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*  Survival and mitochondrial function in septic patients according to mitochondrial DNA haplogroup | Critical Care | Full Text
In the analysis of the JT haplotype versus other haplogroups, we found higher COXa/CSa and COXq/CSa ratios at days 1, 4 and 8 ...
https://ccforum.biomedcentral.com/articles/10.1186/cc11150
*  "Efficient mining of haplotype patterns for linkage disequilibrium mapp" by Lin L., Wong L. et al.
Linkage disequilibrium mapping is the process of finding disease gene locations through comparisons of haplotype frequencies ... and Haplotype Pattern Mining (HPM). Experimental results show that for a substantial class of problems, our method has good ... LinkageTracker does not require any population ancestry information about the disease and the genealogy of the haplotypes. ... Lin L., Wong L., Tze-Yun LEONG, and Lai P.. Efficient mining of haplotype patterns for linkage disequilibrium mapping. (2010). ...
http://ink.library.smu.edu.sg/sis_research/3016/
*  Dienekes' Anthropology Blog: Mitochondrial DNA Haplogroups and Lipoatrophy After Antiretroviral Therapy.
Why Y-STR haplotype clusters are not clades. Racial Type of the Ancient Hellenes. Anthropological Evidence and the Fallmerayer ...
http://dienekes.blogspot.com/2009/04/mitochondrial-dna-haplogroups-and.html?m=0
*  Mitochondrial DNA haplogroups and ageing mechanisms in osteoarthritis | Annals of the Rheumatic Diseases
The mtDNA haplotypes T, J and the JT cluster, on the other hand, are significantly associated in populations from the USA, the ... 9-11 whereas evidence of association of the T haplotype with lower disease risk was found in a small UK cohort9 (table 1). ... two studies in samples from the UK have failed to find an association with the J haplotype, ...
http://ard.bmj.com/content/early/2017/01/09/annrheumdis-2016-210783
*  Genetic Relationships of Cattle Breeds Assessed by PCR-RFLP of the Bovine Mitochondrial DNA D-loop Region | Korea Science
The genotypes, number of haplotype, effective number of haplotype, and degree of heterozygosity were analyzed. Based on all the ... The Complete Mitochondrial DNA Sequence of the Domestic Sheep (Ovis aries) and Comparison with the OtherMajor Ovine Haplotype. ... PCR-RFLP data, different haplotypes were constructed and analyzed for calculating genetic distances between these breeds using ...
http://www.koreascience.or.kr/article/ArticleFullRecord.jsp?cn=E1DMBP_2005_v18n10_1368
*  Hitchhiker's Guide to the Galaxy on Linkage disequilibrium
and the estimated frequency of haplotype xy is. e. [. h. f. x. y. ]. =. (. D. /. N. ). (. B. /. N. ). {\displaystyle e[hf_{xy ... of the haplotypes in the offspring have not recombined, and are thus copies of a random haplotype in their parents. A fraction ... estimated frequency of haplotype i. j. =. g. f. i. g. f. j. =. 0.0215. {\displaystyle hf_{ij}={\text{estimated frequency of ... the frequency of the haplotype A. 1. B. 1. {\displaystyle A_{1}B_{1}}. , becomes ...
http://hitchhikersgui.de/Linkage_disequilibrium
*  Mitochondrial DNA Polymorphism, Maternal Lineage and Correlations with Postnatal Growth of Japanese Black Beef Cattle to...
Mitochondrial DNA haplotypes from the displacement-loop (D-loop) region (436 bp) were genotyped and sequenced in Japanese Black ... However, correlations between mitochondrial DNA haplotypes and postnatal growth traits were very low, mostly negative and non- ... Results of the phylogenetic analysis revealed 17 maternal lineages and four mitochondrial DNA haplotypes. There were strong, ... Correlation coefficients between mitochondrial DNA haplotypes, maternal lineage, birth weight, preweaning average daily gain, ...
https://eprints.utas.edu.au/579/
*  Endometrial Phase or Endometrial Cancer Biomarkers - Patent application
... involving haplotyping, or involving detection of dna methylation gene expression Publication date: 2013-04-25 Patent ... involving haplotyping, or involving detection of DNA methylation gene expression ... involving haplotyping, or involving detection of DNA methylation gene expression ...
http://www.patentsencyclopedia.com/app/20130102004
*  Mitochondrial DNA - Wikipedia
... "mtDNA Segregation in Heteroplasmic Tissues Is Common In Vivo and Modulated by Haplotype Differences and Developmental Stage". ...
