Research Publications: UM-SG-RS-2005-07 | Maryland Sea GrantResearch Publications: UM-SG-RS-2005-07 | Maryland Sea Grant

In this study, based on 16S rRNA gene sequence similarity and phenotypic analyses, a new genus, Saccharophagus, is proposed to ... S. degradans 2-40(T) shares 90.5% 16S rRNA gene sequence similarity with the type strain of the Microbulbifer type species, ... and can be further distinguished from members of these two genera by 16S rRNA gene cluster analysis, the ability to utilize 10 ...
more infohttp://www.mdsg.umd.edu/research-publications/um-sg-rs-2005-07

中国科学院水生生物研究所机构知识库(IHB OpenIR): Reevaluation of the phylogenetic relationship between Mobilid and Sessilid中国科学院水生生物研究所机构知识库(IHB OpenIR): Reevaluation of the phylogenetic relationship between Mobilid and Sessilid

... based on small subunit rRNA genes sequences,JOURNAL OF EUKARYOTIC MICROBIOLOGY,2006,53(5):397-403 ... In order to shed more light into the evolutionary relationships within peritrichs, the complete small subunit rRNA (SSU rRNA) ... In order to shed more light into the evolutionary relationships within peritrichs, the complete small subunit rRNA (SSU rRNA) ... based on small subunit rRNA genes sequences. ...
more infohttp://ir.ihb.ac.cn/handle/152342/8846

Environmental Microbiology - Raina M. Maier, Ian L. Pepper, Charles P. Gerba - Google KitaplarEnvironmental Microbiology - Raina M. Maier, Ian L. Pepper, Charles P. Gerba - Google Kitaplar

Microbiology environmental samples enzyme example exposure factors fecal FIGURE filter fluorescent fomites fungi gene genome ... pollution populations potential probe production protein protozoa quorum sensing reduced respiration result risk rotavirus rRNA ...
more infohttps://books.google.com.tr/books/about/Environmental_microbiology.html?hl=tr&id=A2zL8YBXQfoC

Unlinked rRNA genes are widespread among bacteria and archaea | The ISME JournalUnlinked rRNA genes are widespread among bacteria and archaea | The ISME Journal

In reality, some bacteria and archaea do not share this canonical rRNA arrangement-their 16S and 23S rRNA genes are separated ... Ribosomal RNA genes are typically organized into a single operon, an arrangement thought to facilitate gene regulation. ... Ribosomes are essential to cellular life and the genes for their RNA components are the most conserved and transcribed genes in ... We found that up to 41% of rRNA genes in soil were unlinked, in contrast to the human gut, where all sequenced rRNA genes were ...
more infohttps://www.nature.com/articles/s41396-019-0552-3?error=cookies_not_supported&code=524a70f5-001d-452a-add5-94b3f2078369

Direct Amplification of rRNA Genes in Diagnosis of Bacterial Infections | Journal of Clinical MicrobiologyDirect Amplification of rRNA Genes in Diagnosis of Bacterial Infections | Journal of Clinical Microbiology

Direct Amplification of rRNA Genes in Diagnosis of Bacterial Infections. Kaisu Rantakokko-Jalava, Simo Nikkari, Jari Jalava, ... Direct Amplification of rRNA Genes in Diagnosis of Bacterial Infections. Kaisu Rantakokko-Jalava, Simo Nikkari, Jari Jalava, ... Direct Amplification of rRNA Genes in Diagnosis of Bacterial Infections. Kaisu Rantakokko-Jalava, Simo Nikkari, Jari Jalava, ... Direct Amplification of rRNA Genes in Diagnosis of Bacterial Infections Message Subject (Your Name) has forwarded a page to you ...
more infohttps://jcm.asm.org/content/38/1/32.abstract

High throughput 16S rRNA gene amplicon sequencing - Forskningsportal, Aalborg UniversitetHigh throughput 16S rRNA gene amplicon sequencing - Forskningsportal, Aalborg Universitet

