EmaxDB: Availability of a first draft genome sequence for the apicomplexan Eimeria maxima. - Oxford Neuroscience
The assembly of a draft genome sequence for E. maxima provides a resource for comparative studies with Eimeria and related ... EmaxDB: Availability of a first draft genome sequence for the apicomplexan Eimeria maxima. ... EmaxDB: Availability of a first draft genome sequence for the apicomplexan Eimeria maxima. ... The assembly of a draft genome sequence for E. maxima provides a resource for comparative studies with Eimeria and related ...https://www.neuroscience.ox.ac.uk/publications/322954
Genomic variation within Giardia intestinalis assemblage A isolates
Giardia, protozoa, parasite infection, diarrhea, genome sequencing, comparative genomics, genotyping, ASH, MLG National ... The genome of a non-human infecting, assemblage E isolate (Paper IV) was sequenced. The genomes of two freshly isolated human ... 37 proteinencoding genes, not found in the WB genome, were identified in the two AII genomes. The large gene families of ... The protozoan parasite Giardia intestinalis (syn. G. lamblia, G. duodenalis) is one of the most common causes of diarrheal ...http://uu.diva-portal.org/smash/record.jsf?pid=diva2:480627
A recently transferred cluster of bacterial genes in Trichomonas vaginalis - lateral gene transfer and the fate of acquired...
... of prokaryote origin was identified in the sequenced genome of the protozoan parasite Trichomonas vaginalis. Using a PCR based ... but the mechanisms of acquisition and fixation in eukaryotic genomes are still uncertain. A previously defined norm for LGTs in ...http://uu.diva-portal.org/smash/record.jsf?pid=diva2:736621
Protozoans amazing genome restructuration hability
... Perry Marshall, Evolution 2.0, page 85 Research at the University of ... Protozoans amazing genome restructuration hability Perry Marshall, Evolution 2.0, page 85. Research at the University of ... Linguistic analysis of the protozoan genome shows that only certain segments get cut and spliced, and apparently only certain ... Protozoans amazing genome restructuration hability on Sun Jan 01, 2017 4:31 pm. ...http://reasonandscience.catsboard.com/t2401-protozoans-amazing-genome-restructuration-hability
... and the only large service repository of parasitic protozoa in the world. Cultures are authenticated using morphological and ... Protozoa (Alphanumeric) Search protozoa alphanumerically. Protozoan Genome Sequencing Strains ATCC provides all the cultures ... Protozoan Culture Media ATCC offers a variety of protozoa culture media to support the growth of either xenic or axenic ... Protozoan Nucleic Acids ATCC offers pre-packaged nucleic acids from several parasitic protozoa strains in concentrations great ...http://atcc.org/en/Products/Cells_and_Microorganisms/Protozoa.aspx
Advances in omics-based methods to identify novel targets for malaria and other parasitic protozoan infections | Genome...
Studies mapping genome-wide essentiality in P. falciparum or performing transcriptional profiling of the host and parasite ... Advances in mapping the epigenomic regulation of the malaria parasite genome have also enabled the identification of key ... In addition, the examination of the host genome during infection has identified novel gene candidates associated with ... These approaches have also been extended to other protozoan pathogens, including Toxoplasma, Trypanosoma, and Leishmania spp., ...https://phgkb.cdc.gov/PHGKB/phgHome.action?action=forward&dbsource=cluster&id=32574
iNTRODB - an Integrated system for searching drug-target proteins from parasitic protozoa genomes. iNTRODB is an integrated ... The compound collection was systematically screened against protozoan parasites, T. b. rhodesiense, L. donovani, T. cruzi and P ... system for searching drug-target proteins from parasitic protozoa genomes that cause neglected tropical diseases, including ...https://www.dndi.org/diseases-projects/open-innovation/
Bar graph of chimeric read analysis. Different amounts | Open-i
DNA, Protozoan/chemistry*/genetics*. *Genome, Protozoan*. *Nucleic Acid Amplification Techniques/methods*. *Plasmodium ... Optimized whole-genome amplification strategy for extremely AT-biased template. Oyola SO, Manske M, Campino S, Claessens A, ... Optimized whole-genome amplification strategy for extremely AT-biased template. Oyola SO, Manske M, Campino S, Claessens A, ... Bottom Line: We present a strategy for whole-genome amplification (WGA) of low-yield samples from P. falciparum prior to short- ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC4263299_dsu02804&req=4
Conservation of large syntenic groups between the G str | Open-i
Genome Size/genetics. *Genome, Protozoan/genetics. *Genotyping Techniques. *Microsatellite Repeats/genetics. *Opossums ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC3646811_pone.0063738.g003&req=4
A randomized open study to assess the efficacy and tolerability of dihydroartemisinin-piperaquine for the treatment of...