https://en.wikipedia.org/wiki/Mitochondrial_DNA
*  Mutation and Haplotypes
... [Internet]. Salt Lake City (UT): Genetic Science Learning Center; 2016 [cited 2018 Dec 7] Available ... Mutation and Haplotypes.' Learn.Genetics. March 1, 2016. Accessed December 7, 2018. https://learn.genetics.utah.edu/content/ ... 2016, March 1) Mutation and Haplotypes. Retrieved December 07, 2018, from https://learn.genetics.utah.edu/content/basics/ ...
https://learn.genetics.utah.edu/content/basics/haplotype
*  MHC Haplotype Project
... The MHC Haplotype Project was conducted between 2000 and 2006 at the Sanger ... MHC Haplotype Project Data. The data from the MHC Haplotype Project are available in .txt file format file for viewing in the ... Haplotype HLA-A HLA-B HLA-C HLA-DRB1 HLA-DQB1 HLA-DPB1 Links:. Vega UCSC. GRC ... The data are colour-coded by haplotype and will initially be displayed showing 1Mb in the centre of the MHC. You are then free ...
http://www.ucl.ac.uk/cancer/research/department-cancer-biology/medical-genomics-group/past-projects/mhc-haplotype-project
*  Haplotype - Wikipedia
is the (relative) haplotype frequency of each haplotype in the sample and N. {\displaystyle N}. is the sample size. Haplotype ... Haplotype diversity is a measure of the uniqueness of a particular haplotype in a given population. The haplotype diversity (H ... Given the genotypes for a number of individuals, the haplotypes can be inferred by haplotype resolution or haplotype phasing ... HelixTree - Haplotype analysis software - Haplotype Trend Regression (HTR), haplotypic association tests, and haplotype ...
https://en.m.wikipedia.org/wiki/Haplotype
*  Haplotype - SNPedia
Haplotype: A specific combination of SNPs all occuring together on the same chromosome (i.e. all occuring on the chromosome ... Haplotypes are important for example because many of the SNP's found by genome-wide association studies aren't the true cause ... Because haplotypes are highly likely to be preserved in populations, there are several algorithms for attempting to conduct ... Next Gen Sequencing can thus provide not only perfectly phased genome, but also a haplotype map which can be used to impute ...
https://snpedia.com/index.php/Haplotype
*  COX-2 gene promoter haplotypes and prostate cancer risk. - PubMed - NCBI
Haplotype GGCC conferred increased risk in the African American and Nigerian populations. Conversely, haplotype AGGG exhibited ... COX-2 gene promoter haplotypes and prostate cancer risk.. Panguluri RC1, Long LO, Chen W, Wang S, Coulibaly A, Ukoli F, Jackson ... Haplotype analyses revealed modest effects on susceptibility to prostate cancer across populations. ...
https://www.ncbi.nlm.nih.gov/pubmed/14754878
*  Dienekes' Anthropology Blog: Rare haplotypes in mtDNA
A combination of haplotype H and 73G in HVS-II, rare in extant populations (0.5-3%), has been found at a frequency of 20% in ... Why Y-STR haplotype clusters are not clades. Racial Type of the Ancient Hellenes. Anthropological Evidence and the Fallmerayer ... Rare haplotypes in mtDNA: applications in the analysis of biosocial aspects of past human populations.. Izagirre N, Alzualde A ...
http://dienekes.blogspot.com/2006/02/rare-haplotypes-in-mtdna.html
*  Blocks of Limited Haplotype Diversity
... and with low haplotype diversity, separated from other blocks by steps of low LD with high haplotype diversity ... A haplotype block is a DNA sequence containing polymorphisms in strong linkage disequilibrium (LD) ... and with low haplotype diversity, separated from other blocks by steps of low LD with high haplotype diversity. Haplotype ... Haplotype diversity measured by the effective number of haplotypes is said to be low if smaller than the number of ...
http://www.els.net/WileyCDA/ElsArticle/refId-a0006251.html
*  Genaissance, AstraZeneca Align To Apply Haplotypes To Disease | BioWorld
BioWorld Online is the news service of record for the biotechnology industry and is updated every business morning. BioWorld Online will keep you up to date on all of the industry's business, science and regulatory news -- mergers and collaborations, FDA hearings and results, breakthroughs in research and much more.
http://www.bioworld.com/content/genaissance-astrazeneca-align-apply-haplotypes-disease
*  Haplotype Map of Sickle Cell Anemia in Tunisia
... Imen Moumni,1 Maha Ben Mustapha,1 Sarra Sassi,1 Amine Zorai,1 Ikbel Ben Mansour ... Imen Moumni, Maha Ben Mustapha, Sarra Sassi, et al., "Haplotype Map of Sickle Cell Anemia in Tunisia," Disease Markers, vol. ...
https://www.hindawi.com/journals/dm/2014/938301/cta/
*  Creating a Single Haplotype Human Genome Assembly.
