Author: 'Cho, Jin Kyong' / Subject: high-throughput nucleotide sequencing - PubAg Search Results
... high-throughput nucleotide sequencing Remove constraint Subject: high-throughput nucleotide sequencing Start Over ... Prunus cerasus; cultivars; databases; fruit trees; gardens; genes; genetic markers; high-throughput nucleotide sequencing; ... Prunus persica; cultivars; databases; genetic markers; genome; high-throughput nucleotide sequencing; leaves; peaches; proteins ... Prunus salicina; cultivars; data collection; high-throughput nucleotide sequencing; orchards; plums; proteins; transcriptome; ...https://pubag.nal.usda.gov/?f%5Bsubject_term%5D%5B%5D=high-throughput+nucleotide+sequencing&q=%22Cho%2C+Jin+Kyong%22&search_field=author
Utilization of high throughput genome sequencing technology for large scale single nucleotide polymorphism discovery in red...
Utilization of high throughput genome sequencing technology for large scale single nucleotide polymorphism discovery in red ... Utilization of high throughput genome sequencing technology for large scale single nucleotide polymorphism discovery in red ... Utilization of high throughput genome sequencing technology for large scale single nucleotide polymorphism discovery in red ... After aligning sequence to the bovine reference genome build UMD 3.0 and binning reads into one Mbp groups; reads were ...https://haldanessieve.org/2015/09/29/utilization-of-high-throughput-genome-sequencing-technology-for-large-scale-single-nucleotide-polymorphism-discovery-in-red-deer-and-canadian-elk/
Full-genome deep sequencing and phylogenetic analysis of novel human betacoronavirus. - PubMed - NCBI
computer-aided design; coronavirus infections; disease transmission; evolution; high-throughput nucleotide sequencing; ... Our high-throughput sequencing yielded a substantial depth of genome sequence assembly and showed the minority viral variants ... Nucleotide positions showing nucleotides that differed from the consensus were tabulated. Colored dots indicate nucleotide ... The sequences of the 3 genomes were aligned, and differences between the sequence of England/Qatar/2012 and England1 (upper row ...https://www.ncbi.nlm.nih.gov/pubmed?cmd=Retrieve&db=PubMed&list_uids=23693015&dopt=Abstract
Rapid spread of influenza A(H1N1)pdm09 viruses with a new set of specific mutations in the internal genes in the beginning of...
A(H1N1)pdm09; Russia; high-throughput nucleotide sequencing; influenza. PMID:. 26992820. PMCID:. PMC4910175. DOI:. 10.1111/irv. ... Maximum‐likelihood phylogenetic trees based on HA (left) and NA (right) nucleotide sequences of influenza A(H1N1)pdm09 viruses ... The square on the map corresponds to a twofold difference in the homologous HI titer between the vaccine strain and the tested ... We performed antigenic analysis of 108 and whole-genome sequencing of 77 influenza A(H1N1)pdm09 viruses from Moscow and Saint ...https://www.ncbi.nlm.nih.gov/pubmed/26992820
The Master Registry of Oncology Outcomes Associated With Testing and Treatment - Full Text View - ClinicalTrials.gov
Molecular Sequence Data. Databases, Genetic. High-Throughput Nucleotide Sequencing. Massively-Parallel Sequencing. ... Any patient whose tumor has been sequencing using a multiplex method such as next-generation sequencing including hot-spot, ... Morash M, Mitchell H, Beltran H, Elemento O, Pathak J. The Role of Next-Generation Sequencing in Precision Medicine: A Review ... Any patient whose tumor has been tested for transcriptomic characteristics such as RNA sequencing ...https://clinicaltrials.gov/ct2/show/NCT04028479?term=adenoid+cystic+carcinoma&
Patente US6428752 - Cleaning deposit devices that form microarrays and the like - Google Patentes
High-throughput nucleotide library sequencing. WO2017053902A1. 23 Sep 2016. 30 Mar 2017. Abvitro Llc. High throughput process ... Methods for high throughput genotyping. US20080241831 *. 28 Mar 2007. 2 Oct 2008. Jian-Bing Fan. Methods for detecting small ... High throughput microarray spotting system and method. US20050106621 *. 27 Dic 2004. 19 May 2005. Winegarden Neil A.. Devices ... Methods for high throughput genotyping. US8039817. 1 May 2009. 18 Oct 2011. Illumina, Inc.. Compensator for multiple surface ...http://www.google.es/patents/US6428752?dq=flatulence
Travel - a risk factor for disease and spread of antibiotic resistance
High-Throughput Nucleotide Sequencing; Medication Adherence; Metagenome; Metagenomics; Patient Compliance; Proteobacteria; Risk ... Despite deep sequencing efforts, the sensitivity of metagenomics was not sufficient to detect acquisition of the low-abundant ... In conclusion, metagenomic sequencing of the intestinal microbiome of Swedish students returning from exchange programs in ... The most important risk factor for ESBL-PE colonization was travel destination, and the highest colonization rate was found in ...http://www.diva-portal.org/smash/record.jsf?pid=diva2:866644
Análise genético-molecular por sequenciamento paralelo em larga escala de portadores...
