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*  Packing nanomechanics of viral genomes | SpringerLink
... connect the wealth of existing osmotic pressure data for DNA in the bulk with the DNA encapsidation curves within small viral ...
https://link.springer.com/article/10.1140%2Fepje%2Fi2008-10330-7
*  Complete Genome Viral Phylogenies Suggests the Concerted Evolution of Regulatory Cores and Accessory Satellites
A single viral genome can be thought of as a mutualistic network, with the core genes acting as an effective host and the ... For all four viral families we constructed DNA-dependent DNA polymerase-based (DdDp) phylogenies and in addition, whole genome ... The congruence of the genome and polymerase trees suggests that a large set of viral genes, including polymerase, derive from a ... To address the concerted evolution of viral genes, we compared genomic evolution across four distinct, extant viral families. ...
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0003500
*  Viral Genome Methods by Kenneth W. Adolph | 9780849344121 | Booktopia
Buy a discounted Paperback of Viral Genome Methods online from Australia's leading online bookstore. ... Booktopia has Viral Genome Methods by Kenneth W. Adolph. ... Viral Genome Methods is a practical guide to the newest ... Molecular biology and genetics techniques now dominate viral research in attempts to cure diseases such as AIDS. ... Recognized authorities and pioneers in viral research pass on their expertise to you. ...
https://www.booktopia.com.au/viral-genome-methods-kenneth-w-adolph/prod9780849344121.html
*  Viral Genome Packaging: Genetics, Structure, and Mechanism | Carlos E. Catalano | Springer
The chapters of this book concentrate on the biochemistry, enzymology and structural aspects of the genome packaging machinery ... Viral Genome Packaging focuses on the process of genome 'packaging' within a pre-formed viral procapsid. ... Viral Genome Packaging focuses on the process of genome "packaging" within a pre-formed viral procapsid. The chapters of this ... Viral Genome Packaging: Genetics, Structure, and Mechanism. Editors. * Carlos E. Catalano Series Title. Molecular Biology ...
https://www.springer.com/us/book/9780306482274?wt_mc=
*  Viral Genome Junk Is Bunk | The Institute for Creation Research
These alleged ancient viral sequences are thought to have entered the genome via viral infection, initially served no purpose ... over the past 100 million years of mammalian evolution-with their viral-like DNA proliferating across creatures' genomes.1 ... the great ongoing myths of evolution is that the genomes of animals and humans are littered with vast amounts of genomic viral ... So, where do viruses come from that essentially share the same sequences as those found in their host genomes? Perhaps the ...
https://www.icr.org/article/8661
*  Viral Genome Junk Hits the Trash | The Institute for Creation Research
Viral Genome Junk Hits the Trash by Jeffrey P. Tomkins, Ph.D. * Evidence for Creation › Evidence from Science › Evidence from ... Viral Genome Junk Is Bunk. Acts & Facts. 44 (4): 12. *Dr. Tomkins is Director of Life Sciences at the Institute for Creation ... and that external viral genomes were derived from human and animal ERVs only after God cursed the creation for man's sin. This ... Genome Biology and Evolution. 7 (4): 1082-1097.. * Chuong, E. B., N. C. Elde, and C. Feschotte. 2016. Regulatory evolution of ...
http://www.icr.org/article/9253/282/
*  Recombination into the Viral Genome - OpenWetWare
Now that we have created synthetic Gene 68, we need to combine that synthetic gene with the rest of the phage genome. We will ... Today we will introduce the native phage genome and synthetic gene 68 into the bacterial cells and then plate those cells onto ... If it is infectious, the semi-synthetic phage genome will burst the initial host bacterial cell, causing it to rupture and ... The method that we will use to introduce the phage genome and synthetic gene into bacteria is called electroporation; rather ...
https://openwetware.org/wiki/Recombination_into_the_Viral_Genome
*  Sequencing viral genomes from a single isolated plaque. | J. Craig Venter Institute
... genome next-generation sequencing of any cultivable virus without the need for large-scale production of viral stocks or viral ... Whole genome sequencing of viruses and bacteriophages is often hindered because of the need for large quantities of genomic ...
https://www.jcvi.org/publications/sequencing-viral-genomes-single-isolated-plaque
*  Multiplex Degenerate Primer Design for Targeted Whole Genome Amplification of Many Viral Genomes
... Shea N. Gardner,1 Crystal J. ... M. K. Borucki, J. E. Allen, H. Chen-Harris et al., "The role of viral population diversity in adaptation of bovine coronavirus ... "Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing," Virology ...
