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*  Council For Responsible Genetics Blog | Venter Speaks Out on the Human Genome Project, Synthetic Biology and Personal Genomics...
SPIEGEL: It took eight years from the time the first bacterial genome was decoded until the human genome was completed. How ... And what else have I learned from my genome? Very little. We couldn't even be certain from my genome what my eye color was. ... It's the same money that PerkinElmer gave me to decode the human genome. With it, we sequenced the human genome in nine months ... SPIEGEL: The genome project has been called the Manhattan Project or Moon Landing of its era. It has also been said that ...
http://www.councilforresponsiblegenetics.org/blog/post/Venter-Speaks-Out-on-the-Human-Genome-Project-Synthetic-Biology-and-Personal-Genomics-Among-Other-Things.aspx
*  9780521129619 - The Dynamic Bacterial Genome | eCampus.com
9780521129619 Our cheapest price for The Dynamic Bacterial Genome is $93.12. Free shipping on all orders over $35.00. ... Genome rearrangements are a result of the actions of discrete genetic elements such as conjugative transposons, plasmids, phage ... This book provides an in-depth analysis of the mechanisms and biological consequences of genome rearrangements in bacteria. ... The biological effects of these rearrangements are far-reaching and impact on bacterial virulence, antibiotic resistance and ...
http://www.ecampus.com/dynamic-bacterial-genome-1st-edited-peter/bk/9780521129619
*  Bacterial Genome May Hold Answers To Mercury Mystery - Redorbit
A newly sequenced bacterial genome from a team led by the Department of Energy's Oak Ridge National Laboratory (ORNL) could ... The new genome, sequenced at the California-based DOE Joint Genome Institute (JGI) and published in the Journal of Bacteriology ... Few bacterial species are capable of this conversion, and exactly how the transformation takes place has been a matter of ... "This is the first Desulfovibrio genome that will methylate mercury that's been published," Brown said. "Now that we have this ...
http://www.redorbit.com/news/science/2027236/bacterial_genome_may_hold_answers_to_mercury_mystery/
*  Discovering Complete Quasispecies in Bacterial Genomes | Genetics
We extracted REPIN populations from 10 bacterial genomes in the following manner: For each of the genomes we determined the ... REPETITIVE sequences are common in most bacterial genomes, but rare compared to their prevalence in most eukaryotic genomes ( ... REP sequences are ∼25-bp-long, highly abundant sequences in bacterial genomes (Higgins et al. 1982; Aranda-Olmedo et al. 2002; ... 2012 Structuring the bacterial genome: Y1-transposases associated with REP-BIME sequences. Nucleic Acids Res. 40: 3596-3609. ...
http://www.genetics.org/content/206/4/2149
*  Inferring Bacterial Genome Flux While Considering Truncated Genes | Genetics
Daubin, V., and H. Ochman, 2004 Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli. Genome Res. 14: 1036- ... Daubin, V., E. Lerat and G. Perriere, 2003a The source of laterally transferred genes in bacterial genomes. Genome Biol. 4: R57 ... Garcia-Vallvé, S., A. Romeu and J. Palau, 2000 Horizontal gene transfer in bacterial and archaeal complete genomes. Genome Res. ... and most of them are transient in bacterial genomes (Lerat and Ochman 2005). Zhaxybayeva et al. (2007) reported that genomes ...
http://www.genetics.org/content/186/1/411
*  The Fifty Most Sequenced Bacterial Genomes - Mike the Mad Biologist
Nick Loman listed the fifty most sequenced bacterial genomes according to NCBI. A reader at Nick's blog came up with an ... The Fifty Most Sequenced Bacterial Genomes. Posted by Mike on April 5, 2011 ... These are not resequenced genomes (SNP calling) where we map a strain's mutations back to a previously sequenced genome (there ... Another month or two and my lab will add five more S. aureus genomes to that list. Must do battle with the Salmonella enterica, ...
http://scienceblogs.com/mikethemadbiologist/2011/04/05/the-fifty-most-sequenced-bacte/
*  JCVI: Impact of Donor-recipient Phylogenetic Distance on Bacterial Genome Transplantation.
