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*  Haplotype Structure of the ENPP1 Gene and Nominal Association of the K121Q Missense Single Nucleotide Polymorphism With...
Haplotype Structure of the ENPP1 Gene and Nominal Association of the K121Q Missense Single Nucleotide Polymorphism With ... Haplotype Structure of the ENPP1 Gene and Nominal Association of the K121Q Missense Single Nucleotide Polymorphism With ... Haplotype Structure of the ENPP1 Gene and Nominal Association of the K121Q Missense Single Nucleotide Polymorphism With ... Haplotype Structure of the ENPP1 Gene and Nominal Association of the K121Q Missense Single Nucleotide Polymorphism With ...
https://dash.harvard.edu/handle/1/4745730?show=full
*  Haplotype analysis of the Apolipoprotein A5 gene in Moroccan patients with the metabolic syndrome | Journal of Diabetes &...
The effects of APOA5 polymorphisms and constructed haplotypes on metabolic syndrome were estimated using logistic regression ... The haplotypes CCGT (OR = 3.223; p = 0.00278) and CGGT (OR = 8.234; p = 0.00534) were significantly associated with ... In this case-control study we investigated the relative contribution of commons APOA5 polymorphisms and haplotypes to the risk ... Two haplotypes showed significant association with MS. Haplotypes CCGT (OR = 3.223; 95% CI:1.43-7.25; p = 0.00278) and CGGT (OR ...
https://jdmdonline.biomedcentral.com/articles/10.1186/s40200-015-0160-3
*  Association of SNP Haplotypes of HKT Family Genes with Salt Tolerance in Indian Wild Rice Germplasm | Rice | Full Text
Haplotype analysis revealed haplotypes H5 and H1 of HKT1;5 and HKT2;3, respectively associated with high salinity tolerance. ... Haplotype analysis of HKT1;1 gene showed 13 haplotypes with haplotype number H12 having a single highly tolerant accession and ... HKT1;2 gene has diversified to 13 haplotypes, HKT1;3 into 10 haplotypes and HKT1;4 to 20 haplotypes. Network analysis of HKT1;5 ... Haplotype analysis revealed haplotypes H5 and H1 of HKT1;5 and HKT2;3, respectively associated with high salinity tolerance. ...
https://thericejournal.springeropen.com/articles/10.1186/s12284-016-0083-8
*  Polymorphism screening and haplotype analysis of the tryptophan hydroxylase gene (TPH1)and association with bipolar affective...
Haplotypes constructed using the PHASE 2.0 program [39] revealed a total of 70 haplotypes in combined controls and patients ( ... Haplotype distributions among 10 TPH1 SNPs were estimated and twelve haplotypes with frequency larger than 2 % in at least one ... The so-called "haplotype tag SNPs (htSNPs)" capture the majority of haplotype diversity within a region and thus represent the ... In addition, three haplotype-tagged SNPs (htSNPs) were selected to represent all haplotypes with frequencies larger than 2% in ...
https://bmcmedgenet.biomedcentral.com/articles/10.1186/1471-2350-6-14
*  Genotypes and haplotypes in the insulin-like growth factors, their receptors and binding proteins in relation to plasma...
In the haplotype analysis we found that the AC haplotype was associated with higher levels of IGFBP3 than the AG haplotype and ... None of the common haplotypes within the IGF1 receptor (IGF1R) haplotype or IGFALS haplotype were found significantly ... One haplotype in IGF2 was associated with the levels of both IGF1 and IGFBP3, while two haplotypes in the IGF2R gene were ... Two haplotype variants and two SNPs in IGF2R were associated with the levels of IGF1. Both variants of the IGFBP3 haplotype and ...
https://bmcmedgenomics.biomedcentral.com/articles/10.1186/1755-8794-3-9
*  A Bayesian model for estimating with-in host P. falciparum haplotype frequencies | Malaria Journal | Full Text
We have developed a Bayesian model for estimating haplotype frequencies. The model estimates haplotype frequencies based on ... and calculates the likelihood of the data given the current estimate of the haplotype frequencies. For each haplotype the model ... We present results of the application of our model to estimate haplotype frequencies for a set of historic data from Africa in ... For each sample the model returns a distribution, over the possible haplotype compositions with which it is compatible. The ...
https://0-malariajournal-biomedcentral-com.brum.beds.ac.uk/articles/10.1186/1475-2875-11-S1-P36
*  Haplotype analyses in wheat for complex traits: Tracking the chromosome 3B and 7B regions associated with late maturity alpha...
