The DrosDel collection : a set of P-element insertions for generating custom chromosomal aberrations in Drosophila melanogaster.
Animals, Chromosome Aberrations, DNA Transposable Elements/*genetics, Drosophila melanogaster/*genetics, Genetic Techniques, ... We have mobilized a pair of engineered P elements, p[RS3] and p[RS5], to collect 3243 lines unambiguously mapped to the ... The collection contains, on average, an element every 35 kb. We demonstrate the utility of the collection for generating custom ... The DrosDel collection: a set of P-element insertions for generating custom chromosomal aberrations in Drosophila melanogaster. ...http://umu.diva-portal.org/smash/record.jsf?pid=diva2:156500
Calcium-Activated Potassium (KCa) Channels | High-Throughput Screen for the Chemical Inhibitors
Background In contrast to DNA-mediated transposable elements (TEs), retrotransposons, particularly non-long November 15, 2017. ... Background In contrast to DNA-mediated transposable elements (TEs), retrotransposons, particularly non-long terminal repeat ... TM = % DNA within the tail TL, where % of DNA within the tail = tail region (TA) tail region AM095 Sodium Salt strength (TAI) ... The VPI 11088 operon was localized in the chromosome close to the insertion element ISoperon from a partial collection of VPI ...http://acancerjourney.info/index.php/category/calcium-activated-potassium-kca-channels/
Evolutionary implications of multiple SINE insertions in an intronic region from diverse mammals, Mammalian Genome | 10.1007...
Perspective: transposable elements, parasitic DNA, and genome evolution. Kidwell, MG; Lisch, DR ... Two mutations in a maize bronze-1 allele caused by transposable elements of the Ac-Ds family alter the quantity and quality of ... Alu elements and hominid phylogenetics. Salem, AH; Ray, DA; Xing, JC; Callinan, PA; Myers, JS; Hedges, DJ; Garber, PK; ... An ancient retrovirus-like element contains hot spots for SINE insertion. Cantrell, MA; Filanoski, BJ; Ingermann, AR; Olsson, K ...https://www.deepdyve.com/lp/springer_journal/evolutionary-implications-of-multiple-sine-insertions-in-an-intronic-ZMEWFVER70
Faculty Research Page | Department of Molecular & Cell Biology
... the mechanisms used to mobilize transposable DNA elements (a process called transposition) and how RNA binding proteins control ... Our research focuses on the P element family of transposable elements found in the fruit fly, Drosophila melanogaster. P ... P transposable elements in Drosophila and other organisms. Majumdar, S. and Rio, D.C. (2015). ASM Press. Online in: Microbiol ... The human THAP9 gene encodes an active P element DNA transposase. Majumdar, S., Singh, A. and Rio, D.C. Science, 339, 446-448. ...http://mcb.berkeley.edu/faculty/GEN/riod.html
DNA Transposable Elements - Element, IS Summary Report | CureHunter
DNA transposable elements include bacterial IS (insertion sequence) elements, Tn elements, the maize controlling elements Ac ... and Ds, Drosophila P, gypsy, and pogo elements, the human Tigger elements and the Tc and mariner elements which are found ... Discrete segments of DNA which can excise and reintegrate to another site in the genome. Most are inactive, i.e., have not been ... Element, IS; Elements, IS; Transposable Elements; IS Element; Transposable Element; DNA Transposable Element; Elements, ...http://www.curehunter.com/public/keywordSummaryD004251-DNA-Transposable-Elements-Element--IS.do
KAKEN - Research Projects | Transposition and gene regulation of DNA transposable elements in plants (KAKENHI-PROJECT-10216208)
The major DNA-based controlling transposable elements in higher plants can be classified into three groups : the Ac/Ds (or hAT ... Transposition and gene regulation of DNA transposable elements in plants. Research Project ... Publications] S. Takahashi: 'Capturing of a genomic HMG domain sequence by an En/Spm related transposable element Tpnl in the ... Publications] S.Takahashi: 'Capturing of a genomic HMG domain sequence by an En/Spm related transposable element Tpnl in the ...https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-10216208/
'mobile' DNA: transposable elements - ppt...
