Sequence AlignmentGenome, BacterialGenomeMolecular Sequence DataSequence Analysis, DNASequence Analysis, ProteinSoftwarePhylogenyGenome, ViralAlgorithmsAmino Acid SequenceComputational BiologyBase SequenceEvolution, MolecularSequence Homology, Amino AcidGenomicsGenome, PlantGenome, HumanConserved SequenceProteinsDatabases, ProteinInternetGenome, MitochondrialSequence HomologyModels, MolecularUser-Computer InterfaceDatabases, GeneticGenome, ArchaealSequence Analysis, RNAGenome, FungalSequence AnalysisOpen Reading FramesSoftware ValidationSequence Homology, Nucleic AcidStructural Homology, ProteinModels, GeneticProtein Structure, TertiaryDatabases, Nucleic AcidComputer GraphicsDNA, BacterialChromosome MappingGenome SizeSyntenyMultigene FamilyProtein Structure, SecondaryComputing MethodologiesGenetic VariationSpecies SpecificityMarkov ChainsBacterial ProteinsCloning, MolecularComputer SimulationProtein ConformationDatabases, FactualBinding SitesGenome, ProtozoanGenome, ChloroplastCluster AnalysisGene OrderExpressed Sequence TagsGenome, InsectINDEL MutationMolecular Sequence AnnotationMutationModels, StatisticalLikelihood FunctionsInformation Storage and RetrievalBase CompositionWord ProcessingEscherichia coliConsensus SequenceReproducibility of ResultsAmino Acid MotifsNucleic Acid ConformationDatabase Management SystemsGenes, BacterialRecombination, GeneticPattern Recognition, AutomatedDNASoftware DesignRNAHigh-Throughput Nucleotide SequencingMutagenesis, Site-DirectedGene DuplicationGene Transfer, HorizontalProgramming LanguagesBiological EvolutionRepetitive Sequences, Nucleic AcidGene Expression ProfilingArchaeaPseudogenesPolymerase Chain ReactionGenome, HelminthDNA, IntergenicDNA PrimersDNA, ViralContig MappingDNA Transposable ElementsChromosomes, Artificial, BacterialOryza sativa