Haplotype analyses in wheat for complex traits: Tracking the chromosome 3B and 7B regions associated with late maturity alpha ... Haplotype analyses in wheat for complex traits: Tracking the chromosome 3B and 7B regions associated with late maturity alpha ... In this haplotyping study focussing on two significant chromosomal regions, markers and combinations of markers were ... McNeil, M. D., Diepeveen, D., Wilson, R., Barclay, I., McLean, R., Chalhoub, B. and Appels, R. (2009) Haplotype analyses in ...
https://espace.library.uq.edu.au/view/UQ:180896
*  HLA-DRB and HLA-DQB Allele and Haplotype Frequencies in Iranian Patients with Recurrent Aphthous Stomatitis
In order to evaluate the association of HLA-DR and DQ alleles and haplotypes, 54 patients with RAS and 100 unrelated healthy ... RAS appears to be associated with some human leukocyte antigen (HLA) class II alleles and haplotypes. This study attempts to ... However, DRB*07:01/DQB1*03:02 haplotype was found to be significantly frequent in patients than controls. In respect of HLA ... The DRB*04/DQB1*03:01 and DRB*01:01/DQB1*02:01 haplotypes were significantly distributed in healthy subjects compared with ...
http://rrc.tums.ac.ir/publication/view/id/436?lang=en
*  "Efficient mining of haplotype patterns for linkage disequilibrium mapp" by Lin L., Wong L. et al.
Linkage disequilibrium mapping is the process of finding disease gene locations through comparisons of haplotype frequencies ... and Haplotype Pattern Mining (HPM). Experimental results show that for a substantial class of problems, our method has good ... LinkageTracker does not require any population ancestry information about the disease and the genealogy of the haplotypes. ... Lin L., Wong L., Tze-Yun LEONG, and Lai P.. Efficient mining of haplotype patterns for linkage disequilibrium mapping. (2010). ...
http://ink.library.smu.edu.sg/sis_research/3016/
*  hla.demo: HLA Loci and Serologic Response to Measles Vaccination in haplo.stats: Statistical Analysis of Haplotypes with Traits...
plot.haplo.score: Plot Haplotype Frequencies versus Haplotype Score Statistics. *setupGeno: Create a group of locus objects ... haplo.em: EM Computation of Haplotype Probabilities, with Progressive.... *haplo.glm: GLM Regression of Trait on Ambiguous ... In haplo.stats: Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous Description Usage ... "Score tests for association of traits with haplotypes when linkage phase is ambiguous." Amer J Hum Genet. 70 (2002): 425-434. ...
https://rdrr.io/cran/haplo.stats/man/hla.demo.html
*  evolution - What are haplotype blocks and what is the effect of hybridization on these? - Biology Stack Exchange
In this PDF, there is a quick definition of haplotype blocks.. A haplotype block is a set of closely linked alleles/markers on ... Just as a reminder a haplotype is: "The set of alleles found on a single sequence is referred to as a haplotype." (Hahn, M. W. ... What are haplotypes blocks precisely and compared to LD? How to estimate haplotypes blocks? ... haplotype blocks: sizable regions over which there is little evidence for historical recombination and within which only a few ...
https://biology.stackexchange.com/questions/80923/what-are-haplotype-blocks-and-what-is-the-effect-of-hybridization-on-these
*  Population Genetic Analysis of Haplotypes Based on 17 Short Tandem Repeat Loci on Y Chromosome in Population Sample from...
Results A total of 207 haplotypes were recorded, 197 of which were unique (90%). Haplotype diversity was 0.9993, with the most ... Y-chromosome SNP haplotypes suggest evidence of gene flow among caste, tribe, and the migrant Siddi populations of Andhra ... The haplotype frequencies were determined by direct counting and analyzed using Arlequin 3.1 and analysis of molecular variance ... Aim To analyze the haplotype of the Ezhava population of Kerala, south India, using 8 short tandem repeat (STR) loci on the Y ...
http://pdc-connection.ebscohost.com/c/articles/52291709/population-genetic-analysis-haplotypes-based-17-short-tandem-repeat-loci-y-chromosome-population-sample-from-eastern-croatia
*  Altered Nucleosome Positions at Transcription Start Sites in Maize Haplotypes and Mutants of Putative Chromatin Remodelers |...