Genome transplantation (GT) allows the installation of purified chromosomes into recipient cells, causing the resulting ... capricolum (Mcap), and the main factors driving the compatibility between a donor genome and a recipient cell are poorly ... Using Mcap as the recipient cell, we successfully transplanted the genome of six bacteria belonging to the Spiroplasma ... This key process remains a bottleneck in synthetic biology, especially for genome engineering strategies of intractable and ...
http://www.jcvi.org/cms/publications/listing/abstract/article/impact-of-donor-recipient-phylogenetic-distance-on-bacterial-genome-transplantation/
*  Didier Mazel - Bacterial Genome Plasticity • Research - Institut Pasteur
Bacterial genomes are mainly composed of two types of replicons: chromosomes and plasmids. Plasmids are accessory mobile ... Location: in the bacterial Genome Plasticity unit Contact: Deshmukh Gopaul (deshmukh.gopaul@pasteur.fr or 85 98) ... We study the mechanisms responsible of the bacterial genome variability, with a special interest for those involved in ... This third project is to investigate other factors involved in genome plasticity of the complex genome of Vibrio species. The ...
https://research.pasteur.fr/en/team/bacterial-genome-plasticity/
*  Burkholderia contaminans Biofilm Regulating Operon and Its Distribution in Bacterial Genomes
... Olga L. Voronina,1 Marina S. ... contaminans clinical and LBP strains were analyzed by whole genome sequencing and bioinformatics resources. A four-component ...
https://www.hindawi.com/journals/bmri/2016/6560534/abs/
*  Burkholderia contaminans Biofilm Regulating Operon and Its Distribution in Bacterial Genomes
... Olga L. Voronina,1 Marina S. ... For example, the Mumia flava genome was unexpectedly big: 16.4 Mb, in contrast to the few other Nocardioidaceae genomes that ... Preparation of genomic DNA for the whole genome sequencing was performed as described [9]. Whole genome sequencing of B. ... "The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes," Nucleic Acids Research, vol ...
https://www.hindawi.com/journals/bmri/2016/6560534/
*  Whole genome sequencing of bacterial genomes - tools and applications | Coursera
This course will cover the topic of Whole genome sequencing (WGS) of bacterial genomes which is becoming more and more ... ... Learn Whole genome sequencing of bacterial genomes - tools and applications from Technical University of Denmark (DTU). ... This course will cover the topic of Whole genome sequencing (WGS) of bacterial genomes which is becoming more and more relevant ... Welcome and introduction to typing of bacteria and use of Whole genome sequencing applied to surveillance of bacterial ...
https://www.coursera.org/learn/wgs-bacteria?lipi=urn%3Ali%3Apage%3Ad_flagship3_feed%3BzkGxet%2B6RIS0NW9VqVNfEQ%3D%3D
*  Team Demonstrates De Novo Assembly of Bacterial Genome from Nanopore Data Alone | GenomeWeb
Researchers in Canada and the UK have used data from the Oxford Nanopore MinIon alone to assemble a bacterial genome into a ... Team Demonstrates De Novo Assembly of Bacterial Genome from Nanopore Data Alone. Feb 23, 2015 ... Home » Team Demonstrates De Novo Assembly of Bacterial Genome from Nanopore Data Alone ... and the University of Birmingham in the UK have used data from the Oxford Nanopore MinIon to assemble a bacterial genome into a ...
https://www.genomeweb.com/sequencing-technology/team-demonstrates-de-novo-assembly-bacterial-genome-nanopore-data-alone
*  New laptop program can identify drug resistance from bacterial genomes | University of Oxford
Scientists have developed an easy-to-use computer program that can quickly analyse bacterial DNA from a patient's infection and ... New laptop program can identify drug resistance from bacterial genomes. HealthResearchGeneticsInnovation ... Genome sequencing has the potential to transform the way we diagnose and treat bacterial infections in NHS hospitals, but one ... One of the barriers to making whole genome sequencing a routine part of NHS care is the need for powerful computers and ...
http://www.ox.ac.uk/node/116208
*  Three bacterial genomes found lurking inside recently sequenced fruit fly genomes
... 28.02.2005 ... simulans and Wolbachia wMoj in the genome of D. mojavensis. The team compared the new Wolbachia genomes with the known genome ... We thought this was interesting as much for the novelty of the way the bacterial genomes were sequenced than what we learned ... The existence of these bacterial species inside the fruit fly genome database is an artifact of the way the fly was sequenced, ...
http://www.innovations-report.com/html/reports/life-sciences/report-41001.html
*  Scientists Achieve First Bacterial Genome Transplantation; Promise to Develop First Synthetic Organism | Medgadget
... transplanted a bacterial chromosome from one type of bacteria into anothe ... Scientists Achieve First Bacterial Genome Transplantation; Promise to Develop First Synthetic Organism. June 29th, 2007 Editors ... Press release: JCVI Scientists Publish First Bacterial Genome Transplantation Changing One Species to Another …. ... and have completely replaced an entire bacterial genome and its expression. The work of Carole Lartigue, Ph.D. and colleagues ...
