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*  RNA Transcription Detected on Chromosomes 21 and 22 Using High Density Oligonucleotide Arrays
... the predominant utilization of exon sequences during differentially spliced gene expression and 3) a empirically derived set of ...
http://web.ornl.gov/sci/techresources/meetings/transcriptome2002/gingeras.shtml
*  Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues...
... a symposium on gene expression profiling for archival tissues. . Biblioteca virtual para leer y descargar libros, documentos, ... Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues ... Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues ... ResultsThe Emerging Technologies for Translational Bioinformatics symposium on gene expression profiling for archival tissues ...
http://libros.duhnnae.com/2017/jul2/149890560122-Report-on-emerging-technologies-for-translational-bioinformatics-a-symposium-on-gene-expression-profiling-for-archival-tissues.php
*  Microarray Analysis of Differential Gene Expression Profile in Peripheral Blood Cells of Patients with Human Essential...
Gene expression Omnibus: NCBI gene expression and hybridization array data. Nucleic Acids Res. 2002;30:2077-2210 ... We identified 31 up-regulated genes and 18 down-regulated genes with FC of ≥2 or≤0.5 and q-value ≤5 % in expression. These ... Unbold and bold: up and down regulated genes, respectively.. Probe Set ID. Gene Symbol. Gene Title. Score(d) *. Fold Change. q- ... Gene Ontology Analysis. The differentially expressed genes were classified with gene ontology (GO) analysis according to their ...
http://www.medsci.org/v08p0168.htm
*  TransRate: reference-free quality assessment of de novo transcriptome assemblies. - Oxford Neuroscience
Computational Biology, Gene Expression Profiling, High-Throughput Nucleotide Sequencing, RNA, Long Noncoding, RNA, Messenger, ...
https://www.neuroscience.ox.ac.uk/publications/628076
*  Trinity - a method for de novo assembly of full-length transcripts | RNA-Seq Blog
Trinity recovers more full-length transcripts across a broad range of expression levels, with a sensitivity similar to methods ... including alternatively spliced isoforms and transcripts from recently duplicated genes. Compared with other de novo ... These three types are used to generate a base-resolution expression profile for each gene. Nat Rev Genet 10(1):57-63 (2009) ... EGSEA - easy and efficient ensemble gene set testing. *RNA-Seq discovers genes that repair spinal cord in fish are also in ...
http://www.rna-seqblog.com/trinity-a-method-for-de-novo-assembly-of-full-length-transcripts/
*  Comparative study of joint analysis of microarray gene expression data in survival prediction and risk assessment of breast...
Microarray gene expression data sets are jointly analyzed to increase statistical power. They could either be merged together ... Comparative study of joint analysis of microarray gene expression data in survival prediction and risk assessment of breast ... Comparative study of joint analysis of microarray gene expression data in survival prediction and risk assessment of breast ... The methods were applied to eight microarray gene expression data sets, totaling 1324 patients with two clinical endpoints, ...
https://infoscience.epfl.ch/record/225216
*  Analysing subsets of gene expression data to find putatively co-regulated genes - OpenThesis
Analysing subsets of gene expression data to find putatively co-regulated genes. by Karjalainen, Merja ... The results indicate that analysing co-expression in subsets of gene expression data derives true-positive connections, with ... The original gene expression data set was partitioned into subsets and similarity was computed for both the whole timed series ... However, it is worth to continue further analysis of the subsets of gene expression data, which is based on the multi-factorial ...
http://www.openthesis.org/documents/Analysing-subsets-gene-expression-data-431855.html
*  Forests | Free Full-Text | De Novo Transcriptome Characterization, Gene Expression Profiling and Ionic Responses of Nitraria...
In this research, RNA-seq, digital gene expression (DGE), and high flux element analysis technologies were used to investigate ... In total, 58,340 and 34,033 unigenes were annotated with gene ontology (GO) terms and mapped in Kyoto Encyclopedia of Genes and ... Three differentially expressed genes (DEGs) libraries were subsequently constructed from the leaves of N. sibirica Pall. ... Our findings have identified potential genes involved in salt tolerance and in the reference transcriptome and have revealed ...
http://www.mdpi.com/1999-4907/8/6/211
*  Hierarchical cluster analysis. Using a hierarchical met | Open-i
Gene Expression Regulation/genetics*. *MicroRNAs/antagonists & inhibitors/biosynthesis*. *Nerve Compression Syndromes/genetics ... The expression of muscle-specific miRNAs in entrapment neuropathy is different from our previous observations in sciatic nerve ... The expression of muscle-specific miRNAs in entrapment neuropathy is different from our previous observations in sciatic nerve ... In contrast, there were no statistical differences in the expression of miR-206 during nerve entrapment and after decompression ...
https://openi.nlm.nih.gov/detailedresult.php?img=PMC2927509_1471-2474-11-181-1&req=4
*  EpiRegNet: constructing epigenetic regulatory networks from high throughput gene expression data for humans
Gene List: Label Add Tool Example 1 Example 2 ,. upload a gene list file.. ... Gene selection: Top number. 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 15. 20. - OR - Top percent. 1%. 2%. 3%. 4%. 5%. 6%. 7%. 8%. 9%. 10% ...
http://147.8.193.36/EpiRegNet/
*  Application of affymetrix array and massively parallel signature sequencing for identification of genes involved in prostate...