Altered Nucleosome Positions at Transcription Start Sites in Maize Haplotypes and Mutants of Putative Chromatin Remodelers. 10 ... Stroud, L. K. (2017). Altered Nucleosome Positions at Transcription Start Sites in Maize Haplotypes and Mutants of Putative ... Altered Nucleosome Positions at Transcription Start Sites in Maize Haplotypes and Mutants of Putative Chromatin Remodelers. ... chromatin remodelers in different maize haplotypes suggest a role for differentially expressed chromatin proteins in haplotype- ...
http://diginole.lib.fsu.edu/islandora/object/fsu%3A552339
*  Genetic dissection of the human leukocyte antigen region by use of haplotypes of Tasmanians with multiple sclerosis. - Nuffield...
In order to address this issue, we generated haplotypes spanning 14.754 Mb (5 cM) across the entire HLA region. The haplotypes ... We propose that the analysis of haplotypes, by use of the types of approaches outlined in the present article, should make it ... Association to the DRB1*1501-DQB1*0602 haplotype was replicated. In addition, we found that the class I/extended class I region ... Log-linear modeling analysis of constituent haplotypes that represent genomic regions containing class I (MOGCA-D6S265), class ...
https://www.wrh.ox.ac.uk/publications/661290
*  Gene polymorphisms of novel immunotolerant molecule BTLA: distribution of alleles, genotypes and haplotypes in Polish Caucasian...
gene polymorphism B lymphocyte T lymphocyte interleukin T helper cell allele distribution genotype haplotype Polish Caucasian ... Gene polymorphisms of novel immunotolerant molecule BTLA: distribution of alleles, genotypes and haplotypes in Polish Caucasian ...
http://agro.icm.edu.pl/agro/element/bwmeta1.element.agro-0638aecc-d17c-4b32-be09-98f8aa1e2418
*  Comparison of two Neolithic mtDNA haplotypes from a Czech excavation site with the results of mitochondrial DNA studies on...
The aim of the present study was to compare the mtDNA haplotypes (haplogroups H and W) obtained from 2 young females buried ... The aim of the present study was to compare the mtDNA haplotypes (haplogroups H and W) obtained from 2 young females buried ... Home/Journal Articles/Comparison of two Neolithic mtDNA haplotypes from a Czech excavation site with the results of ... The aim of the present study was to compare the mtDNA haplotypes (haplogroups H and W) obtained from 2 young females buried ...
https://haplogroup.org/sources/comparison-of-two-neolithic-mtdna-haplotypes-from-a-czech-excavation-site-with-the-results-of-mitochondrial-dna-studies-on-european-neolithic-and-mesolithic-individuals/
*  Protective role of Mannose binding Lectin (MBL2) promoter haplotypes on TB infection in South Indian HIV-1 patients | BMC...
MBL promoter haplotypes of -550 H/L and -221Y/X associated with high, medium and low (HY, LY and LX) secretion was assessed by ... The Promoter haplotype (LY/LX) associated with deficient MBL levels conferred a protective role to TB in our study population ... In this study, we could observe MBL2 promoter haplotypes with low MBL secretion may play a protective role to intracellular ... Protective role of Mannose binding Lectin (MBL2) promoter haplotypes on TB infection in South Indian HIV-1 patients. ...
https://bmcinfectdis.biomedcentral.com.preview-live.oscarjournals.springer.com/articles/10.1186/1471-2334-14-S3-P37
*  Combined Blood Stem Cell and Kidney Transplant of One Haplotype Match Living Donor Pairs. | Stanford Health Care
Total Lymphoid Irradiation, Anti-Thymocyte Globulin and Purified Donor CD34+ and T-cell Transfusion in HLA Haplotype Match ... Combined Blood Stem Cell and Kidney Transplant of One Haplotype Match Living Donor Pairs. ... Combined Blood Stem Cell and Kidney Transplant of One Haplotype Match Living Donor Pairs. ... Stanford University Medical Center who have a one haplotype match donor. ...
https://stanfordhealthcare.org/trials/c/NCT01165762.html
*  Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel. - Ethox Centre
We use this method to create a new 1000 GP haplotype reference set for use by the human genetic community. Using a set of ... First the SNP array data are phased to build a backbone (or 'scaffold') of haplotypes across each chromosome. We then phase the ... Here we develop a method to estimate haplotypes from low-coverage sequencing data that can take advantage of single-nucleotide ... validation genotypes at SNP and bi-allelic indels we show that these haplotypes have lower genotype discordance and improved ...
https://www.ethox.ox.ac.uk/publications/471687
*  Munin: Genotypes and haplotypes in the insulin-like growth factors, their receptors and binding proteins in relation to plasma...