High throughput 16S rRNA gene amplicon sequencing: A fast and cheap method to study the influence of microbial community ... In conclusion, 16S rRNA gene amplicon sequencing provides a high throughput approach for a rapid and cheap community profiling ... In conclusion, 16S rRNA gene amplicon sequencing provides a high throughput approach for a rapid and cheap community profiling ... In this study we show how 16S rRNA gene amplicon sequencing can be used to reveal factors of importance for the operation of ...
more infohttp://vbn.aau.dk/da/publications/high-throughput-16s-rrna-gene-amplicon-sequencing

Browsing  by Subject 16S rRNA gene next-generation sequencingBrowsing by Subject "16S rRNA gene next-generation sequencing"

Browsing by Subject "16S rRNA gene next-generation sequencing". 0-9. A. B. C. D. E. F. G. H. I. J. K. L. M. N. O. P. Q. R. S. T ...
more infohttps://uwspace.uwaterloo.ca/browse?value=16S+rRNA+gene+next-generation+sequencing&type=subject

Differential amplification of rRNA genes by polymerase chain reaction. | Applied and Environmental MicrobiologyDifferential amplification of rRNA genes by polymerase chain reaction. | Applied and Environmental Microbiology

Differential amplification of rRNA genes by polymerase chain reaction.. A L Reysenbach, L J Giver, G S Wickham, N R Pace ... Differential amplification of rRNA genes by polymerase chain reaction. Message Subject (Your Name) has forwarded a page to you ...
more infohttps://aem.asm.org/content/58/10/3417/figures-only

PCR primers to amplify 16S rRNA genes from cyanobacteria. | Applied and Environmental MicrobiologyPCR primers to amplify 16S rRNA genes from cyanobacteria. | Applied and Environmental Microbiology

PCR primers to amplify 16S rRNA genes from cyanobacteria. Message Subject (Your Name) has forwarded a page to you from Applied ... PCR primers to amplify 16S rRNA genes from cyanobacteria.. U Nübel, F Garcia-Pichel, G Muyzer ... We developed and tested a set of oligonucleotide primers for the specific amplification of 16S rRNA gene segments from ... Gene segments selectively retrieved from cyanobacteria and diatoms in unialgal but nonaxenic cultures and from cyanobionts in ...
more infohttps://aem.asm.org/content/63/8/3327?ijkey=38ab59218cf17cdb4bd5f87613613bd5c22b2567&keytype2=tf_ipsecsha

Diarrhoea-predominant irritable bowel syndrome distinguishable by 16S rRNA gene phylotype quantificationDiarrhoea-predominant irritable bowel syndrome distinguishable by 16S rRNA gene phylotype quantification

All assays targeted 16S rRNA gene phylotypes putatively associated with IBS, based on 16S rRNA gene library sequence analysis. ... 16S rRNA Gene-targeted TTGE in Determining Diversity of Gut Microbiota during Acute Diarrhoea and Convalescence. Monira, ... Analysis of the D1/D2 domains of the large subunit (LUS) rRNA gene and internal transcribed spacer (ITS) regions of these ... Eight of the target phylotypes had less than 95% similarity to cultured bacterial species according to their 16S rRNA gene ...
more infohttp://connection.ebscohost.com/c/articles/47336368/diarrhoea-predominant-irritable-bowel-syndrome-distinguishable-by-16s-rrna-gene-phylotype-quantification

Frontiers | Species Richness, rRNA Gene Abundance, and Seasonal Dynamics of Airborne Plant-Pathogenic Oomycetes | MicrobiologyFrontiers | Species Richness, rRNA Gene Abundance, and Seasonal Dynamics of Airborne Plant-Pathogenic Oomycetes | Microbiology

106 rRNA genes per cubic meter of sampled air in summer. The presence and high concentration of rRNA genes in air suggests that ... The abundance of Oomycetes rRNA genes was low in winter and enhanced during spring, summer, and fall, with a dominance of ... FIGURE 3. Oomycetes rRNA gene abundance retrieved from qPCR analysis. (A) The gene abundance (rRNA genes m-3 air) of selected ... 106 rRNA genes per cubic meter of sampled air in summer. The presence and high concentration of rRNA genes in air suggests that ...
more infohttps://www.frontiersin.org/articles/10.3389/fmicb.2018.02673/full

Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and...Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and...