Analysis of the combined transcriptomes identified 66 genes unique to LNCaP cells and 33 genes unique to C4-2 cells. Expression ... 3,180 genes were only detected by Affymetrix and 1,169 genes were only detected by MPSS. Similarly, in C4-2, 4,121 genes were ... Our data indicates that transcriptome profiling with a single methodology will not fully assess the expression of all genes in ... Expression array results were verified with RT-PCR. Results: Comparison of the data revealed that both technologies detected ...
https://digital.lib.washington.edu/researchworks/handle/1773/15859
*  A consensus prognostic gene expression classifier for ER positive breast cancer | Genome Biology | Full Text
Gene Ontology. Enrichment of gene ontologies among the top 100 prognostic genes was studied using the Gene Ontology (GO) Tree ... denotes the normalized expression of gene r gp in sample i of training study s ∈ S train . The expression normalization is done ... Heatmaps of relative gene expression (green = 'low', red = 'high') of the optimal 52-gene classifier and accompanying MPI ... with the vector of normalized gene expression values (x gis , (g = 1,..., n)), that is:. M. P. I. i. s. p. =. ∑. g. =. 1. n. β ...
https://genomebiology.biomedcentral.com/articles/10.1186/gb-2006-7-10-r101
*  PSRC - Detection of Novel Cancer Subpopulations Through Integration of Public Microarray Data with Single Cell Gene Expression...
... were used to populate a gene list for subsequent single cell evaluation. High throughput gene expression analysis was performed ... Detection of Novel Cancer Subpopulations Through Integration of Public Microarray Data with Single Cell Gene Expression ... Single cell gene expression analysis represents an attractive approach to investigate complex cell populations such as tumors ... Three distinct subgroups were identified using K-means clustering, and one cluster exhibited increased expression of genes ...
http://ps-rc.org/meeting/abstracts/2015/172.cgi
*  Biomedicines | Free Full-Text | Decoding the Pluripotency Network: The Emergence of New Transcription Factors | HTML
... expression of Dppa3 has been reported to be heterogeneous in both mouse and human ESCs [164,166]. Single cell gene expression ... whereas ectopic expression of Prdm14 suppressed the expression of differentiation genes in embryoid bodies [176], suggesting ... Nanog and Sall4 co-occupied both Nanog and Sall4 enhancer regions in ESCs and activated the gene expression [102]. The direct ... Zscan4 (zinc finger and SCAN domain containing 4) is a novel gene identified in 2007 [147]. The expression of Zscan4 is ...
http://www.mdpi.com/2227-9059/1/1/49/htm
*  Partition decoupling for multi-gene analysis of gene expression profiling data | BMC Bioinformatics | Full Text
As an example of how causative genes can be missed in gene-centric analyses, consider a recent study in which gene expression ... to gene expression microarray data. This method may be used to classify samples based on multi-gene expression patterns and to ... The gene expression data is publicly available and was retrieved from the Gene Expression Omnibus [46] repository under record ... the resulting resampled network is one which has the same marginal gene expression distributions and gene-gene correlations as ...
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-12-497
*  Evaluation of TransPlex Whole Transcriptome Amplification method for microarray gene expression profiling | Archivio...
Evaluation of TransPlex Whole Transcriptome Amplification method for microarray gene expression profiling / C. Peano, M. ... Evaluation of TransPlex Whole Transcriptome Amplification method for microarray gene expression profiling. ... Evaluation of TransPlex Whole Transcriptome Amplification method for microarray gene expression profiling ... The increased use of microarray expression profiling to study both the molecular biology of cancer and the cellular physiology ...
https://air.unimi.it/handle/2434/62290
*  Global Gene Expression Profiling in Retinopathy of Prematurity | IOVS | ARVO Journals
The expression profiles were studied by Gene Expression module (Gx) using the Genome Studio software and statistical analysis ... The present study aimed to identify gene(s) responsible for ROP progression by a global gene expression profiling. ... Global Gene Expression Profiling in Retinopathy of Prematurity Inderjeet Kaur; Sonika Rathi; Subhadra Jalali; Ramesha Kekunaya ... Global Gene Expression Profiling in Retinopathy of Prematurity You will receive an email whenever this article is corrected, ...
http://iovs.arvojournals.org/article.aspx?articleid=2336681
*  JPM | Free Full-Text | Clinical Utility of Gene Expression Profiling Data for Clinical Decision-Making Regarding Adjuvant...