Genome, Protozoan. en. dc.subject.mesh. Humans. en. dc.subject.mesh. Infant. en. ...http://fieldresearch.msf.org/msf/handle/10144/17743
Biology Forum | Biology-Online Dictionary, Blog & Forum
... protozoans, algae and fungi. Topics also relate to viruses, viroids, prions and more. Biological science forum online. ... Protozoan chosen for genome sequencing. 27 Apr 2007. Rating: 2.00. A protozoan that has been studied by a University of ... Prediction of the coding potential for stretches of DNA is crucial in gene calling and genome annotation, where it is used to ... Evolution of four gene families with patchy phylogenetic distributions: influx of genes into protist genomes. 1 Apr 2008 ...https://www.biology-online.org/kb/biology_articles/protistology.html
Dictyostelium discoideum - Wikipedia
This was the first free-living protozoan genome to be fully sequenced. D. discoideum consists of a 34-Mb haploid genome with a ... Tandem repeats of trinucleotides are very abundant in this genome; one class of the genome is clustered, leading researchers to ... Every genome sequenced plays an important role in identifying genes that have been gained or lost over time. Comparative ... The D. discoideum genome is noteworthy because its many encoded proteins are commonly found in fungi, plants, and animals. ...https://en.wikipedia.org/wiki/Dictyostelium_discoideum
JoVE | Peer Reviewed Scientific Video Journal - Methods and Protocols
An assessment on epitope prediction methods for protozoa genomes. Daniela M Resende, Antônio M Rezende, Nesley J D Oliveira, ... Lytic peptides have been shown to kill a variety of protozoan parasites (Mutwiri et al. 2000) and also protozoa in the gut of ... We also demonstrate that the same ligand coupled to a lytic peptide efficiently kills termite gut protozoa in vitro (protozoa ... Testing Protozoacidal Activity of Ligand-lytic Peptides Against Termite Gut Protozoa in vitro (Protozoa Culture) and in vivo ( ...https://www.jove.com/visualize/abstract/23170965/an-assessment-on-epitope-prediction-methods-for-protozoa-genomes
Research at the RBVI
Protozoan genomes: Plasmodium, Crithidia (24 - 35 megabase). *Vertebrate genomes: Red tailed boa, Northern Spotted Owl, Komodo ... Thus, de novo assembly of genomes usually entails an iterative approach in which an assembly is evaluated, parts of the data ... The genome projects represent a transformative achievement of our generation, revolutionizing the way we frame and pursue ... HIV has a small genome and therefore relies heavily on the host cellular machinery to replicate; HIV and human proteins act ...http://www.cgl.ucsf.edu/Research/index.html
Characterisation of a repetitive DNA sequence from the malaria parasite, Plasmodium falciparum. - Semantic Scholar
Repetitive elements in genomes of parasitic protozoa.. *Bill Wickstead, Klaus Ersfeld, Keith Gull ... Anatomy and evolution of telomeric and subtelomeric regions in the human protozoan parasite Trypanosoma cruzi. *Roberto R. ...https://www.semanticscholar.org/paper/Characterisation-of-a-repetitive-DNA-sequence-from-Oquendo-Goman/9cc978c413fa4159afdac68452ad7cb00f0d6d0d
Nematocida parisii ATCC ® PRA-289™
Reference strain for genome sequencing project (Nematocida parisii ERTm1 genome sequencing project Available from: NCBI ...https://www.atcc.org/en/Products/Cells_and_Microorganisms/Protozoa/Protozoan_Genome_Sequencing_Strains/PRA-289.aspx?p=1&rel=%7B0%7D
The Toxoplasma Blog: January 2008
ProtozoaDB: dynamic visualization and exploration of protozoan genomes. Dávila AM, Mendes PN, Wagner G, Tschoeke DA, Cuadrat RR ... but will hopefully host other protozoan species as more genomes are sequenced. It is based on the Genomics Unified Schema and ... This is the first study to examine the generation of CD8(+) T cell immune response in a parasitic nematode and protozoan co- ... Apicomplexan genomes encode putative DNA cytosine methylation enzymes. To assess the presence of cytosine methylation of T. ...http://toxoplasmaparasite.blogspot.com/2008/01/
OPUS at UTS: Stage-specific expression of protease genes in the apicomplexan parasite, Eimeria tenella. - Open Publications of...
