Transcriptome analysis of the honey bee fungal pathogen, Ascosphaera apis: implications for host pathogenesis.Transcriptome analysis of the honey bee fungal pathogen, Ascosphaera apis: implications for host pathogenesis.

Molecular Sequence Annotation. Multigene Family / genetics. Onygenales / genetics*, pathogenicity. Phylogeny. Protein Structure ... The Maker annotation pipeline [9] was used to annotate the A. apis genome [7]. Maker masked repetitive sequences with ... Following the sequencing of the A. apis genome in 2006 [7], our comprehensive, transcriptome-informed gene annotations ... Manual annotation methods Transcripts were compared to sequences in GenBank. TBLASTX and BLASTX searches were done against ...
more infohttp://www.biomedsearch.com/nih/Transcriptome-analysis-honey-bee-fungal/22747707.html

Conceptual and ortholog-based maximum likelihood phylog | Open-iConceptual and ortholog-based maximum likelihood phylog | Open-i

Molecular Sequence Annotation. *Phenotype. *Phylogeny. *Proteome/genetics. *Sequence Analysis, DNA. *Trichothecenes/genetics ... Ideally these annotations would be supported by RNA data, but the RNA extractable from each of the four strains was too ... Ideally these annotations would be supported by RNA data, but the RNA extractable from each of the four strains was too ... Mentions: The phylogeny of the four Stachybotrys strains that were sequenced is shown in Figure 2A. The strains include two ...
more infohttps://openi.nlm.nih.gov/detailedresult.php?img=PMC4117958_12864_2013_6290_Fig2_HTML&req=4

Population split and historical mixture for Tibetan pig | Open-iPopulation split and historical mixture for Tibetan pig | Open-i

Molecular Sequence Annotation. *Polymorphism, Single Nucleotide. *Principal Component Analysis. *Receptors, N-Methyl-D- ...
more infohttps://openi.nlm.nih.gov/detailedresult.php?img=PMC4197311_12864_2014_6536_Fig2_HTML&req=4

Biomedical Engineering - Research Output
     - Penn StateBiomedical Engineering - Research Output - Penn State

Insights into the mechanical properties of the kinesin neck linker domain from sequence analysis and molecular dynamics ... Hariharan, V. & Hancock, W. O., Jun 1 2009, In : Cellular and Molecular Bioengineering. 2, 2, p. 177-189 13 p.. Research output ... Athanasiou, K. A. & Dong, C., Sep 1 2009, In : Cellular and Molecular Bioengineering. 2, 3, 1 p.. Research output: Contribution ...
more infohttps://pennstate.pure.elsevier.com/en/organisations/biomedical-engineering/publications/?ordering=publicationYearThenTitle&descending=false&page=16

Liliana D Florea - Research Output
     - Johns Hopkins UniversityLiliana D Florea - Research Output - Johns Hopkins University

Molecular Sequence Annotation Epitope prediction algorithms for peptide-based vaccine design. Florea, L. D., Halldórsson, B., ... A method for identifying alternative or cryptic donor splice sites within gene and mRNA sequences. Comparisons among sequences ... Improving gene annotation using peptide mass spectrometry. Tanner, S., Shen, Z., Ng, J., Florea, L. D., Guigó, R., Briggs, S. P ... Genome-guided transcriptome assembly in the age of next-generation sequencing. Florea, L. D. & Salzberg, S. L., Sep 2013, In : ...
more infohttps://jhu.pure.elsevier.com/en/persons/liliana-d-florea/publications/

ZFIN Publication: Howe et al., 2013ZFIN Publication: Howe et al., 2013

Molecular Sequence Annotation. *Pseudogenes/genetics. *Reference Standards. *Sex Determination Processes/genetics. *Zebrafish/ ... To examine this, we generated a high-quality sequence assembly of the zebrafish genome, made up of an overlapping set of ... Detailed automatic and manual annotation provides evidence of more than 26,000 protein-coding genes, the largest gene set of ... The zebrafish reference genome sequence and its relationship to the human genome ...
more infohttp://zfin.org/ZDB-PUB-130425-8

Chromosome 18 gene dosage map 2.0<...Chromosome 18 gene dosage map 2.0<...