... T. Graves1, W. Warren1, B. Fulton1, K. Meltz Steinberg1, R. Agarwala2, V. ... In order to discriminate between repeat copy and allelic copies, the sequence from a single haplotype across these regions is ...
http://www.ashg.org/2013meeting/abstracts/fulltext/f130122572.htm
*  Nomenclature of mitochondrial DNA haplotypes for Oncorhynchus mykiss
A comprehensive list of reported mitochrondrial DNA haplotypes for Oncorhynchus mykiss generated using the S-Phe/P2 primer set ... A comprehensive list of reported mitochrondrial DNA haplotypes for Oncorhynchus mykiss generated using the S-Phe/P2 primer set ... Nomenclature of mitochondrial DNA haplotypes for Oncorhynchus mykiss. Series title. Transactions of the American Fisheries ... Nomenclature of mitochondrial DNA haplotypes for Oncorhynchus mykiss. Transactions of the American Fisheries Society ...
https://pubs.er.usgs.gov/publication/70027856
*  A Note on Efficient Computation of Haplotypes via Perfect Phylogeny | UMIACS
A Note on Efficient Computation of Haplotypes via Perfect Phylogeny. Title. A Note on Efficient Computation of Haplotypes via ... A Haplotype Map project has been announced by NIH to identify and characterize populations in terms of these haplotypes. ... For the second problem of computing a PPH solution that minimizes the number of distinct haplotypes, we show that the problem ... The problem of inferring haplotype phase from a population of genotypes has received a lot of attention recently. This is ...
https://www.umiacs.umd.edu/publications/note-efficient-computation-haplotypes-perfect-phylogeny
*  A First-Generation Haplotype Map of Maize | Science
A First-Generation Haplotype Map of Maize. By Michael A. Gore, Jer-Ming Chia, Robert J. Elshire, Qi Sun, Elhan S. Ersoz, Bonnie ... A First-Generation Haplotype Map of Maize. By Michael A. Gore, Jer-Ming Chia, Robert J. Elshire, Qi Sun, Elhan S. Ersoz, Bonnie ... S6) (22). However, we also found evidence of longer haplotypes extending for thousands and millions of bases. Association ... among 27 diverse maize inbred lines and discovered that the genome was characterized by highly divergent haplotypes and showed ...
http://science.sciencemag.org/content/326/5956/1115?ijkey=6e5c7fd511ec920a55b9cff4ff4a42e3a9e991d5&keytype2=tf_ipsecsha
*  Patent US20060008799 - Rapid haplotyping by single molecule detection - Google Patents
The present invention includes a method for rapid haplotyping a DNA or RNA segment. Two or more target sites on a segment of ... presence or absence of each luminescent hybridization probe on each DNA or RNA segment is detected to determine the haplotype ... a) Targets of haplotyping are all sorts of DNA and RNA variations that are necessary to define a haplotype. They include any ... The haplotype deduced from a genotype is typically done in bulk as follows (inferred haplotypes). The region of interest is PCR ...
http://www.google.com/patents/US20060008799
*  The Evolution and Diversification of S-Locus Haplotypes in the Brassicaceae Family | Genetics
... sativus haplotypes were found only among the class Ia haplotypes. While all A. lyrata SRK haplotypes were well separated from ... Also, the presence of a 9-bp deletion in exon 7 of all SRK class II haplotypes and in only one of the class I haplotypes ( ... For SCR, only class II haplotypes could be amplified, and six class II haplotypes were used in this study. DNA sequences from ... 1999b), clustered with A. lyrata haplotypes but separately from the Brassica haplotypes. From this observation, Paetsch et al. ...
http://www.genetics.org/content/181/3/977
*  Probabilistic Multilocus Haplotype Reconstruction in Outcrossing Tetraploids
... Author(s). Zheng, Chaozhi; Voorrips, R.E.; Jansen ... We divide haplotype reconstruction into two stages: parental linkage phasing for reconstructing the most probable parental ... this paper, we build a novel and integrated statistical framework for multilocus haplotype reconstruction in a full-sib ... mapping in outcrossing polyploids, where haplotype reconstruction by identifying the parental origins of marker alleles is ...
http://library.wur.nl/WebQuery/wurpubs/504819