The gene in this thermophile was systematically replaced with a diverse array of heterologous genes, resulting in the discovery ... Here we show the genetic interoperability and promiscuity of 16S rRNA in the ribosomes of an extremely thermophilic bacterium, ... However, a growing number of reports suggest the occurrence of horizontal gene transfer, raising genealogical questions. ... Remarkably, cold-adapted mutants were obtained carrying chimeric or full-length heterologous genes, indicating that horizontal ...
more infohttps://www.nature.com/articles/s41598-019-47807-z?error=cookies_not_supported&code=03366146-1aa4-444f-9cf5-1462e1969dc8

Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana | G3: Genes | Genomes | GeneticsUnstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana | G3: Genes | Genomes | Genetics

rRNA gene copy number is thus an interesting example of "missing heritability"-a trait that is heritable in pedigrees, but not ... Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana. View ORCID ProfileFernando A. Rabanal, Viktoria Nizhynska, ... Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana. View ORCID ProfileFernando A. Rabanal, Viktoria Nizhynska, ... Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana. View ORCID ProfileFernando A. Rabanal, Viktoria Nizhynska, ...
more infohttp://www.g3journal.org/content/7/4/1201.abstract

Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. | Journal of BacteriologyAnalysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. | Journal of Bacteriology

Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing.. T M Schmidt, E F DeLong, N R Pace ... Thirty-eight clones containing 16S rRNA genes were identified in a screen of 3.2 x 10(4) recombinant phage, and portions of the ... Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. ... Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. ...
more infohttps://jb.asm.org/content/173/14/4371?ijkey=72cd4db501345fd0bea308cc884ae387e6a9f3ed&keytype2=tf_ipsecsha

Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. | Journal of BacteriologyAnalysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. | Journal of Bacteriology

Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing.. T M Schmidt, E F DeLong, N R Pace ... Thirty-eight clones containing 16S rRNA genes were identified in a screen of 3.2 x 10(4) recombinant phage, and portions of the ... Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. ... Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. ...
more infohttps://jb.asm.org/content/173/14/4371?ijkey=1c7caa011644474e6d3964e1e898e6606f9f5a9b&keytype2=tf_ipsecsha

Antarctic Peninsula Bacterioplankton 16S rRNA gene surveys and metagenomes from Winter 2002 and Summer 2006.Antarctic Peninsula Bacterioplankton 16S rRNA gene surveys and metagenomes from Winter 2002 and Summer 2006.

... Dataset homepage ... Murray A (2015). Antarctic Peninsula Bacterioplankton 16S rRNA gene surveys and metagenomes from Winter 2002 and Summer 2006… ... We report here an environmental genomic and small subunit ribosomal RNA (SSU rRNA) analysis of winter and summer Antarctic ...
more infohttps://www.gbif.org/dataset/2cc6227c-a416-4928-bd1f-8458741b8377

Transcriptional analysis of nucleolar dominance in polyploid plants: Biased expression/silencing of progenitor rRNA genes is...Transcriptional analysis of nucleolar dominance in polyploid plants: Biased expression/silencing of progenitor rRNA genes is...

Furthermore, in Brassica napus, rRNA genes silenced in vegetative tissues were found to be expressed in all floral organs, ... Furthermore, in Brassica napus, rRNA genes silenced in vegetative tissues were found to be expressed in all floral organs, ... Despite numerous cytogenetic studies, little is known about nucleolar dominance at the level of rRNA gene expression in plants ... Despite numerous cytogenetic studies, little is known about nucleolar dominance at the level of rRNA gene expression in plants ...
more infohttps://www.pnas.org/content/94/7/3442.abstract

Transcriptional analysis of nucleolar dominance in polyploid plants: Biased expression/silencing of progenitor rRNA genes is...Transcriptional analysis of nucleolar dominance in polyploid plants: Biased expression/silencing of progenitor rRNA genes is...