This tool included the annotation of each gene as well as each phenotype associated region. The goal of these annotated genetic ... Over the course of the past decade, there have also been advances in our understanding of the molecular mechanisms underpinning ... This tool included the annotation of each gene as well as each phenotype associated region. The goal of these annotated genetic ... This tool included the annotation of each gene as well as each phenotype associated region. The goal of these annotated genetic ...
more infohttps://pennstate.pure.elsevier.com/en/publications/chromosome-18-gene-dosage-map-20

Wei Pan - Fingerprint
     - Experts@MinnesotaWei Pan - Fingerprint - [email protected]

Molecular Sequence Annotation Biological Science Disciplines Genetic Association Studies Kidney Quantitative Trait Loci ...
more infohttps://experts.umn.edu/en/persons/wei-pan/fingerprints/

VU Faculties - Research Output
     - Vrije Universiteit AmsterdamVU Faculties - Research Output - Vrije Universiteit Amsterdam

Molecular Sequence Annotation Humanities need a replication drive too. Peels, R. & Bouter, L., 21 Jun 2018, In : Nature. 558, ... Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells. Gupta, I., Collier, P. G., Haase, B ...
more infohttps://research.vu.nl/en/organisations/vu-faculties-2/publications/?type=%2Fdk%2Fatira%2Fpure%2Fresearchoutput%2Fresearchoutputtypes%2Fcontributiontojournal%2Fletter

Gary J Olsen - Research Output
     - University of Illinois at Urbana-ChampaignGary J Olsen - Research Output - University of Illinois at Urbana-Champaign

Molecular Sequence Annotation Proteins Research Personnel The essential genome of the crenarchaeal model Sulfolobus islandicus ... Davis, J. J. & Olsen, G. J., Jan 1 2011, In : Molecular biology and evolution. 28, 1, p. 211-221 11 p.. Research output: ... Badger, J. H. & Olsen, G. J., Apr 1999, In : Molecular biology and evolution. 16, 4, p. 512-524 13 p.. Research output: ... Jermiin, L. S., Olsen, G. J., Mengersen, K. L. & Easteal, S., Jan 1 1997, In : Molecular biology and evolution. 14, 12, p. 1296 ...
more infohttps://experts.illinois.edu/en/persons/gary-j-olsen/publications/?type=%2Fdk%2Fatira%2Fpure%2Fresearchoutput%2Fresearchoutputtypes%2Fcontributiontojournal%2Farticle&ordering=publicationYearThenTitle&descending=false&page=1

Esther Imperlini - Research Output
     - Italian Ministry of HealthEsther Imperlini - Research Output - Italian Ministry of Health

Molecular Sequence Annotation 2012 Protein cross-talk in CD133+ colon cancer cells indicates activation of the Wnt pathway and ... Caterino, M., Ruoppolo, M., Mandola, A., Costanzo, M., Orrù, S. & Imperlini, E., Jan 1 2017, In : Molecular BioSystems. 13, 12 ... Molecular effects of supraphysiological doses of doping agents on health. Imperlini, E., Mancini, A., Alfieri, A., Martone, D ... Molecular signatures of the insulin-like growth factor 1-mediated epithelial-mesenchymal transition in breast, lung and gastric ...
more infohttps://moh-it.pure.elsevier.com/en/persons/esther-imperlini/publications/

Robert Hitzemann - Publications
     - Oregon Health & Science UniversityRobert Hitzemann - Publications - Oregon Health & Science University

Introduction to sequencing the brain transcriptome. Hitzemann, R., Darakjian, P., Walter, N., Iancu, O., Searles, R. & McWeeney ... Cross-species molecular dissection across alcohol behavioral domains. Farris, S. P., Riley, B. P., Williams, R. W., Mulligan, M ... Genes, behavior and next-generation RNA sequencing. Hitzemann, R., Bottomly, D., Darakjian, P., Walter, N., Iancu, O., Searles ... High throughput sequencing in mice: A platform comparison identifies a preponderance of cryptic SNPs. Walter, N. A. R., ...
more infohttps://ohsu.pure.elsevier.com/en/persons/robert-hitzemann/publications/

Department of Biosciences and Informatics - Research Output
     - Keio UniversityDepartment of Biosciences and Informatics - Research Output - Keio University

Shindo, Y., Yamanaka, R., Suzuki, K., Hotta, K. & Oka, K., 2016 Aug 1, In : Biochimica et Biophysica Acta - Molecular Cell ... A Machine Learning Based Approach to de novo Sequencing of Glycans from Tandem Mass Spectrometry Spectrum. Kumozaki, S., Sato, ... Oda, K., Matsuoka, Y., Funahashi, A. & Kitano, H., 2005, In : Molecular systems biology [electronic resource].. 1. Research ... An algorithm for testing structure freeness of biomolecular sequences. Kobayashi, S., Yokomori, T. & Sakakibara, Y., 2004, In ...
more infohttps://keio.pure.elsevier.com/en/organisations/1611-department-of-biosciences-and-informatics/publications/?type=%2Fdk%2Fatira%2Fpure%2Fresearchoutput%2Fresearchoutputtypes%2Fcontributiontojournal%2Farticle&ordering=title&descending=false

OPUS at UTS: Complete Genome Sequence of the Cystic Fibrosis Pathogen Achromobacter xylosoxidans NH44784-1996 Complies with...OPUS at UTS: Complete Genome Sequence of the Cystic Fibrosis Pathogen Achromobacter xylosoxidans NH44784-1996 Complies with...