Genotypes and haplotypes in the insulin-like growth factors, their receptors and binding proteins in relation to plasma ...
https://munin.uit.no/handle/10037/3046
*  Rapid increase of Plasmodium falciparum dhfr/dhps resistant haplotypes, after the adoption of sulphadoxine-pyrimethamine as...
The high frequency of quintuple Pfdhfr/Pfdhps haplotypes found here as early as 2002 most likely cause ideal conditions for the ... Conversely, the combined Pfdhfr/Pfdhps quintuple mutant haplotype increased from 8% to 26% (P = 0.005). The frequency of the ... The frequency of the SP-resistance associated Pfdhps double mutant (SGEAA) haplotype increased significantly from 14% to 35% (P ... related haplotypes in Pfdhfr, Pfdhps and Pfcrt based on results obtained by nested PCR followed by sequence-specific ...
https://0-malariajournal-biomedcentral-com.brum.beds.ac.uk/articles/10.1186/1475-2875-7-115
*  Analysis of Plasmodium vivax Apical Membrane Antigen-1 (PvAMA-1) Haplotypes among Iranian Isolates - International Journal of...
The scattering plot haplotypes by age showed an increasing incidence rate with age during childhood whereas incidence was the ... Keywords: Apical membrane antigen-1 (AMA-1), DNA sequencing, genetic polymorphism, Haplotype, Malaria transmission, Plasmodium ... Analysis of Plasmodium vivax Apical Membrane Antigen-1 (PvAMA-1) Haplotypes among Iranian Isolates ... Haplotypes among Iranian Isolates. Int J Mol Cell Med. 2017; 6 (4) URL: http://ijmcmed.org/article-1-735-en.html ...
http://ijmcmed.org/browse.php?a_id=735&sid=1&slc_lang=en&ftxt=0
*  CTLA-4 Gene Haplotypes and the Risk of Chronic Hepatitis C Infection; a Case Control Study - Reports of Biochemistry and...
Sepahi S, Pasdar A, Gerayli S, Rostami S, Gholoobi A, Meshkat Z. CTLA-4 Gene Haplotypes and the Risk of Chronic Hepatitis C ... CTLA-4 Gene Haplotypes and the Risk of Chronic Hepatitis C Infection; a Case Control Study ... Conclusions: Our results indicated that polymorphisms in CTLA-4 and certain haplotypes may affect the risk of HCV infection in ... The GCAT haplotype was also more prevalent in controls than in patients (adjusted P = 0.01; OR = 0.40, 95% CI = 0.20-0.81). ...
http://rbmb.net/browse.php?a_id=145&sid=1&slc_lang=en
*  Gene duplications at the chemokine locus on mouse chromosome 4: multiple strain-specific haplotypes and the deletion of...
... multiple strain-specific haplotypes and the deletion of secondary lymphoid-organ chemokine and EBI-1 ligand chemokine genes in ... and four ELC genes or pseudogenes are present in some haplotypes. All haplotypes share a duplication that includes two SLC ... Gene duplications at the chemokine locus on mouse chromosome 4: multiple strain-specific haplotypes and the deletion of ... we find that commonly used inbred mouse strains demonstrate at least three different haplotypes. Polymorphism at this locus is ...
https://scholars.duke.edu/display/pub643245
*  HLA DR-DQ haplotypes and genotypes in patients with systemic lupus erythematosus with co-existing Sjogren's syndrome, systemic...
... had revealed an increased frequency of the DRB1*0301-DQA1*0501-DQB1*0201 haplotype, as well as of the extended haplotype DRB1* ... HLA DR-DQ haplotypes and genotypes in patients with systemic lupus erythematosus with co-existing Sjogren's syndrome, systemic ... In contrast, SLE-noSS patients had an increased estimated frequency of the DRB1*1501-DQA1*0102-DQB1*0602 haplotype. In SLE-SS ... In the present study, we conducted a thorough evaluation of the genotype and haplotype profiles in well-defined subgroups of ...
https://arthritis-research.biomedcentral.com/articles/10.1186/ar1621