https://www.hindawi.com/journals/abi/2014/101894/ref/
*  Inhibition of JCPyV infection mediated by targeted viral genome editing using CRISPR/Cas9
"Inhibition of JCPyV infection mediated by targeted viral genome editing using CRISPR/Cas9." Scientific Reports 6 (1): 36921. ... Inhibition of JCPyV infection mediated by targeted viral genome editing using CRISPR/Cas9. ... We utilized CRISPR/Cas9 to target the noncoding control region and the late gene open reading frame of the JCPyV genome. We ... is a genome editing tool capable of introducing sequence specific breaks in double stranded DNA. Here we show that the CRISPR/ ...
https://dash.harvard.edu/handle/1/29626029
*  Max-Planck-Institut für Informatik: Analysis of Viral Genomes Using Next-generation Sequencing
News Spotlights Bioinformatics Analysis of Viral Genomes Using Next-generation Sequencing. Analysis of Viral Genomes Using Next ... Standardizing viral sequence analysis with Virana The situation is further complicated by the fact that viral genomes differ ... Analysis of Viral Genomes Using Next-generation Sequencing. Research on viral infections is heavily dependent on available ... used to analyze the complex interaction of the hepatitis B virus with the host's immune system on the basis of the viral genome ...
https://www.mpi-inf.mpg.de/news/spotlights/bioinformatics/analysis-of-viral-genomes-using-next-generation-sequencing/
*  Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life. - PubMed - NCBI
Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life.. Prangishvili D1, Garrett RA, ... In contrast, initial analysis of the crenarchaeal viral genomes revealed no relationships with bacteriophages and, generally, ... In addition, each of the crenarchaeal viruses encodes several proteins with prokaryotic but not viral homologs, some of which, ... In accord with this distinction, the sequenced genomes of euryarchaeal viruses encode many proteins homologous to bacteriophage ...
https://www.ncbi.nlm.nih.gov/pubmed/16503363?dopt=Abstract
*  Early growth response-1 facilitates enterovirus 71 replication by direct binding to the viral genome RNA. | Sigma-Aldrich
Early growth response-1 facilitates enterovirus 71 replication by direct binding to the viral genome RNA.. [Yu Song, Xin Cheng ... Our results reveal an important new role of EGR1 in viral infection, provide new insight into the novel mechanism underlying ... Unfortunately, there is currently no effective treatment for EV71 infection due to the lack of understanding of viral ... Moreover, EGR1 protein co-localizes with EV71 RNA in the cytoplasm of infected cells to facilitate viral replication. ...
https://www.sigmaaldrich.com/catalog/papers/25724735
*  ChIP-Seq for viral genomes
I align to both the viral and host genome to avoid any mis alignments.. I then use only the viral aligned reads for peak ... The viral genome exists as episomes in the cell. It is not integrated in to the genome. ... almost all of them with their default parameters are optimized for large genomes with widely spaced genes unlike a viral genome ... Using the host+viral leads to a bunch of false positives from the host which look nothing like peaks on the genome browser and ...
https://www.biostars.org/p/348105/
*  NOPR: 1/f Correlations in viral genomes - A Fast-Fourier Transformation (FFT) study
1/f Correlations in viral genomes - A Fast-Fourier Transformation (FFT) study. ... This suggests the presence of long-range correlations in their genomes. The presence of 1/f noise in a given frequency interval ... We have studied the presence of long-range correlations in the complete genomes of ten different dsDNA viruses and ... of their genomes. Linear regression analysis was done for the power-law region of these organisms and the slope values obtained ...
http://nopr.niscair.res.in/handle/123456789/3272
*  Assessing parallel gene histories in viral genomes | BMC Evolutionary Biology | Full Text
... largely dissimilar in genome, evolutionary distance and biology. Our method pinpoints viral genes with common evolutionary ... Indeed, genes within a genome have not all followed the same evolutionary path due to events such as incomplete lineage sorting ... In the case of papillomaviruses, gene clusters match well our knowledge on viral biology and life cycle, illustrating the ... For the less known TuMV, our results trigger new hypotheses about viral evolution and gene interaction. The approach here ...
https://bmcevolbiol.biomedcentral.com/articles/10.1186/s12862-016-0605-4
*  Pathogens | Free Full-Text | Presence of Viral Genome in Urine and Development of Hematuria and Pathological Changes in...
