Mukherjee S et al. (2020), Sox17 and β-catenin co-occupy Wnt-responsive en... - Paper
Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network. 2021, Pubmed , Xenbase ... A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs. 2018, Pubmed , ... Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network. Mukherjee S , Chaturvedi ... Lineage specification is governed by gene regulatory networks (GRNs) that integrate the activity of signaling effectors and ...
Zhao H et al. (2012), Homeoprotein hhex-induced conversion of intesti... - Paper
A gene regulatory network controlling hhex transcription in the anterior endoderm of the organizer. 2011, Pubmed , Xenbase Ruiz ... Genes referenced: abcc8 cdx1 cdx2 cdx4 cela1.2 cela1.6 darmin fga foxa2 gcg gnas hhex ins nos1 nos3 nr1h5 odc1 pdia2 pdx1 psmd6 ... Hex homeobox gene-dependent tissue positioning is required for organogenesis of the ventral pancreas. 2004, Pubmed Bort, Hex ... Homeobox gene Hex is essential for onset of mouse embryonic liver development and differentiation of the monocyte lineage. 2000 ...
nodal1 Literature
gene regulatory network through multi-omic data integration., Jansen C, Paraiso KD, Zhou JJ, Blitz IL, Fish MB, Charney RM, Cho ... A gene regulatory program controlling early Xenopus mesendoderm. formation: Network conservation and motifs., Charney RM, ... gene regulatory network., Mukherjee S, Chaturvedi P, Rankin SA, Rankin SA, Fish MB, Wlizla M, Paraiso KD, MacDonald M, Chen X, ... gene network independent of TBP. and TBP. -related factors., Gazdag E, Jacobi UG, van Kruijsbergen I, Weeks DL, Veenstra GJ., ...
bmp4 Literature
gene regulatory network through multi-omic data integration., Jansen C, Paraiso KD, Zhou JJ, Blitz IL, Fish MB, Charney RM, Cho ... Synexpression Gene, Sizzled. , Transcription Is Collectively Modulated by Smad1. and Ventx1. .1/Ventx2.1 in Early Xenopus ... Targeted search for scaling genes reveals matrixmetalloproteinase 3 as a scaler of the dorsal-. ventral. pattern in Xenopus ... Natural size variation among embryos leads to the corresponding scaling in gene expression., Leibovich A, Edri T, Klein SL, ...
Search Literature Results
Gene Regulatory Networks Governing the Generation and Regeneration of Blood., Ciau-Uitz A, Patient R., J Comput Biol. July 1, ... Bim gene dosage is critical in modulating nephron progenitor survival in the absence of microRNAs during kidney development., ... Role of the proline-rich disordered domain of DROSHA in intronic microRNA processing., Son S, Kim B, Yang J, Kim VN., Genes Dev ... Targeted Transcriptomics of Frog Virus 3 in Infected Frog Tissues Reveal Non-Coding Regulatory Elements and microRNAs in the ...
Shabtai Y et al. (2018), Acetaldehyde inhibits retinoic acid biosynthesi... - Paper
The vertebrate Hox gene regulatory network for hindbrain segmentation: Evolution and diversification: Coupling of a Hox gene ... Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. 2002, Pubmed ... Genes referenced: aldh1a1 aldh1a2 aldh1a3 aldh1b1 aldh2 chrd.1 cyp26a1 dhrs3 gsc hoxa1 hoxb1 hoxb4 rdh10 Disease Ontology terms ... regulatory network to hindbrain segmentation is an ancient trait originating at the base of vertebrates. 2017, Pubmed Parés, ...
Yasuoka Y et al. (2014), Occupancy of tissue-specific cis-regulatory mod... - Paper
Xenopus as a model system to study transcriptional regulatory networks. 2005, Pubmed , Xenbase Kuroda, Cloning a novel ... Show Gene links Show Anatomy links Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic ... head organizer genes) while repressing the expression of the posterior/ventral genes (trunk genes) within the same cells. Otx2 ... Expression patterns of head organizer genes (1, 2) and non-head organizer genes (3Y6) are shown in head, notochord, and ...
Wills AE and Baker JC (2015), E2a is necessary for Smad2/3-dependent transcri... - Paper
B) Regulatory regions for eomes, epha4, and xbra were identified from ChIP-seq analysis in Figure 1, and regulatory regions ... Figure 4. E2a Is Required for Dorsal Mesoderm Gene Expression and Binds Directly to These Target Genes (A) qRT-PCRs comparing ... A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate. 2010, Pubmed Meno, ... E and F) Significant overlap exists between genes that are Smad2/3 targets and genes that are downregulated in E2a-depleted ...
Vonica A et al. (2020), Apcdd1 is a dual BMP/Wnt inhibitor in the devel... - Paper
Comprehensive survey of carapacial ridge-specific genes in turtle implies co-option of some regulatory genes in carapace ... Integration of new genes into cellular networks, and their structural maturation. 2014, Pubmed Altschul, Basic local alignment ... Proto-genes and de novo gene birth. 2012, Pubmed Chen, Norrin protected blood-brain barrier via frizzled-4/β-catenin pathway ... Competitive balance of intrabulge BMP/Wnt signaling reveals a robust gene network ruling stem cell homeostasis and cyclic ...
Pan Y et al. (2018), Identification of retinal homeobox (rax) gene-d... - Paper
G-quadruplexes and their regulatory roles in biology. 2016, Pubmed Richard-Parpaillon, The IGF pathway regulates head formation ... Specification of the vertebrate eye by a network of eye field transcription factors. 2003, Pubmed , Xenbase ... Show Gene links Show Anatomy links Identification of retinal homeobox (rax) gene-dependent genes by a microarray approach: The ... Regulation of photoreceptor gene expression by the retinal homeobox (Rx) gene product. 2010, Pubmed , Xenbase Pan, The Rx-like ...