https://www.medgadget.com/2007/06/scientists_achieve_first_bacterial_genome_transplantation_promise_to_develop_first_synthetic_organis.html
*  aligning with bacterial genome
BG7 usage for bacterial genome annotation Hi All Is anyone regularly using BG7 for bacterial genome annotation? I'm not seeing ... Now i am trying to align these reads to the bacterial genome in order to know if the samples also have some bacterial genome in ... you could use SNAP/Bowtie2 to align the reads against bacterial genomes from NCBI. There are pipelines built for this, but it ... To answer your question though, you can use any good short read mapper (bwa, bowtie2) to align to bacterial genome, since there ...
https://www.biostars.org/p/193312/
*  BacMap: Bacterial Genome Atlas
Genome. MSB8:. Chromosome: 1,860,725 bp. Background. Thermotoga is typically a rod-shaped cell enveloped in an outer cell ...
http://wishart.biology.ualberta.ca/BacMap/cgi/getSpeciesCard.cgi?accession=NC_000853&ref=index_all.html
*  BacMap: Bacterial Genome Atlas
Genome. RSA 493:. Chromosome: 1,995,275 bp. Plasmid pSAP1: 94,287 bp. Background. Coxiella burnetti is a gram-negative, non- ... From http://www.ebi.ac.uk/2can/genomes/bacteria.html). Sequenced By. RSA 493:. The Institute for Genomic Research, 9712 Medical ...
http://wishart.biology.ualberta.ca/BacMap/cgi/getSpeciesCard.cgi?accession=NC_002971&ref=index_2.html
*  BacMap: Bacterial Genome Atlas
Genome. wMel:. Chromosome: 1,267,782 bp. Background. Wolbachia, which are found in a variety of invertebrate species, are of ... Wolbachia, a bacterial endosymbiont of diverse arthropods, affects its host's reproduction and so is consequential for its ... For example, the genome is unique among sequenced obligate intracellular species in both being highly streamlined and ... Analysis of the genome, in particular phylogenomic comparisons with other intracellular bacteria, has revealed many insights ...
http://wishart.biology.ualberta.ca/BacMap/cgi/getSpeciesCard.cgi?accession=NC_002978&ref=index_2.html
*  Bacterial genome - Wikipedia
Bacterial genomes are generally smaller and less variant in size among species when compared with genomes of animals and single ... One of the smallest bacterial genomes ever to be sequenced is that of the endosymbiont Carsonella rudii. At 160 kbp, the genome ... A study that included, but was not limited to, 478 bacterial genomes, concluded that as genome size increases, the number of ... The relationship between life-styles of bacteria and genome size raises questions as to the mechanisms of bacterial genome ...
https://en.wikipedia.org/wiki/Bacterial_genome
*  Addgene: RNA-guided editing of bacterial genomes using CRISPR-Cas systems.
RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Jiang W, Bikard D, Cox D, Zhang F, Marraffini LA. Nat ... A two plasmid system for editing bacterial genomes using an RNA-guided Cas9 nuclease. ...
https://www.addgene.org/browse/article/6312/
*  Phylogenetic Tree of Bacterial Genomes Related to a Jgi Nature Genetics Paper [image] | EurekAlert! Science News
This image depicts a phylogenetic tree of over 3,800 high quality and non-redundant bacterial genomes. Outer ring denotes the ... have exploited a catalog of bacterial genomes to identify and characterize candidate genes that aid bacteria in adapting to ... and inner ring denotes the root-associated genomes within plant-associated genomes. Taxon names are color-coded based on phylum ... 18, 2017 in Nature Genetics, a team led by researchers at Joint Genome Institute (JGI) and the Howard Hughes Medical Institute ...
https://eurekalert.org/multimedia/pub/159021.php
*  Genes | Free Full-Text | Ecological and Temporal Constraints in the Evolution of Bacterial Genomes | HTML
In addition, we discuss the temporal constraints in the evolution of bacterial genomes, considering bacterial evolution from ... In the present article we review the differential contribution to the evolution of bacterial genomes that processes such as ... bacterial core genomes are rather stable (see above), and it can be stated that the evolution of bacterial genome is an example ... each of which measures a different feature of bacterial genomes [45]. PFGE analyses the overall structure of bacterial genomes ...
http://www.mdpi.com/2073-4425/2/4/804/htm
*  ASMscience | Bacterial Genomes-All Sh
Overall, bacterial genomes range in size from about 0.6 to 9.4 Mb. In a recent review, it was suggested that there may be a ... The genome size of Bacillus cereus strains varies from 5.5 to 6.3 Mb, and great diversity is seen in the number and ... This chapter summarizes the recent findings of bacterial genomics and comments on the themes and trends which are emerging. A ... relationship between the genome sizes and the lifestyles of bacteria. ...
http://www.asmscience.org/content/book/10.1128/9781555818180.chap3