DENV genome was detected in 75% (15/20) of marmosets after primary DENV infection. No DENV genome was detected in urine samples ... Levels of DENV genome were determined in 228 urine samples from 20 primary DENV-inoculated marmosets and in 56 urine samples ... Presence of DENV genome in urine samples and pathological changes in kidneys were examined in the present study. ... In comparison to detection of viral genome in urine samples, DENV genome was detected on days 2-7 in serum samples (Table 2). ...
http://www.mdpi.com/2076-0817/2/2/357/htm
*  Viral genome changes and the impact of viral genome persistence in myocardium of patients with inflammatory cardiomyopathy
Material and methods We investigated the changes in viral presence and the impact of viral genome persistence in the myocardium ... Introduction Viral infections are considered the most frequent cause of myocarditis and dilated cardiomyopathy (DCM). ... Viral genome changes and the impact of viral genome persistence in myocardium of patients with inflammatory cardiomyopathy. ... Viral genome changes and the impact of viral genome persistence in myocardium of patients with inflammatory cardiomyopathy. ...
https://www.termedia.pl/Viral-genome-changes-and-the-impact-of-viral-genome-persistence-in-myocardium-of-patients-with-inflammatory-cardiomyopathy,19,33992,0,1.html
*  Horizontal transfer of a non-autonomous Helitron among insect and viral genomes | BMC Genomics | Full Text
... but these viral genome segments also exist as free circular dsDNAs that become enclosed into transmissible viral particles [47, ... In conjunction with prior research outlined above, the comparative genomic data in this study indicate that viral genomes ... Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes. Genome Biol. 2008;9:R39.View ArticlePubMed ... Specifically, the genomes of PDVs are segmented and integrated into the genomes of their primary hosts (parasitoid wasps; ...
https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-1318-6
*  ASMscience | Viral Genomes: a Simulation of Viral Protein and Nucleic Acid Syntheses
... simulating viral uncoating in the host cell) and decide how host and/or viral enzymes will convert the genome into viral ... an abbreviated viral genome). The students break open the cups ( ... Templates for photocopying the genomes, sample worksheets, and ... proteins and new genomes. The sequences provided describe a double-stranded DNA virus, single-stranded RNA viruses (+ or - ... a Simulation of Viral Protein and Nucleic Acid Syntheses Viral Genomes: a Simulation of Viral Protein and Nucleic Acid ...
http://www.asmscience.org/content/education/curriculum/curriculum.74
*  Characterization of the Purified Recombinant Adenovirus for Viral Genome Structure by Restriction Enzyme Digestions
... (Protocol ... Protocol 4: Characterization of the Purified Recombinant Adenovirus for Viral Genome Structure by Restriction Enzyme Digestions ... Protocol 4: Whole Genome: Manual Library Preparation *Protocol 5: Whole Genome: Automated, Nonindexed Library Preparation * ... Panel: Introducing Genes into Mammalian Cells: Viral Vectors1209 *Panel: Factors to Consider When Choosing a Viral Vector1211 * ...
http://molecularcloning.com/index.php?prt=181
*  Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome | BMC...
GATU greatly simplifies the initial stages of genome annotation by using a closely related genome as a reference. It is not ... GATU transfers annotations from a reference genome to a closely related target genome, while still giving the user final ... we found that researchers were unnecessarily spending time annotating viral genomes that were close relatives of already ... to transfer annotations from a previously annotated reference genome to a new target genome, thereby greatly reducing this ...
https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-7-150
*  Microbiology Society Journals | Molecular characterization of the plant virus genus Ourmiavirus and evidence of inter-kingdom...
We cloned and sequenced their RNA genomes. The sizes of the three genomic RNAs of OuMV, the type member of the genus, were 2814 ... The putative RdRps of ourmiaviruses are distantly related to known viral RdRps, with the closest similarity and phylogenetic ... f Molecular characterization of the plant virus genus Ourmiavirus and evidence of inter-kingdom reassortment of viral genome ... Molecular characterization of the plant virus genus Ourmiavirus and evidence of inter-kingdom reassortment of viral genome ...
http://jgv.microbiologyresearch.org/content/journal/jgv/10.1099/vir.0.013086-0