Genome, Protozoan. en_US. dc.subject.mesh. Genomic Library. en_US. dc.subject.mesh. Merozoites. en_US. ... Over forty protease genes were identified in the E. tenella genome. These were distributed across aspartic (three genes), ... Over forty protease genes were identified in the E. tenella genome. These were distributed across aspartic (three genes), ... We screened the Eimeria tenella genome database for proteases, classified these into families and determined their stage ...https://opus.lib.uts.edu.au/handle/10453/117997
This was the first free-living protozoan genome to be fully sequenced. D. discoideum consists of a 34Mb haploid genome with a ... Genome. The D. discoideum genome sequencing project was completed and published in 2005 by an international collaboration of ... Tandem repeats of trinucleotides are very abundant in this genome; one class of the genome is clustered leading researchers to ... Every genome that is sequenced plays an important role in identifying genes that have been gained or lost over time. ...https://en.academic.ru/dic.nsf/enwiki/8589209/Dictyostelium_discoideum
Pulsed Field Gel Electrophoresis - A. P. Monaco - Oxford University Press
DNA fragments greater than 50 kb and has made a significant impact on the analysis of both prokaryotic and eukaryotic genomes. ... 7. Functional analysis of mammalian genomes using yeast artificial chromosomes. 8. PFGE in the study of a bacterial pathogen ( ... The final two chapters describe the use of PFGE in the analysis of bacterial chromosomes and protozoan parasite chromosomes. ... DNA fragments greater than 50 kb and has made a significant impact on the analysis of both prokaryotic and eukaryotic genomes. ...https://global.oup.com/academic/product/pulsed-field-gel-electrophoresis-9780199635351?cc=us&lang=en&tab=description
Kary Ocaña's Homepage
... dynamic visualization and exploration of protozoan genomes ( the Annual Database Issue). Nucleic Acids Research, v. 36, p. D547 ... A Cloud-based Workflow for Phylogenetic Analysis of Drug Targets in Protozoan Genomes. In: Brazilian Symposium on ... Kary A. C. S. Ocaña; Davila, A. M. R. Phylogenomics-Based Reconstruction of Protozoan Species Tree. Evolutionary Bioinformatics ...http://www.lncc.br/~karyann/
Nonmammalian Genomic Analysis: A Practical Guide - Google Books
... environments and allows them to be used by those with no background in genome mapping or large-fragment cloning. Like having a ... and analysis of large DNA and the creation of chromosome and genome maps. This lab manual facilitates the transfer of these ... this unique book is intended to popularize the new techniques of genome analysis derived from the Human Genome Project. The ... Chapter 5 Genome Mapping of Protozoan Parasites by Linking Clones. 135. Chapter 6 Macrorestriction Mapping and Analysis of ...https://books.google.com.au/books?id=KuWpm5IMlpAC&dq=related:ISBN0521480086&source=gbs_citations_module_r&cad=6
Subtyping Novel Zoonotic Pathogen Cryptosporidium Chipmunk Genotype I - PubMed
To identify potential subtyping markers, we sequenced the genome of a human chipmunk genotype I isolate. Alt … ... Genome, Protozoan Actions. * Search in PubMed * Search in MeSH * Add to Search ... Based on the whole-genome sequence data, two genetic markers encoding the 60-kDa glycoprotein (gp60) and a mucin protein ( ... To identify potential subtyping markers, we sequenced the genome of a human chipmunk genotype I isolate. Altogether, 9,509,783 ...https://phgkb.cdc.gov/PHGKB/phgHome.action?action=forward&dbsource=cdcpub&id=2965
Genetic Diversity of Trichomonas vaginalis Clinical Isolates Determined by EcoRI Restriction Fragment Length Polymorphism of...
Repetitive elements in genomes of parasitic protozoa. Microbiol Mol Biol Rev 67 : 360-375.. [Google Scholar] ... Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science 315 : 207-212.. [Google Scholar] ... A clonal theory of parasitic protozoa: the population structures of Entamoeba, Giardia, Leishmania, Naegleria, Plasmodium, ...http://www.ajtmh.org/content/journals/10.4269/ajtmh.2009.80.245
OPUS at UTS: Polyketide synthesis genes associated with toxin production in two species of Gambierdiscus (Dinophyceae). - Open...
Genome, Protozoan. en_US. dc.subject.mesh. Multigene Family. en_US. dc.subject.mesh. Genome Size. en_US. ... Protozoan Proteins. en_US. dc.title. Polyketide synthesis genes associated with toxin production in two species of ... with genome sizes of 32.5 ± 3.7 Gbp and 35 ± 0.88 Gbp, respectively, and are amongst the most comprehensive yet reported from a ... with genome sizes of 32.5 ± 3.7 Gbp and 35 ± 0.88 Gbp, respectively, and are amongst the most comprehensive yet reported from a ...https://opus.lib.uts.edu.au/handle/10453/36131