High-throughput nucleotide sequencing. Lipoatrophic. Monogenic diabetes. Neonatal diabetes mellitus. Wolfram syndrome. ... Objectives: (1) to develop a customized targeted massively parallel sequencing panel to sequence the rare types of monogenic ... Genetic research of index cases was done by massively parallel sequencing. Family segregation and confirmation of the variants ... Targeted massively parallel sequencing for rare monogenic diabetes forms and inherited lipodystrophy ...http://www.teses.usp.br/teses/disponiveis/5/5135/tde-11072019-092733/pt-br.php
BARD1 | Cancer Genetics Web
High-Throughput Nucleotide Sequencing. *Missense Mutation. *BRCA1. *Molecular Sequence Data. *Case-Control Studies ... Germline single nucleotide polymorphisms in ERBB3 and BARD1 genes result in a worse relapse free survival response for HER2- ... Higher BARD1 and BRCA1 expression is associated with worse prognosis of early breast cancer patients, especially the ones that ... Among high hereditary risk Chinese BC patients, 23.8% contained germline mutations, including 6.8% in non-BRCA1/2 genes. TP53 ...http://www.cancerindex.org/geneweb/BARD1.htm
RMut: R package for a Boolean sensitivity analysis against various types of mutations.
High-throughput Nucleotide Sequencing. Techniques of nucleotide sequence analysis that increase the range, complexity, ... and the number of copies of each nucleotide sequenced. The sequencing may be done by analysis of the synthesis or ligation ... High Throughput Drug Sensitivity Assay and Genomics- Guided Treatment of Patients With Relapsed or Refractory Acute Leukemia ... This clinical trial studies the feasibility of choosing treatment based on a high throughput ex vivo drug sensitivity assay in ...https://www.bioportfolio.com/resources/pmarticle/2320637/RMut-R-package-for-a-Boolean-sensitivity-analysis-against-various-types-of.html
NOTCH1 | Cancer Genetics Web
High-Throughput Nucleotide Sequencing. *NOTCH1. *Squamous Cell Carcinoma. *Whole Exome Sequencing. *Suppressor of Cytokine ... By combining whole-genome sequencing, SNP array, RNA sequencing, and FISH analyses, we defined a 1q23.1 biallelic minimally ... There was high consistency between the results of NGS-PCR technique and routine ARMS-PCR in KRAS and BRAF mutation detection. ... However, higher JAG1 expression was found in MCPyV-negative than in MCPyV-positive MCC (p. CONCLUSION: Expression of NOTCH3, as ...http://www.cancerindex.org/geneweb/NOTCH1.htm
The impact of single-cell RNA sequencing on understanding the functional organization of the immune system.
High-throughput Nucleotide Sequencing. Techniques of nucleotide sequence analysis that increase the range, complexity, ... DNA sequencing DNA sequencing is the process of determining the precise order of nucleotides within a DNA molecule. During DNA ... and the number of copies of each nucleotide sequenced. The sequencing may be done by analysis of the synthesis or ligation ... Single-cell RNA sequencing (scRNA-seq) is a powerful tool to study immune cells, which enables an unbiased way to discover ...https://www.bioportfolio.com/resources/pmarticle/1993352/The-impact-of-single-cell-RNA-sequencing-on-understanding-the-functional-organization.html
Identifying ChIP-seq enrichment using MACS.
