Patent WO2009132089A2 - A method to identify asian soybean rust resistance quantitative trait loci ... - Google Patents
LOD = logio (MLE for the presence of a QTL/MLE given no linked QTL). The LOD score essentially indicates how much more likely ... A response score can also reflect an average score for multiple leaves or tests, such that scores may have numerical values ... In another aspect, a marker exhibits a LOD score of 2 or greater, 3 or greater, or 4 or greater with ASR resistance, measuring ... LOD,2). FIG. 3 depicts the positions of ASR locus 16 on linkage group D2. To the right is the legend for the LOD plot for the ...http://www.google.com.au/patents/WO2009132089A2?cl=en
Significance Thresholds for Quantitative Trait Locus Mapping Under Selective Genotyping | Genetics
The distribution of LOD scores from the multiple imputations obtained at the position of the maximum overall LOD score, for ... the inflation in LOD scores in the unstratified permutation test for standard interval mapping and the deflation in LOD scores ... the distribution of LOD scores across imputations at the position of maximum LOD has a large spread, reflecting the variability ... is smaller than the LOD under complete genotyping. On the other hand, the LOD under selective genotyping is close to the LOD ...http://www.genetics.org/content/177/3/1963
Identification of Quantitative Trait Loci Controlling Floral Morphology of Rice Using a Backcross Population between Common...
2 with LOD value of 5.2. Two significant QTLs for SGL were also detected, one of which had high LOD score (15.3) and completely ... 5 (Figure 4). As for GW, two QTLs with high LOD scores of 8.5 on chr. 2 and 12.4 on chr. 5 were respectively detected in the ... QTL positions are represented as bars with the LOD peak shown by triangles. The abbreviations of the traits are explained in ... 2.5 software  . The presence of a putative QTL was determined based on the optical logarithm of odds (LOD) threshold values ...http://www.scirp.org/journal/PaperInformation.aspx?paperID=74787&
Quantitative trait loci identification, fine mapping and gene expression profiling for ovicidal response to whitebacked...
Based on the QTL analysis for WLs, the distribution of the LOD scores on chromosome 6 was determined (Figure 4A). There was a ... The LOD (Logarithm of Odds) scores were 12.23 and 12.14 in 2006 and 2007, respectively. Their proportion of the phenotypic ... The presence of a QTL was defined as an LOD score larger than 2.0. The genetic variance explained by each QTL and the QTL ... Circle sizes indicate the LOD score for watery lesions. Blue and red circles indicate QTLs identified in 2006 and 2007, ...https://bmcplantbiol.biomedcentral.com/articles/10.1186/1471-2229-14-145
What is a LOD Score? (with pictures)
If the LOD score is high, then the traits are closely linked... ... A LOD score is the likelihood of linkage between two genetic ... A LOD score is a representation of the likelihood of a linkage between two genetic traits. If the score is high, it means that ... The LOD score is determined by dividing the likelihood of linkage by the likelihood of no linkage. Typically, scores are ... To determine a LOD score, a data sample is needed, and in this type of statistical analysis, the bigger the sample, the better ...http://www.wisegeek.org/what-is-a-lod-score.htm
Mapping loci influencing blood pressure in the Framingham pedigrees using model-free LOD score analysis of a quantitative trait...
This paper presents a method of performing model-free LOD-score based linkage analysis on quantitative traits. It is ... On chromosome 17 LOD scores of 3.8 and 3.1 at markers GATA25A04 and ATC6A06 reported by Levy et al.  correspond to the ... Furthermore, the marker GATA64A09 on chromosome 10, which has a LOD score of 2.0 in the study by Levy et al.  has an MLOD ... These LOD scores are equivalent to those produced by the MFLINK program and the associated likelihood ratio statistics, ...https://bmcgenet.biomedcentral.com/articles/10.1186/1471-2156-4-S1-S74
AKC Canine Health Foundation
Traditionally, a lod score of three or greater is accepted as evidence of linkage between two markers or a marker and a disease ... Lod Score. Synonyms: Definition: log of the odds supporting linkage of two loci. Traditionally, a lod score of three or greater ...http://www.akcchf.org/canine-health/glossary/lod-score.html
Latest Result for Beitar Tel Aviv Ramla vs. Hapoel Bnei Lod | Scores.co.uk
Hapoel Bnei Lod match from 19/05/17. Discover Scores.co.uk for latest match information. ... The latest score from the Beitar Tel Aviv Ramla vs. ...http://scores.co.uk/football/results/beitar-tel-aviv-ramla/hapoel-bnei-lod/19-05-17/
Reducing the exome search space for Mendelian diseases using genetic linkage analysis of exome genotypes | Genome Biology |...