Molecular Sequence Annotation. en_US. dc.subject.mesh. Achromobacter denitrificans. en_US. ... Complete Genome Sequence of the Cystic Fibrosis Pathogen Achromobacter xylosoxidans NH44784-1996 Complies with Important ... Complete Genome Sequence of the Cystic Fibrosis Pathogen Achromobacter xylosoxidans NH44784-1996 Complies with Important ... Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important ...
more infohttps://opus.lib.uts.edu.au/handle/10453/117604

OPUS at UTS: Circleator: Flexible circular visualization of genome-associated data with BioPerl and SVG - Open Publications of...OPUS at UTS: Circleator: Flexible circular visualization of genome-associated data with BioPerl and SVG - Open Publications of...

Molecular Sequence Annotation. en_US. dc.subject.mesh. Polymorphism, Single Nucleotide. en_US. ... i) visualizing gene annotation and DNA sequence data from a GenBank flat file, (ii) displaying patterns of gene conservation in ... i) visualizing gene annotation and DNA sequence data from a GenBank flat file, (ii) displaying patterns of gene conservation in ... It leverages BioPerl to support standard annotation and sequence file formats and produces publication-quality SVG output. It ...
more infohttps://opus.lib.uts.edu.au/handle/10453/33898

Gene expression profiling of HGF/Met activation in neonatal mouse heart<...Gene expression profiling of HGF/Met activation in neonatal mouse heart<...

... annotation analysis revealed that the transcripts modulated by HGF were enriched for metabolic functions including: protein ... annotation analysis revealed that the transcripts modulated by HGF were enriched for metabolic functions including: protein ... annotation analysis revealed that the transcripts modulated by HGF were enriched for metabolic functions including: protein ... annotation analysis revealed that the transcripts modulated by HGF were enriched for metabolic functions including: protein ...
more infohttps://moh-it.pure.elsevier.com/en/publications/gene-expression-profiling-of-hgfmet-activation-in-neonatal-mouse-

Cost-effective Molecular Inversion Probe-Based ABCA4 Sequencing Reveals Deep-Intronic Variants in Stargardt Disease - PubMedCost-effective Molecular Inversion Probe-Based ABCA4 Sequencing Reveals Deep-Intronic Variants in Stargardt Disease - PubMed

smMIPs-based sequence analysis of coding and selected noncoding regions of ABCA4 enabled cost-effective mutation detection in ... Molecular Sequence Annotation Actions. * Search in PubMed * Search in MeSH * Add to Search ... Cost-effective Molecular Inversion Probe-Based ABCA4 Sequencing Reveals Deep-Intronic Variants in Stargardt Disease Mubeen Khan ... Cost-effective Molecular Inversion Probe-Based ABCA4 Sequencing Reveals Deep-Intronic Variants in Stargardt Disease Mubeen Khan ...
more infohttps://phgkb.cdc.gov/PHGKB/phgHome.action?action=forward&dbsource=phg&id=35870

Transcriptome analysis of the Cryptocaryon irritans tomont stage identifies potential genes for the detection and control of...Transcriptome analysis of the Cryptocaryon irritans tomont stage identifies potential genes for the detection and control of...

BLAST analysis showed that 74% of the UTs had significant similarity (E-value , 10-5) to sequences that are currently available ... Based on gene ontology annotation, functional groups were successfully assigned to 790 UTs. Genes encoding excretory/secretory ... BLAST analysis showed that 74% of the UTs had significant similarity (E-value , 10-5) to sequences that are currently available ... BLAST analysis showed that 74% of the UTs had significant similarity (E-value , 10-5) to sequences that are currently available ...
more infohttps://ukm.pure.elsevier.com/en/publications/transcriptome-analysis-of-the-cryptocaryon-irritans-tomont-stage-

Home - PublicationsHome - Publications

Gene expression regulation; Molecular sequence annotation; Parkinson disease. *Gene expression; Lipoproteins; Liver; Metabolism ... Base sequence; Conserved sequence; Genome; Regulatory sequences; RNA Splicing; Terminator regions (Genetics) ... Annotation. *Anti-allergic agents; Automatic data processing; Gene expression profiling; Gene expression regulation; ... Algorithms; Oligonucleotide array sequence analysis; Regression analysis; Reproducibility of results; Statistics. *Altitude; ...
more infohttps://livingsystems.kaust.edu.sa/Pages/Publications.aspx?y=2007

De novo genome assembly and annotation of Australias largest freshwater fish, the Murray cod (Maccullochella peelii), from...De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii), from...