High-Throughput Nucleotide Sequencing / methods*. Histones / genetics*. Models, Genetic*. Software*. Grant Support. ... the sequence-specific transcription factor FoxA1, the histone modification mark H3K4me3 with sharp enrichment and the H3K36me3 ... an estimate that increases with sequence coverage. MACS is open source and is available from http://liulab.dfci.harvard.edu/ ...http://www.biomedsearch.com/nih/Identifying-ChIP-seq-enrichment-using/22936215.html
Frontiers | Functional Characterization and Signaling Systems of Corazonin and Red Pigment Concentrating Hormone in the Green...
RPCH interacted with RPCHR with extremely high affinity (EC50 20pM). Neither receptor bound GnRH, nor the AKH/CRZ-related ... RPCH interacted with RPCHR with extremely high affinity (EC50 20pM). Neither receptor bound GnRH, nor the AKH/CRZ-related ... new insights from high-throughput nucleotide sequencing. PLoS ONE 10:e0145964. doi: 10.1371/journal.pone.0145964 ... MacManes, M. D. (2014). On the optimal trimming of high-throughput mRNA sequence data. Front. Genet. 5:13. doi: 10.3389/fgene. ...https://www.frontiersin.org/articles/10.3389/fnins.2017.00752/full
Hospital Microbiome Variations As Analyzed by High-Throughput Sequencing - PubMed
As the latest advances in sequencing technologies have allowed the unbiased identification of bacterial communities, we aimed ... High-Throughput Nucleotide Sequencing Actions. * Search in PubMed * Search in MeSH * Add to Search ... Hospital Microbiome Variations As Analyzed by High-Throughput Sequencing Marwa T ElRakaiby 1 2 , Soha Gamal-Eldin 3 , Magdy A ... Hospital Microbiome Variations As Analyzed by High-Throughput Sequencing Marwa T ElRakaiby et al. OMICS. 2019 Sep. . ...https://phgkb.cdc.gov/PHGKB/phgHome.action?action=forward&dbsource=amd&id=18996
Utility of High-Throughput DNA Sequencing in the Study of the Human Papillomaviruses - PubMed
... and the development of neoplastic epithelial lesions is of particular interest because of the high prevale … ... High-Throughput Nucleotide Sequencing* Actions. * Search in PubMed * Search in MeSH * Add to Search ... Utility of High-Throughput DNA Sequencing in the Study of the Human Papillomaviruses Noé Escobar-Escamilla 1 2 , José Ernesto ... Utility of High-Throughput DNA Sequencing in the Study of the Human Papillomaviruses Noé Escobar-Escamilla et al. Virus Genes. ...https://phgkb.cdc.gov/PHGKB/phgHome.action?action=forward&dbsource=amd&id=14800
Study of the Activated Macrophage Transcriptome - PubMed
High-Throughput Nucleotide Sequencing Actions. * Search in PubMed * Search in MeSH * Add to Search ... Next-generation sequencing of microRNAs uncovers expression signatures in polarized macrophages. Cobos Jiménez V, Bradley EJ, ... Sequencing of the first ayu (Plecoglossus altivelis) macrophage transcriptome and microarray development for investigation the ... The two mostly used techniques for transcriptome analysis are microarray and next generation sequencing. In this review we will ...https://pubmed.ncbi.nlm.nih.gov/26439118/
Origins and Functional Evolution of Y Chromosomes Across Mammals - PubMed
Here we trace Y evolution across 15 representative mammals on the basis of high-throughput genome and transcriptome sequencing ... but their repeat-rich nature has hampered sequencing and associated evolutionary studies. ... High-Throughput Nucleotide Sequencing Actions. * Search in PubMed * Search in MeSH * Add to Search ... Here we trace Y evolution across 15 representative mammals on the basis of high-throughput genome and transcriptome sequencing ...https://pubmed.ncbi.nlm.nih.gov/24759410/
Genetic Predisposition To Acquire a Polybasic Cleavage Site for Highly Pathogenic Avian Influenza Virus Hemagglutinin. -...