The median difference between the WES and array LOD scores across positions where either achieved the maximum score was close ... Linkage analysis and LOD score concordance. Prior to performing linkage analysis on exome and array SNP genotypes, we selected ... We found that LOD scores obtained from WES genotypes agreed well with those obtained from array genotypes from the same ... LOD scores were estimated at positions spaced 0.3 cM apart, and CEU allele frequencies were used. ...https://genomebiology.biomedcentral.com/articles/10.1186/gb-2011-12-9-r85
Genetic basis of tissue specificity of vasculitis in MRL/lpr mice - Yamada - 2003 - Arthritis & Rheumatology - Wiley Online...
LOD score. Mode of inheritance in MRL alleles (QTL analysis). Sex. **. LOD = logarithm of odds; QTL = quantitative trait locus. ... Logarithm of odds (LOD) score plots for quantitative trait loci on chromosome 4 controlling vasculitis in the main branches of ... The position of the locus was identical to that determined by QTL analysis (Figure 2), in which the highest LOD score was 3.9 ... These results were supported by QTL analysis, in which the highest LOD score on chromosome 8 was 4.5 at marker position D8Mit31 ...http://onlinelibrary.wiley.com/doi/10.1002/art.10952/full
Linkage Analysis of a Cluster-Based Quantitative Phenotype Constructed from Pulmonary Function Test Data in 27...
Figure Figure44 shows the LOD scores after the addition of these markers. High LOD scores in model free variance-components ... The effect of this perturbation is to move the maximal LOD score to another location on the genome, but this LOD score is only ... When there are 3 clusters the LOD score at this locus is 3.2017 and when there are 5 clusters the LOD score is 2.6262. ... and computed LOD scores. The results of this analysis were that the largest LOD score was always at our previously identified ...http://pubmedcentralcanada.ca/pmcc/articles/PMC2861531/
A. Jonathan Shaw, Professor of Biology and Curator of Bryophytes, Duke Herbarium
Lod Score • Microsatellite Repeats • Mitochondria • Models, Biological • Models, Genetic • Molecular Sequence Data • Mosses • ...http://fds.duke.edu/db/aas/Herbarium/brophytes/shaw
4 Ways to Lower CPK Levels Naturally - wikiHow
Score. 0 / 0 Method 1 Quiz. Which of the following foods can you add to your diet to naturally lower your CPK levels? ...https://www.wikihow.com/Lower-CPK-Levels-Naturally
3 Ways to Study Anatomy - wikiHow
Calculate LOD Score How to. Make a Self Sufficient Biodome References. * ↑ https://www.myedu.com/college-degree-timeline/ ...https://www.wikihow.com/Study-Anatomy
A genome-wide screen and linkage mapping for a large pedigree with episodic ataxia.
... wide screen in a large pedigree segregating a novel episodic ataxia and found significant linkage on 1q42 with a multipoint lod ... Lod Score. Male. Middle Aged. Mutation / genetics*. Pedigree. Phenotype. Vertigo / diagnosis, genetics, physiopathology. ... Haplotype analysis and fine mapping yielded a peak 2-point lod score of 4.14 and indicated a 4-cM region on 1q42 that is likely ... in a large pedigree segregating a novel episodic ataxia and found significant linkage on 1q42 with a multipoint lod score of ...http://www.biomedsearch.com/nih/genome-wide-screen-linkage-mapping/16009908.html
Regulatory Hotspots Are Associated with Plant Gene Expression under Varying Soil Phosphorus Supply in Brassica rapa | Plant...
