNOW.com
In a detailed proteomics study, they examined the proteins in the peel and pulp of oranges and compared the results obtained ... The results suggest that proteomics could be used to assess the origins and quality of products claiming to be based on orange ...
http://www.separationsnow.com/details/ezine/1520e459954/Orange-juice-authenticity-Proteomics-fingerprinting.html
*  Quantitative Proteomics for Cardiac Biomarker Discovery Using Isoproterenol-Treated Nonhuman Primates | SRI International
Quantitative Proteomics for Cardiac Biomarker Discovery Using Isoproterenol-Treated Nonhuman Primates. December, 2014 ... Song, B., Liu, Y., Parman, T., Liu, S., Miller, J. K., Liu, X., . . . Mirsalis, J. (2014). Quantitative proteomics for cardiac ... HomeOur WorkPublicationsQuantitative Proteomics for Cardiac Biomarker Discovery Using Isoproterenol-Treated Nonhuman Primates ...
https://www.sri.com/work/publications/quantitative-proteomics-cardiac-biomarker-discovery-using-isoproterenol-treated
*  Data Mining in Proteomics Using Grid Computing: Medicine & Healthcare Book Chapter | IGI Global
The scope of this chapter is the presentation of Data Mining techniques for knowledge extraction in proteomics, taking into ... Data Mining in Proteomics Using Grid Computing: 10.4018/978-1-60566-374-6.ch013: ... There has been a recent shift in focus from genomics to proteomics, due to the fact that many consider proteomics to be the ... Proteomics is one of the key fields that exist in that overlapping area. In a nutshell, proteomics is the large-scale study of ...
https://www.igi-global.com/chapter/data-mining-proteomics-using-grid/35697
*  U-Vic Proteomics Centre Pushing Multiplexed MRM-MS for Protein Biomarker Discovery | GenomeWeb
Genome British Columbia Proteomics Centre have developed a multiplexed multiple-reaction monitoring mass spec assay capable of ... U-Vic Proteomics Centre Pushing Multiplexed MRM-MS for Protein Biomarker Discovery. Jul 08, 2013 ... Researchers at the University of Victoria, Genome British Columbia Proteomics Centre have developed a multiplexed multiple- ... Home » U-Vic Proteomics Centre Pushing Multiplexed MRM-MS for Protein Biomarker Discovery ...
https://www.genomeweb.com/proteomics/u-vic-proteomics-centre-pushing-multiplexed-mrm-ms-protein-biomarker-discovery
*  Fluoride Action Network | Perflorooctane sulphonate toxicity: Proteomics study of liver cell damage
Perflorooctane sulphonate toxicity: Proteomics study of liver cell damage. Source: SpectroscopyNow.com , January 15th, 2015 , ... Now, a group of Chinese scientists has used proteomics to see which hepatic proteins are influenced by the presence of PFOS, ...
http://fluoridealert.org/news/perflorooctane-sulphonate-toxicity-proteomics-study-of-liver-cell-damage/
*  Shotgun Proteomics Analysis of Foc TR4
... Print Reference this Disclaimer: This work has been submitted by a student. This is not ... With shotgun proteomics analysis, we screened some important candidate proteins/pathways critical to the early growth of Foc ... Quantitative proteomics results plus multiple verification results based on western blot, RT-PCR and in vitro anti-fungi assays ... This is because we are confident with our proteomics data in which ERG4 was further validated by western blot (Fig. 4) and also ...
https://www.ukessays.com/essays/biology/shotgun-proteomics-analysis-foc-tr4-7888.php
*  Proteomics: characterizing the cogs in the machinery of life. - Free Online Library
Proteomics: characterizing the cogs in the machinery of life.(Focus) by 'Environmental Health Perspectives'; Health, general ... typically employ expression proteomics methods. Functional Proteomics Functional proteomics encompasses a wide variety of ... Evolution of Proteomics In large measure, proteomics has emerged in parallel fashion with the other "-omics" fields such as ... Proteomics in Action: Cancer Detection Thanks to progress in clinical proteomics, someday soon a simple blood test could hold ...
https://www.thefreelibrary.com/Proteomics%3A+characterizing+the+cogs+in+the+machinery+of+life-a0112210864
*  Applied Proteomics, Co-Founded by Danny Hillis, Gets New CEO, $22.5M | Xconomy
Applied Proteomics hasn't exactly been operating in stealth mode since it was founded five years ago. Co-founders David Agus, a ... Now Applied Proteomics is raising the curtain on several steps that mark its progress beyond a seed-stage startup that was ... Applied Proteomics hasn't exactly been operating in stealth mode since it was founded five years ago. Co-founders David Agus, a ... After moving the headquarters to San Diego late last year, Applied Proteomics is today naming a new CEO-Peter Klemm, a veteran ...
https://www.xconomy.com/san-diego/2012/02/07/applied-proteomics-co-founded-by-danny-hillis-gets-new-ceo-22-5m/
*  Proteomics-journals|OMICS International|Journal Of Proteomics And Bioinformatics
Journal of Proteomics & Bioinformatics from OMICS Group published best research and peer-review articles related to proteome. * ... Clinical proteomics and the diagnosis is indispensable to develop a vital system for the proteome analysis. Automated ...
https://www.omicsonline.org/omics-study/top-journals-in-proteome-analysis.php
*  Reportlinker Adds Proteomics: Technologies and Global Mark... ( NEW YORK Sept. 3 /- Repor...)