High-Throughput Nucleotide Sequencing (MeSH) * Molecular Sequence Annotation (MeSH) * Perciformes (MeSH) * Repetitive Sequences ... with an estimated 148 Mbp of putative repetitive sequences was assembled from the combined sequencing data of 2 fish ... In this study, we report the whole genome sequence of the Murray cod to support ongoing population genetics, conservation, and ... De novo genome assembly and annotation of Australias largest freshwater fish, the Murray cod (Maccullochella peelii), from ...
more infohttps://scholars.latrobe.edu.au/display/publication220692

Biochemistry - Research Output
     - University of Illinois at Urbana-ChampaignBiochemistry - Research Output - University of Illinois at Urbana-Champaign

Molecular Sequence Annotation Databases Erratum to "A family of arabinose-inducible Escherichia coli expression vectors having ... Nucleotide sequence of a pea U2 snRNA gene. Hanley, B. A. & Schuler, M. A., Dec 11 1989, In : Nucleic acids research. 17, 23, 1 ...
more infohttps://experts.illinois.edu/en/organisations/biochemistry/publications/?type=%2Fdk%2Fatira%2Fpure%2Fresearchoutput%2Fresearchoutputtypes%2Fcontributiontojournal%2Fcomment&ordering=type&descending=false

Faculty of Computer Science and Biomedical Engineering (7000) - Research Outputs
     - Graz University of TechnologyFaculty of Computer Science and Biomedical Engineering (7000) - Research Outputs - Graz University of Technology

Coding and learning of behavioral sequences. Melamed, O., Gerstner, W., Maass, W., Tsodyks, M. & Markram, H., 2004, In : Trends ... ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. Bindea, G-L., ... Cellular and Molecular Life Sciences. 71, 9, p. 1741-1759. Research output: Contribution to journal › Article › Research › peer ... Closed form solution for T2 mapping with non-ideal refocusing of slice selective CPMG sequences. Petrovic, A., Scheurer, E. & ...
more infohttps://graz.pure.elsevier.com/en/organisations/faculty-of-computer-science-and-biomedical-engineering-7000/publications/?type=%2Fdk%2Fatira%2Fpure%2Fresearchoutput%2Fresearchoutputtypes%2Fcontributiontojournal%2Farticle&type=%2Fdk%2Fatira%2Fpure%2Fresearchoutput%2Fresearchoutputtypes%2Fcontributiontoperiodical%2Farticle&ordering=type&descending=false&page=11

Home - PublicationsHome - Publications

Gene expression regulation; Molecular sequence annotation; Parkinson disease. *Gene expression; Lipoproteins; Liver; Metabolism ... Base sequence; Conserved sequence; Genome; Regulatory sequences; RNA Splicing; Terminator regions (Genetics) ... Annotation. *Anti-allergic agents; Automatic data processing; Gene expression profiling; Gene expression regulation; ... Algorithms; Oligonucleotide array sequence analysis; Regression analysis; Reproducibility of results; Statistics. *Altitude; ...
more infohttps://livingsystems.kaust.edu.sa/Pages/Publications.aspx?y=2015

Carol R Buell - Publications
     - MSU ScholarsCarol R Buell - Publications - MSU Scholars

Plant genome annotation methods. Ouyang, S., Thibaud-Nissen, F., Childs, K. L., Zhu, W. & Buell, C. R. 2009 Methods in ... Chan, A. P., Rabinowicz, P. D., Quackenbush, J., Buell, C. R. & Town, C. D. Nov 1 2007 Methods in Molecular Biology. Vol. 406, ... Molecular Biology. Vol. 513, p. 263-282 20 p. (Methods in Molecular Biology; vol. 513). Research output: Research › Chapter ... Structural, Functional, and Comparative Annotation of Plant Genomes. Thibaud-Nissen, F., Wortman, J., Buell, C. R. & Zhu, W. ...
more infohttps://scholars.opb.msu.edu/en/persons/carol-r-buell-2/publications/?type=%2Fdk%2Fatira%2Fpure%2Fresearchoutput%2Fresearchoutputtypes%2Fcontributiontobookanthology%2Fchapter