Transposable elements Discrete sequences in the genome that have the ability to translocate or copy itself across to other ... 5 Classes of transposable elements. Classes of mobile elements. DNA transposons, e.g., Tc-1/mariner, have inverted terminal ... Transposable Elements (Transposons) DNA elements capable of moving ("transposing") about the genome Discovered by Barbara ... Download ppt "'mobile' DNA: transposable elements" * Ppt on palliative care pain management end of life care Ppt on power ...http://slideplayer.com/slide/781310/
Transposable Elements (TEs) in Chromosomal DNA - Irina Arkhipova
... Research in the Arkhipova lab is focused on transposable ... elements (TEs) in chromosomal DNA. As part of the A. vaga genome sequencing consortium, we have analyzed repetitive DNA content ... 3% of genomic DNA). This is in contrast with other aquatic metazoans such as Hydra or Nematostella, where TEs make up 57% and ... On balance, bdelloid genomes, despite being relatively open to assimilation of foreign DNA, are apparently able to control ...http://www.mbl.edu/jbpc/transposable-elements-tes-in-chromosomal-dna-irina-arkhipova/
DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape. - Canada...
Examination of genome-wide DNA methylation status within 928 TE subfamilies in human embryonic and adult tissues identified ... derived sequences comprise half of the human genome and DNA methylome and are presumed to be densely methylated and inactive. ... You are here: Home / Platforms / Scientific Publications / DNA hypomethylation within specific transposable element families ... Home › Platforms › Scientific Publications › DNA hypomethylation within specific transposable element families associates with ...http://www.bcgsc.ca/platform/publications/dna-hypomethylation-within-specific-transposable-element-families-associates-with-tissue-specific-enhancer-landscape
A dispersed family of repetitive DNA sequences exhibits characteristics of a transposable element in the genus Lycopersicon. |...
A dispersed family of repetitive DNA sequences exhibits characteristics of a transposable element in the genus Lycopersicon.. R ... A dispersed family of repetitive DNA sequences exhibits characteristics of a transposable element in the genus Lycopersicon.. R ... A dispersed family of repetitive DNA sequences exhibits characteristics of a transposable element in the genus Lycopersicon.. R ... A dispersed family of repetitive DNA sequences exhibits characteristics of a transposable element in the genus Lycopersicon. ...http://www.genetics.org/content/137/2/581
Characterization of the maize Mutator transposable element MURA transposase as a DNA-binding protein. | Molecular and Cellular...
Characterization of the maize Mutator transposable element MURA transposase as a DNA-binding protein.. M I Benito, V Walbot ... The autonomous MuDR element of the Mutator (Mu) transposable element family of maize encodes at least two proteins, MURA and ... Characterization of the maize Mutator transposable element MURA transposase as a DNA-binding protein. ... Characterization of the maize Mutator transposable element MURA transposase as a DNA-binding protein. ...https://mcb.asm.org/content/17/9/5165?ijkey=758fff198af145413cfa9238acf24504b5292a36&keytype2=tf_ipsecsha
Exam 2: Lecture .5 Flashcards by Erin Rowland | Brainscape
DNA Transposable Elements (Increase Elements) -can do this by moving out of hemi-methylated DNA (newly replicated) into dually ... structurally similar to DNA transposons: the ends of the element contain repeated DNA sequences and the body of the element ... transposable elements insert themselves randomly in the genome. -if an element drops into and disrupts a coding sequence (exon ... can synthesize a DNA strand from a mRNA template. -normal cellular DNA polymerases cannot do this task. ...https://www.brainscape.com/flashcards/exam-2-lecture-5-1869930/packs/3362161