LOD Score. Additive Effect. LOD Threshold (P , 0.05). cM. Dry weight at optimal [P]ext (mg). A01. 3. 13.6. 3.632. −0.010. 2.352 ...http://www.plantphysiol.org/content/156/3/1230/tab-figures-data
QTL mapping for Mediterranean corn borer resistance in European flint germplasm using recombinant inbred lines | BMC Genomics |...
Concerning ear resistance traits, one QTL was detected for cob damage rate with a LOD score lower than 3 and a validation ... minimum LOD of 3.00, maximum distance of 30 cM and maximum unlinked LOD of 2.00). Multipoint linkage analysis was performed for ... A LOD threshold of 2.4 was determined by permutation tests that ensures an experiment wise error rate of p , 0.20. A ...https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-11-174
Quantitative Trait Loci (QTL) Mapping
Lod score curves of a multiple interval mapping analysis are shown on a linkage map of chromosomes 3 and 2 (a, b). Marker ...http://www.els.net/WileyCDA/ElsArticle/refId-a0005410.html
tint Maps to Mouse Chromosome 6 and May Interact With a Notochordal Enhancer of Brachyury | Genetics
LOD scores for both models. Top, original phenotype; bottom, reclassified phenotype based on typing for T and the tint region ... When we ran pair wise recombination fractions and LOD scores on both models using R/qtl (Li et al. 2006), it appeared that the ...http://www.genetics.org/content/177/2/1151
Common Concepts in Statistics [M.Tevfik DORAK]
Determination of LOD scores requires pedigree analysis and a score of ,3 is traditionally taken as evidence for linkage. ... LOD Score: Stands for the logarithm of odds. It is a statistical measure of the likelihood that two genetic markers occur ... Z score: The Z score or value expresses the number of standard errors by which a sample mean lies above or below the true ... LOD score has nothing to do with linkage disequilibrium.. Log 0 is undefined. If we need to use a log transformation but some ...http://dorakmt.tripod.com/stat/glosstat.html
GENETIC EPIDEMIOLOGY GLOSSARY [M.Tevfik DORAK]
LOD score has nothing to do with linkage disequilibrium. See also Significance of LOD Scores by Dave Curtis and a presentation ... LOD score: The LOD score method for testing linkage was first proposed by Morton in 1955 (Morton, 1955). Stands for the ... Determination of LOD scores requires pedigree analysis and a score of ,+3 is traditionally taken as evidence for linkage (and - ... free recombination (q = 0.5) (Elston, 1998; Borecki, 2001). Thus, the LOD score serves as a test of the null hypothesis of free ...http://dorakmt.tripod.com/epi/glosge.html
QIMR Genetic Epidemiology Laboratory Home Page
Lod Score. genetics. Membrane Transport Proteins. metabolism. Molecular Sequence Data. metabolism. Polymorphism, Single ... association LOD = 444) than our previous best OCA2 haplotype. Comparison of sequence alignments of multiple species showed that ...https://genepi.qimr.edu.au/general/publicationsfulllisting.cgi?pmid=18252222
Prior knowledge guided eQTL mapping for identifying candidate genes | BMC Bioinformatics | Full Text
QTL mapping is performed using the R/qtl R package . All QTLs with LOD (logarithm (base 10) of odds) score at p-value ,0.05 ... Alexa A, Rahnenführer J, Lengauer T. Improved scoring of functional groups from gene expression data by decorrelating GO graph ... Stem rust infection type was measured using numeric infection type scores . The gene expression experiments were performed ...https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1387-9
QIMR Genetic Epidemiology Laboratory Home Page
Suggestive linkage (LOD > 2.2) was found on chromosomes 4, 5, 6, 10, 17, and 20. After correcting for multiple testing, ... Lod Score. genetics. Male. genetics. Memory. physiology. Phenotype. physiology. Twins, Dizygotic. genetics. ...https://genepi.qimr.edu.au/general/publicationsfulllisting.cgi?pmid=16331531
Common Terms in Genetics [M.Tevfik DORAK]
The lod score (Z) of +3 means 1000:1 odds of linkage and is considered evidence for linkage. A lod score of -2 is odds of 100:1 ... Lod score: Logarithm (10) of the odds favoring linkage obtained from the statistical analysis of linkage. ...http://dorakmt.tripod.com/genetics/glossary.html