Ensembl fungal genome annotation projectEnsembl fungal genome annotation project

Your basket is currently empty. i ,p>When browsing through different UniProt proteins, you can use the basket to save them, so that you can back to find or analyse them later.,p>,a href=/help/basket target=_top>More...,/a>,/p> ...
more infohttps://www.uniprot.org/database/DB-0148

Mining for gems in the fungal genomeMining for gems in the fungal genome

Their technique is called "genomic mining" because of its robust ability to dig through an entire fungal genome to locate ... The key to Keller s approach lies in a single fungal protein called LaeA. A few years ago, her team discovered that the ... Keller s team searched the genome for groups of contiguous genes that were inactive in the mutant. They knew these were very ... In a parallel experiment, Bok designed a fungal strain that produced extra amounts of LaeA. This time, the team searched for ...
more infohttps://www.innovations-report.com/html/reports/life-sciences/report-54273.html

History of the Fungal Genome Initiative | Broad InstituteHistory of the Fungal Genome Initiative | Broad Institute

Participants included academic and industrial fungal scientists as well as those with experience in genome sequencing and ... Fink invited a small group of fungal geneticists and biologists to discuss ways to accelerate the slow pace of fungal genome ... the first White paper developed by the Fungal Genome Initiative organization was submitted to the National Human Genome ... The group strongly agreed that the dearth of publicly available fungal genome sequence was a major barrier to biomedical ...
more infohttps://www.broadinstitute.org/fungal-genome-initiative/history-fungal-genome-initiative

Fungal Genomes Search using NCBI BLAST | SGDFungal Genomes Search using NCBI BLAST | SGD

The Saccharomyces Genome Database (SGD) provides comprehensive integrated biological information for the budding yeast ...
more infohttps://www.yeastgenome.org/blast-fungal?name=YKL216W&type=protein

Fungal Genomes Search using NCBI BLAST | SGDFungal Genomes Search using NCBI BLAST | SGD

The Saccharomyces Genome Database (SGD) provides comprehensive integrated biological information for the budding yeast ...
more infohttps://www.yeastgenome.org/blast-fungal?name=YLR134W&type=protein

Genome, Fungal | Profiles RNSGenome, Fungal | Profiles RNS

Fungal" by people in this website by year, and whether "Genome, Fungal" was a major or minor topic of these publications. ... "Genome, Fungal" is a descriptor in the National Library of Medicines controlled vocabulary thesaurus, MeSH (Medical Subject ... Below are the most recent publications written about "Genome, Fungal" by people in Profiles. ... Below are MeSH descriptors whose meaning is more general than "Genome, Fungal". ...
more infohttps://profiles.umassmed.edu/display/116674

Random insertional mutagenesis in fungal genomes to identify virulence factorsRandom insertional mutagenesis in fungal genomes to identify virulence factors

In: Plant Fungal Pathogens: Methods and Protocols / Bolton, M.D., Thomma, B.P.H.J., New York, USA : Humana Press, c/o Springer ... a protocol for the identification of pathogenicity and virulence genes through random insertional mutagenesis using the fungal ...
more infohttp://library.wur.nl/WebQuery/wurpubs/425890

First fungal genome sequence from Africa: a preliminary analysisFirst fungal genome sequence from Africa: a preliminary analysis

... www.fabinet.up.ac.za/genomes). The F. circinatum genome, whilst being in the expected size range for a Fusarium genome, has ... Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome Res. 2008;18:1979-1990 ... In response to these challenges, we sequenced the genome of Fusarium circinatum, a fungal pathogen of pine that causes pitch ... Scientifically, the aim was to sequence and annotate the genome of a fungal pathogen that is highly relevant in South Africa. ...
more infohttp://www.scielo.org.za/scielo.php?script=sci_arttext&pid=S0038-23532012000100022&lng=pt&nrm=iso&tlng=pt

1000 fungal genomes1000 fungal genomes

... Nominate a genome to sequence. Family level sampling of fungal genomes across the Fungal Tree of Life.. a ... The annotated genome has been updated to a high quality modern standard and includes RNA-seq data. The improved genome is ... Improving the Cacao Genome and Phytozome. An updated reference genome for Theobroma cacao Matina 1-6 has now been completed and ... of the Department of Energy has embarked on a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of ...
more infohttps://jgi.doe.gov/our-science/science-programs/fungal-genomics/1000-fungal-genomes/

DIGITAL.CSIC: Fungal genomes mining to discover novel sterol esterases and lipases as catalystsDIGITAL.CSIC: Fungal genomes mining to discover novel sterol esterases and lipases as catalysts

Fungal genomes mining to discover novel sterol esterases and lipases as catalysts. ... Results: In this work we present an in silico search of new sterol esterase and lipase sequences from the genomes of ...
more infohttps://digital.csic.es/handle/10261/109468