Schuster, S.R.; Pockaj, B.A.; Bothe, M.R.; David, P.S.; Northfelt, D.W. Clinical Utility of Gene Expression Profiling Data for ... Clinical Utility of Gene Expression Profiling Data for Clinical Decision-Making Regarding Adjuvant Therapy in Early Stage, Node ... Clinical Utility of Gene Expression Profiling Data for Clinical Decision-Making Regarding Adjuvant Therapy in Early Stage, Node ... "Clinical Utility of Gene Expression Profiling Data for Clinical Decision-Making Regarding Adjuvant Therapy in Early Stage, Node ...
http://mdpi.com/2075-4426/2/3/71/xml
*  FARO server: Meta-analysis of gene expression by matching gene expression signatures to a compendium of public gene expression...
FARO server: Meta-analysis of gene expression by matching gene expression signatures to a compendium of public gene expression ... it sometimes is blurred by incomplete gene annotation, missing expression response of key genes and secondary gene expression ... BACKGROUND: Although, systematic analysis of gene annotation is a powerful tool for interpreting gene expression data, ... These shortcomings may be partially circumvented by instead matching gene expression signatures to signatures of other ...
http://orbit.dtu.dk/en/publications/faro-server-metaanalysis-of-gene-expression-by-matching-gene-expression-signatures-to-a-compendium-of-public-gene-expression-data
*  An optimized workflow for improved gene expression profiling for formalin-fixed, paraffin-embedded tumor samples | Journal of...
Gene expression profiling classifies individual tumors by their gene expression patterns and may also describe and predict ... Gene expression profiling is a technology for identifying the genes that are active in a given sample of cells or tissue. This ... The 'percentage of genes present' call is a useful tool to evaluate the overall quality of gene expression data. However, if ... For the genes represented by at least two probe sets the analysis of consistency of probe set expression is performed. As an ...
https://jclinbioinformatics.biomedcentral.com/articles/10.1186/2043-9113-3-10
*  Gene Expression Profiling Analysis of Bisphenol A-Induced Perturbation in Biological Processes in ER-Negative HEK293 Cells -...
Gene Expression Profiling Analysis of Bisphenol A-Induced Perturbation in Biological Processes in ER-Negative HEK293 Cells. . ... Gene expression profiling analysis identified a list of differentially expressed genes in response to BPA exposure in HEK293 ... Gene Expression Profiling Analysis of Bisphenol A-Induced Perturbation in Biological Processes in ER-Negative HEK293 Cells. ... Gene Expression Profiling Analysis of Bisphenol A-Induced Perturbation in Biological Processes in ER-Negative HEK293 Cells - ...
http://libros.duhnnae.com/2017/jun8/149838335680-Gene-Expression-Profiling-Analysis-of-Bisphenol-A-Induced-Perturbation-in-Biological-Processes-in-ER-Negative-HEK293-Cells.php
*  Gene expression profiling of meningiomas: current status after a decade of microarray-based transcriptomic studies
... Type. Peer ... MeningiomaMicroarray analysisOligonucleotide array sequence analysisGene expression profiling Collections. * Department of ... We discuss some future prospects and challenges ahead in the field of gene expression profiling. Methods We performed a ... "gene expression profiling". Only original research articles in English that had used RNA hybridized to high-resolution ...
http://bora.uib.no/handle/1956/5216
*  SOAPdenovo-Trans: De novo transcriptome assembly with short RNA-Seq reads. | RNA-Seq Blog
... and two other popular transcriptome assemblers handled such practical issues as alternative splicing and variable expression ... Transcriptome sequencing has long been the favored method for quickly and inexpensively obtaining a large number of gene ... These three types are used to generate a base-resolution expression profile for each gene. Nat Rev Genet 10(1):57-63 (2009) ... EGSEA - easy and efficient ensemble gene set testing. *RNA-Seq discovers genes that repair spinal cord in fish are also in ...
http://www.rna-seqblog.com/soapdenovo-trans-de-novo-transcriptome-assembly-with-short-rna-seq-reads-2/
*  A peripheral blood gene expression score is associated with plaque volume and phenotype by intravascular ultrasound with...
A peripheral blood gene expression score is associated with plaque volume and phenotype by intravascular ultrasound with ... A peripheral blood gene expression score is associated with plaque volume and phenotype by intravascular ultrasound with ... A peripheral blood gene expression score is associated with plaque volume and phenotype by intravascular ultrasound... ... Methods: Peripheral blood gene expression score (GES) was prospectively measured in 18 patients undergoing IVUS/VH. Plaque ...
http://cdt.amegroups.com/article/view/1437
*  Comprehensive Gene Expression Analysis of Prostate Cancer Reveals Distinct Transcriptional Programs Associated with Metastatic...
Gene Expression Analysis Using Oligonucleotide Arrays.. We analyzed gene expression in prostate samples using hybridization of ... Gene expression analysis was carried out using Affymetrix U95 human gene arrays with 63,175 features for individual gene/EST ... serial analysis of gene expression, and other published data verified expression in prostate sample for many genes (10, 11, 12 ... The expression data set was first filtered to include only those probe sets detecting genes with mean expression values that ...
http://cancerres.aacrjournals.org/content/62/15/4499.full