3 /- Reportlinker.com announces that a ne... ...,Reportlinker,Adds,Proteomics:,Technologies,and,Global,Markets,Report, ... Use of Proteomics Software Leads to Better Quantitation of Proteomics Data Implementation and Integration of This Software Need ... TABLE 90 GLOBAL PROTEOMICS SERVICES MARKET BY PRODUCT, THROUGH 2014 ($ MILLIONS) TABLE 91 GLOBAL PROTEOMICS SERVICES MARKET BY ... TABLE 1 GLOBAL PROTEOMICS EQUIPMENT MARKET BY PRODUCT, THROUGH 2014 ($ MILLIONS). TABLE 2 GLOBAL PROTEOMICS EQUIPMENT MARKET BY ...
http://www.bio-medicine.org/biology-technology-1/Reportlinker-Adds-Proteomics-3A-Technologies-and-Global-Markets-Report-13844-1/
*  Reportlinker Adds Proteomics - Technologies, Markets and... ( NEW YORK Sept. 7 /- Reportlinker.com ...)
Proteomics,-,Technologies,,Markets,and,Companies,biological,advanced biology technology,biology laboratory technology,biology ... Table 5 1: Applications of proteomics in basic biological research125. Table 5 2: A sampling of proteomics research projects in ... Table 7 1: Applications of proteomics in human healthcare199. Table 7 2: Companies involved in applications of proteomics to ... Figure 8 3: Proteomics collaborations according to application areas278. Figure 8 4: Proteomics collaborations according to ...
http://www.bio-medicine.org/biology-technology-1/Reportlinker-Adds-Proteomics---Technologies--Markets-and-Companies-17238-1/
*  From genome to proteome--aim of human proteomics
... Nakamura, K; James, Peter LU and al., et (2004) In Seikagaku 76(10). p.1271- ...
https://lup.lub.lu.se/search/publication/600044
*  Proteomics: Structural Genomics
The rapidly expanding field of Proteomics includes large-scale studies into the structure and function of proteins, ... The rapidly expanding field of Proteomics includes large-scale studies into the structure and function of proteins, ...
https://scicasts.com/channels/proteomics/2035-channels/proteomics/structural-genomics/?start=10
*  Proteomics and Bioanalytics - NMI.de
", "Proteomics" and "Expert Review of Proteomics".. He is a member of the Scientific Advisory Board of the Plasma Proteomics ...
https://www.nmi.de/en/pharma-biotech/research-topics/proteomics-and-bioanalytics/
*  Parallel barcoding of antibodies for DNA-assisted proteomics
Gene TechnologyScience for Life Laboratory, SciLifeLabProteomics and Nanobiotechnology In the same journal. Proteomics On the ... 2014 (English)In: Proteomics, ISSN 1615-9853, E-ISSN 1615-9861, Vol. 14, no 21-22, p. 2432-2436Article in journal (Refereed) ... Parallel barcoding of antibodies for DNA-assisted proteomics. Dezfouli, Mahya KTH, School of Biotechnology (BIO), Gene ... DNA-assisted proteomics technologies enable ultra-sensitive measurements in multiplex format using DNA-barcoded affinity ...
http://kth.diva-portal.org/smash/record.jsf?pid=diva2:771097
*  Office of Cancer Clinical Proteomics Research | Page 6 |
OCCPR: A Leader in Cancer Proteomics and Proteogenomics. The mission of the NCI's Office of Cancer Clinical Proteomics Research ... University of Victoria Genome British Columbia Proteomics Centre Partners with CPTAC University of Victoria Genome British ... Columbia Proteomics Centre, a leader in proteomic technology development, has partnered with the U.S. National Cancer Institute ...
https://proteomics.cancer.gov/home?page=5
*  Research - Functional food against colon cancer: Development of a genomics and proteomics based screening assay
Development of a genomics and proteomics based screening assay. It was funded within Key Action 1 - Food, Nutrition and Health ... QLK1-1999-00706: Functional food against colon cancer: development of a genomics and proteomics based screening assay ... proteomics) involved in (colorectal) carcinogenesis. The aim of the present project is to develop a bioassay, based on genomic ...
http://ec.europa.eu/research/quality-of-life/ka1/volume2/qlk1-1999-00706.htm