Comparative Genomic Analysis of Fungal Genomes Reveals Intron-Rich Ancestors - PubMedComparative Genomic Analysis of Fungal Genomes Reveals Intron-Rich Ancestors - PubMed

Comparative Genomic Analysis of Fungal Genomes Reveals Intron-Rich Ancestors Jason E Stajich et al. Genome Biol. 2007 ... In contrast to plants, CLO/PXGs only occur in about 30% of sequenced fungal genomes but are present in all major taxa. Fungal ... Comparative Genomic Analysis of Fungal Genomes Reveals Intron-Rich Ancestors Jason E Stajich 1 , Fred S Dietrich, Scott W Roy ... Pan-genome Analyses of Model Fungal Species CGP McCarthy et al. Microb Genom 5 (2). Feb 2019. PMID 30714895. ...
more infohttps://pubmed.ncbi.nlm.nih.gov/17949488/

Whole Genome Sequencing and Fungal Disease Outbreaks | Fungal Diseases | CDCWhole Genome Sequencing and Fungal Disease Outbreaks | Fungal Diseases | CDC

As more fungal genomes are analyzed and their data become publicly available, they can serve as reference genomes during other ... Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections.external icon J Clin ... CDC uses whole genome sequencing (WGS) to help solve fungal disease outbreaks and learn more about how they make people sick. ... Harnessing Whole Genome Sequencing in Medical Mycologyexternal icon. Curr Fungal Infect Rep. 2017 Jun 9. ...
more infohttps://www.cdc.gov/fungal/outbreaks/wgs.html

The Hyphal Tip | Digesting the fungal genomes | Page 4The Hyphal Tip | Digesting the fungal genomes | Page 4

JGI Department of Energys Joint Genome Institute in Walnut Creek, CA. *Sanger Welcome Trust Sanger Centre, Fungal Genome ... 1000 Fungal Genomes, chytridomycota, postdoc, zygomycete Postdoc: Early diverging fungi in the James lab at U. Michigan. ... Digesting the fungal genomes. Follow fungalgenomes on Twitter. My Tweets. Tags. *annotation ... Postdoc in Fungal Evolutionary Genomics. January 1, 2016. Jason Stajich Leave a comment ...
more infohttp://fungalgenomes.org/blog/page/4/

The Hyphal Tip | Digesting the fungal genomes | Page 70The Hyphal Tip | Digesting the fungal genomes | Page 70

JGI Department of Energys Joint Genome Institute in Walnut Creek, CA. *Sanger Welcome Trust Sanger Centre, Fungal Genome ... Fungal Genetics 2007 summary. March 26, 2007. Jason Stajich 1 Comment A Fungal Genetics 2007 summary.. Wow. What a meeting! I ... Digesting the fungal genomes. Follow fungalgenomes on Twitter. My Tweets. Tags. *annotation ... "This project is part of the Fungal Genome Initiative at the Broad Institute and was funded by NHGRI. This release contains a ...
more infohttp://fungalgenomes.org/blog/page/70/

The Inky Cap Mushroom Genome »  MycorWeb Fungal GenomicsThe Inky Cap Mushroom Genome » MycorWeb Fungal Genomics

... conference ecology ectomycorrhiza effectors endophyte evolution Fungal Biology fungal genomes genome genome evolution Genome ... The Inky Cap Mushroom Genome. June 16th, 2010 by Francis Martin Leave a reply » Over the last five years, several genomes of ... The paper describing this genome is now available online at PNAS. Coprinopsis cinerea is a saprobic mushroom belonging to the ... The genome of the mushroom model species Coprinopsis cinerea (= Coprinus cinereus) has been sequenced in 2003 and was publicly ...
more infohttp://mycor.nancy.inra.fr/blogGenomes/?p=1047

Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their inactivation in fungal...Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their inactivation in fungal...

We identified fungal genomes containing large numbers of TEs with many C to T mutations associated with species-specific ... We annotated TE sequences from 10 fungal genomes with different TE content (1-70%). We then used these TE sequences to carry ... Genomes from either Ascomycota or Basidiomycota that were massively invaded by TEs (Blumeria, Melampsora, Puccinia) were ... Phylogenomic analysis of fungal Dnmt1 MTases revealed a previously unreported association between these dinucleotide signatures ...
more infohttps://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-1347-1

Fungal Genomes - Fungal GenomicsFungal Genomes - Fungal Genomics

About , Genomes , Publications , Contact , Data available [Public Genome site] [BLAST server] [Download Data] Taxonomy Table ... Publicly-available genomes re-annotated for Genozymes project. Species. search genes. browse genome. genome source. ... Publicly released genomes sequenced and annotated by the Genozymes project Species. Search gene models. Browse genome. ... Additional genomes being sequenced for the Genozymes project Acremonium thermophilum ATCC 24622 Chaetomium olivicolor CBS ...
more infohttp://www.fungalgenomics.ca/mediawiki/index.php?title=Fungal_Genomes&oldid=1242&diff=prev