Pack-MULE transposable elements mediate gene evolution in plants. - PubMed - NCBI
About 5% of the Pack-MULEs are represented in collections of complementary DNA. Functional analysis of amino acid sequences and ... Pack-MULE transposable elements mediate gene evolution in plants.. Jiang N1, Bao Z, Zhang X, Eddy SR, Wessler SR. ... Mutator-like transposable elements (MULEs) are found in many eukaryotic genomes and are especially prevalent in higher plants. ... These chimaeric elements are called Pack-MULEs in this study. The abundance of MULEs in rice and the availability of most of ...https://www.ncbi.nlm.nih.gov/pubmed/15457261
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery. - PubMed - NCBI
DNA Transposable Elements. Grant support. *U01HG005209-02/HG/NHGRI NIH HHS/United States ... The length distribution of true positive and false negative mobile element insertion predictions for Alu elements. Note that ... suggests a large deletion if the annotated repeat element is not considered. ...https://www.ncbi.nlm.nih.gov/pubmed/20529927
bio chap 13 Flashcards by jake sweet | Brainscape
a class of transposable elements that replicate and transpose via DNA replication and repair. ... Sequence motifs are only found in DNA―they do not occur in RNA.. When sequence motifs occur in DNA, they are only found ... The region of DNA sequences before the start of a gene is often called the promoter. One type of promoter is called the TATA ... In the eukaryotic DNA sequence below, which type of repeat is highlighted?. CACACACACACACACA CACACACACACACACACACACA ...https://www.brainscape.com/flashcards/bio-chap-13-2920989/packs/3294873
Characterization of multiple lineages of Tc1-like elements within the genome of the amphibian Xenopus tropicalis. - Semantic...
... tropicalis genome combined with a degenerated PCR approach to identify multiple lineages of Tc1 related transposable elements. ... Full-length elements were isolated in each lineage and were characterized. Most of them exhibit the typical characteristics of ... copies containing an intact transposase ORF suggesting that these elements may still be active. ... Tc1-like elements (TLEs). An open reading frame (ORF) encoding a 340-350 aa transposase containing a [D, D(34)E] signature was ...https://www.semanticscholar.org/paper/Characterization-of-multiple-lineages-of-Tc1-like-Sinzelle-Pollet/032c9a6c46923ce970254b1d3360304a863f47b5
Pankaj K. Agarwal, RJR Nabisco Professor of Computer Science and Professor of Mathematics and Chair of Computer Science and...
DNA Transposable Elements • Ecology • Ecosystem • Forecasting • Models, Biological • Models, Chemical • Models, Molecular • ... DNA • Sequence Analysis, Protein • Software • Species Specificity • Stochastic Processes • Time Factors • Visibility. Postdocs ...http://fds.duke.edu/db/aas/math/faculty/pankaj
Detection and Quantification of Mosaic Genomic DNA Variation in Primary Somatic Tissues Using ddPCR: Analysis of Mosaic...
... to validate and quantify somatic mosaic events contributed by transposable-element insertions, copy-number... ... Analysis of Mosaic Transposable-Element Insertions, Copy-Number Variants, and Single-Nucleotide Variants. In: Karlin-Neumann G ... In the ddPCR assay, sample or template DNA is partitioned into tens of thousands of individual droplets such that when DNA ... Analysis of Mosaic Transposable-Element Insertions, Copy-Number Variants, and Single-Nucleotide Variants. ...https://link.springer.com/protocol/10.1007%2F978-1-4939-7778-9_11
Development of stable reporter system cloning luxCDABE genes into chromosome of Salmonella enterica serotypes using Tn7...