B. nigra rRNA genes are dominant over B. oleracea rRNA genes in the tetraploid, B. carinata. RNA isolated from B. nigra and B. ... B. nigra rRNA genes are dominant over B. rapa rRNA genes in both natural and synthetic lines of the tetraploid B. juncea. RNA ... 1B). Conversely, B. nigra rRNA genes have the shortest intergenic spacers, yet are dominant over the rRNA genes of the other ... It has been argued that plants have more rRNA genes than they need (8). For instance, maize can have 2,500-24,000 rRNA genes ...
more infohttps://www.pnas.org/content/94/7/3442?ijkey=238641bdff5eba972ca565d96ce5d02f01aab3a1&keytype2=tf_ipsecsha

Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species.  -...Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. -...

The 16S rRNA gene has been used extensively for this task when coupled with a well-curated database, such as EzTaxon, ... Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species.. Kim OS ...
more infohttps://www.ncbi.nlm.nih.gov/pubmed/22140171?dopt=Abstract

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences.  - PubMed - NCBIUniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. - PubMed - NCBI

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences.. Yarza P1, Yilmaz P2 ... Publicly available sequence databases of the small subunit ribosomal RNA gene, also known as 16S rRNA in bacteria and archaea, ... we propose rational taxonomic boundaries for high taxa of bacteria and archaea on the basis of 16S rRNA gene sequence ... In addition, our analyses suggest that most of the 16S rRNA sequences of the high taxa will be discovered in environmental ...
more infohttps://www.ncbi.nlm.nih.gov/pubmed/25118885?dopt=Abstract

Sequence Characterization of Mitochondrial 12S rRNA Gene in Mouse Deer (Moschiola indica) for PCR-RFLP Based Species...Sequence Characterization of Mitochondrial 12S rRNA Gene in Mouse Deer (Moschiola indica) for PCR-RFLP Based Species...

Sequence Characterization of Mitochondrial 12S rRNA Gene in Mouse Deer (Moschiola indica) for PCR-RFLP Based Species ... characterization and polymerase chain reaction-restriction fragment length polymorphism of the mitochondrial DNA 12S rRNA gene ... mitochondrial 12S rRNA sequence and its use in differentiation from closely related poultry species," British Poultry Science, ...
more infohttps://www.hindawi.com/journals/mbi/2013/783925/ref/

PLOS ONE: Taxonomic Classification of Bacterial 16S rRNA Genes Using Short Sequencing Reads: Evaluation of Effective Study...PLOS ONE: Taxonomic Classification of Bacterial 16S rRNA Genes Using Short Sequencing Reads: Evaluation of Effective Study...

8,500 manually curated 16S rRNA gene sequences from cultured bacteria and a set of over one million bacterial 16S rRNA gene ... As a result, high-throughout studies of microbial communities often do not sequence the entire 16S rRNA gene. The challenge is ... The typical approach is to perform high-throughout sequencing of 16S rRNA genes, which are then taxonomically classified based ... to obtain reliable representation of bacterial communities through taxonomic classification of short 16S rRNA gene sequences. ...
more infohttp://journals.plos.org/plosone/article/related?id=10.1371/journal.pone.0053608

Absence of Spiroplasma or Other Bacterial 16S rRNA Genes in Brain Tissue of Hamsters with Scrapie | Journal of Clinical...Absence of Spiroplasma or Other Bacterial 16S rRNA Genes in Brain Tissue of Hamsters with Scrapie | Journal of Clinical...

We amplified the DNA using primers developed specifically to detect spiroplasma rRNA genes and mycoplasma rRNA genes, as well ... Absence of Spiroplasma or Other Bacterial 16S rRNA Genes in Brain Tissue of Hamsters with Scrapie. Irina Alexeeva, Ellen J. ... For a bacterium such as E. coli, which has 7 copies of the 16S rRNA gene per genome (20), as few as 100 genomes would be ... When the sequence of the spiroplasma primers was checked against the 16S rRNA gene sequence of M. arginini, it was found that ...
more infohttps://jcm.asm.org/content/44/1/91