Fungal Genomes - Fungal GenomicsFungal Genomes - Fungal Genomics

About , Genomes , Publications , Contact , Data available [Public Genome site] [BLAST server] [Download Data] Taxonomy Table ... Publicly-available genomes re-annotated for Genozymes project. Species. search genes. browse genome. genome source. ... Publicly released genomes sequenced and annotated by the Genozymes project Species. Search gene models. Browse genome. ... Genomes released and annotated by Genozymes ====. +. ====. Publicly released genomes sequenced and annotated by the Genozymes ...
more infohttp://www.fungalgenomics.ca/mediawiki/index.php?title=Fungal_Genomes&diff=1278&oldid=1168

About | 1000 Fungal Genomes ProjectAbout | 1000 Fungal Genomes Project

Sequencing unsampled fungal diversity. Follow fungalgenomes on Twitter. My Tweets. Meta. *Register ...
more infohttp://1000.fungalgenomes.org/home/about/

Joey SpataforaJoey Spatafora

1000 Fungal Genomes Project. Search Primary Menu. Skip to content *About. *Graduate Student-Postdoc Challenge ... Update on 1KFG Genome Releases. December 18, 2013. Joey Spatafora Leave a comment ... Lichtheimia hyalospora v1.0 genome release. July 8, 2013. Joey Spatafora Leave a comment ... Melanomma pulvis-pyrius genome release. June 6, 2013. Joey Spatafora Leave a comment ...
more infohttp://1000.fungalgenomes.org/home/author/spatafora/

Evolution of fungal genomes | Department of BiologyEvolution of fungal genomes | Department of Biology

Start › Research › Research groups › Microbial Ecology › Research projects › Evolution of fungal genomes ... The analysis showed that L. bicolor has a relatively large genome, and that the large genome size is partly due to an expansion ... On the genome level, there are three, compatible mechanisms: changes in gene content, structural differences in gene products, ... Other parts of the proteome, most noticeable plant cell wall degrading enzymes, has been lost in the L. bicolor genome when ...
more infohttps://www.biology.lu.se/research/research-groups/microbial-ecology/research-projects/evolution-of-fungal-genomes

Calculating RIP mutation in fungal genomes using RIPCALCalculating RIP mutation in fungal genomes using RIPCAL

RIP is an important feature of fungal genomes as its distribution and extent have important implications for genome evolution. ... The software tool RIPCAL was developed for this purpose and since its release has become widely used in fungal genome analysis ... Calculating RIP mutation in fungal genomes using RIPCAL. In Genetic Transformation Systems in Fungi, Volume 2, ed. M. van den ... Background: Repeat-induced point mutation (RIP) is a fungal-specific genome defence mechanism that alters the sequences of ...
more infohttps://espace.curtin.edu.au/handle/20.500.11937/42312

Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis.  - PubMed - NCBIInsights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. - PubMed - NCBI

Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis.. Kämper J1, Kahmann R, Bölker M, Ma LJ, ... maydis genome assembly contains 6,902 predicted protein-encoding genes and lacks pathogenicity signatures found in the genomes ... Here we report the genome sequence for a member of this economically important group of biotrophic fungi. The 20.5-million-base ...
more infohttps://www.ncbi.nlm.nih.gov/pubmed/17080091?dopt=Abstract

Fungal PublicationsFungal Publications

2016) The genome of Xylona heveae provides a window into fungal endophytism. Fungal Biol 120(1), 26-42. 10.1016/j.funbio. ... 2016) Draft Genome Sequence of Microdochium bolleyi, a Dark Septate Fungal Endophyte of Beach Grass. Genome Announc 4(2). ... 2016) Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles. PLoS ... 2013) Fungal genomes mining to discover novel sterol esterases and lipases as catalysts. BMC Genomics 14, 712. 10.1186/1471- ...
more infohttps://jgi.doe.gov/our-science/science-programs/fungal-genomics/fungal-publications/

Erratum to: Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi | BMC Genomics...Erratum to: Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi | BMC Genomics...

To date, over hundreds of fungal genomes are publicly available. However, a systematic comparative analysis of fungal CAZymes ... In this correction, we removed these genomes after discussion with editors and data producers whom we should have contacted ... Our study provides insights into the variety and expansion of fungal CAZyme classes and revealed the relationship of CAZyme ... contains 9 unpublished genomes (Botryobasidium botryosum, Gymnopus luxurians, Hypholoma sublateritium, Jaapia argillacea, ...
more infohttps://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-6/figures/1