DNA Transposable Elements*. Food Contamination / analysis. Food Handling. Genes, Reporter*. Luciferases / genetics, metabolism* ... Chang AC,Cohen SN,Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic ... for providing us with Photorhabdus luminescens genomic DNA. We acknowledge Dr. Scott Willard and Dr. Peter Ryan for use of the ...http://www.biomedsearch.com/nih/Development-stable-reporter-system-cloning/20653968.html
MEDLINE - Resultado p gina 1
0 (DNA Transposable Elements). 9 / 32 MEDLINE seleciona para imprimir Fotoc pia. ... a central DNA methyltransferase domain and C-terminal DNA recognition domain. The endonuclease cuts the two DNA strands at one ... E-plus)- or (E-minus)-helpers that differ in the presence of the trans-acting E element are used to achieve the proper mini-Mu ... The MmeI R-M system thus uses modification on only one of the two DNA strands for host protection. The MmeI architecture ...http://bases.bireme.br/cgi-bin/wxislind.exe/iah/online/?IsisScript=iah/iah.xis&nextAction=lnk&base=MEDLINE&lang=p&format=standard.pft&indexSearch=EX&exprSearch=B03.440.400.425.525.520.500
Two views of the same region of the Mauve 2.0 alignment | Open-i
DNA Transposable Elements. *Enterobacteriaceae Infections/diagnosis/prevention & control/therapy. *Genomics. *Internet. * ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2238966_gkm973f1&req=4
Klebsiella phylogeny.Tree for 108 genomes based on a 2. | Open-i
DNA Transposable Elements*. *Genome, Bacterial*. *Klebsiella pneumoniae/enzymology/genetics*. *Recombination, Genetic*. *beta- ... None of the eleven full copies of IS26, the most frequent IS element in the genome, had the expected 8-bp direct repeat of the ... None of the eleven full copies of IS26, the most frequent IS element in the genome, had the expected 8-bp direct repeat of the ... To elucidate the evolution of this rich repertoire, the mobile elements of the genome were characterized, including four ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC4048246_pone.0099209.g001&req=4
Genome-Wide Prediction of Nucleosome Occupancy in Maize Reveals Plant Chromatin Structural Features at Genes and Other Elements...
NOL plots for notable repeat elements in the maize genome. Three classes of elements are shown: DNA transposable elements, ... The DNA transposable elements Activator (Ac), Suppressor-mutator (Spm), Mutator (Mu), and a representative mutator-like element ... Sequences for DNA transposable elements were downloaded from GenBank (Ac, AF355378.1; MuDR, M76978.1; and SPM Saedler, M25427 ... we produced NOL plots for some of the most common DNA transposable elements and retroelements using exemplar or published ...http://www.plantphysiol.org/content/162/2/1127.long
benign cartilaginous tumor 2005:2010[pubdate] *count=100 - BioMedLib™ search engine
Chromosomes, Human, Pair 6. DNA Transposable Elements. Fibroma / genetics. Nasal Cavity. Nose Neoplasms / genetics. ... A22.214.171.124.3. Element, Ion, or Isotope. A1.4.2. Body Substance. A1.4.3. Food. A2. Conceptual Entity. A2.1. Idea or Concept. A2.1. ... DNA, Neoplasm / analysis. Female. Humans. Immunohistochemistry. Male. Middle Aged. Polymerase Chain Reaction. Prognosis. ... Many tumor cells had characteristics of osteoblastic and chondroblastic elements producing osteoid, osseous, and cartilaginous ...http://www.bmlsearch.com/?kwr=benign+cartilaginous+tumor+2005:2010%5Bpubdate%5D&cxts=100&stmp=b0
The developmental control of transposable elements and the evolution of higher species. - Semantic Scholar
TEs are subject to tight epigenetic control during the earliest phases of embryonic development via histone and DNA methylation ... As a consequence, mobile elements and their controllers exert a marked influence on transcriptional networks in embryonic stem ... Transposable elements (TEs) account for at least 50% of the human genome. They constitute essential motors of evolution through ... Transposable elements (TEs) account for at least 50% of the human genome. They constitute essential motors of evolution through ...https://www.semanticscholar.org/paper/The-developmental-control-of-transposable-elements-Friedli-Trono/d1c0d02d756889d74f2ea5471ec804fc20ec8071