High-Throughput Nucleotide Sequencing Influenza A Virus, H5N1 Subtype Influenza in Birds RNA, Viral Virulence ... A reporter assay to detect nontemplated nucleotide insertions and deep-sequencing analysis of viral RNAs revealed that an ... Interestingly, nucleotide insertions associated with the HA cleavage site motif were not observed principally in the viral RNA ... This study shows the potential role of the viral RNA secondary structure for nucleotide insertions and demonstrates a key ...http://www.nextbio.com/b/search/article.nb?id=28196963
Diagnosing von Willebrand disease: genetic analysis - White Rose Research Online
Base Sequence; Hemophilia A; High-Throughput Nucleotide Sequencing; Humans; Multiplex Polymerase Chain Reaction; Sequence ... Polymerase chain reaction and Sanger sequencing have been mainstays of genetic analysis for several years. More recently, next- ... Algorithms based on next-generation sequencing data can also identify missing or duplicated regions. These newer techniques ... generation sequencing has become available, with the advantage that several genes can be simultaneously analyzed where ...http://eprints.whiterose.ac.uk/113477/
Applications filed at Aug 25 2016 | PRODUCTION OF CHROMIUM IRON ALLOYS DIRECTLY FROM CHROMITE ORE | Patents.com
HIGH-THROUGHPUT NUCLEOTIDE LIBRARY SEQUENCING. Provided herein are methods and composition for immune repertoire sequencing and ... HIGH-THROUGHPUT SINGLE-CELL ANALYSIS COMBINING PROTEOMIC AND GENOMIC INFORMATION. Disclosed herein are methods for single-cell ... HIGH MANGANESE STEEL SHEET HAVING HIGH STRENGTH AND EXCELLENT VIBRATION-PROOF PROPERTIES AND METHOD FOR.... The present ... The present invention relates to a method of capturing a target nucleic acid sequence in genome sequencing, e using a CRISPR ...http://patents.com/ap-20160825-p94.html
The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data Authors: Yan Guo, ... Critical region within 22q11.2 linked to higher rate of autism spectrum disorder Authors: Caitlin C. Clements, Tara L. Wenger, ...https://www.biomedcentral.com/about/institutional-support/membership/1600007240/1600007240?searchType=publisherSearch&sort=PubDate&query=email%3A
ST191 outbreak isolates are represented by multiple gen | Open-i
High-Throughput Nucleotide Sequencing. *Host-Pathogen Interactions/genetics/immunology. *Humans. *Phylogeny. Related in: ... Inspection of the sequence alignment revealed the presence of three regions of high SNP density in each of three isolates (12_ ... Inspection of the sequence alignment revealed the presence of three regions of high SNP density in each of three isolates (12_ ... Results: Our high resolution genomic approach reveals that the outbreak was caused by multiple genetic subtypes of L. ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC4256819_13059_2014_504_Fig2_HTML&req=4
Morphological characteristics of PRPF8 mutants and dele | Open-i
High-Throughput Nucleotide Sequencing. *Humans. *Molecular Sequence Data. *Real-Time Polymerase Chain Reaction ... Whole-RNA deep sequencing of primary cells from patients with PRPF8 abnormalities demonstrated consistent missplicing defects. ... Whole-RNA deep sequencing of primary cells from patients with PRPF8 abnormalities demonstrated consistent missplicing defects. ... Mentions: PRPF8 mutations are generally missense and scattered throughout the gene (Figure 1A,D). The high level of ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC4214909_nihms588443f2&req=4
Research progress of neuroblastoma related gene variations
Keywords: neuroblastoma, gene, high throughput nucleotide sequencing. INTRODUCTION. Neuroblastoma(NB), a childhood cancer of ... High-resolution mapping of copy-number alterations with massively parallel sequencing. Nature methods. 2009;6:99-103. [PMC free ... resulting in a low cost per base and a throughput on the gigabase (Gb) scale . Progress of sequencing technique of new ... generation promotes fast development of whole genome sequencing, whole genome exon sequencing and depth sequencing of target ...http://pubmedcentralcanada.ca/pmcc/articles/PMC5392342/