miR-129-2 suppresses proliferation and migration of esophageal carcinoma cells through downregulation of SOX4 expression
The human DNA fragment containing the 3′-UTR segments of SOX4 mRNA containing the miR-129-2 binding sites were PCR amplified ... Liao YL, Sun YM, Chau GY, et al: Identification of SOX4 target genes using phylogenetic footprinting based prediction from ... Pan X, Zhao J, Zhang WN, et al: Induction of SOX4 by DNA damage is critical for p53 stabilization and function. Proc Natl Acad ... It has been well known that SOX4 binds to the 7-bp DNA-motif AACAAAG, and transcriptionally activates its target genes (17,18 ...
October | 2023 | GSK3 Inhibitors
DNA-PK Elvitegravir inhibitor inhibitors ITMN-191 LY-411575 LY294002 PI3K Inhibitors RAD001 selleckchem SNX-5422 UNC0638 ... In this study, many of us combined GeF-seq (genome footprinting along with high-throughput sequencing) along with ... Energy Conductivity involving B-DNA.. Posted on October 30, 2023. by gsk33759 ...
DeCS - Términos Nuevos
DNA, RIBOSOMAL SPACER. DNA ESPAÇADOR RIBOSSÔMICO. ESPECTROMETRIA DE MASA POR IONIZACION DE ELECTROSPRAY. SPECTROMETRY, MASS, ... PROTEIN FOOTPRINTING. PEGADAS DE PROTEÍNAS. HUESO ESCAFOIDES. SCAPHOID BONE. OSSO ESCAFÓIDE. IMAGEN TRIDIMENSIONAL. IMAGING, ... BRANCHED DNA SIGNAL AMPLIFICATION ASSAY. ENSAIO DE AMPLIFICAÇÃO DE SINAL DE DNA RAMIFICADO. ... DNA, CATALYTIC. DNA CATALÍTICO. ADN INTERGENICO. DNA, INTERGENIC. DNA INTERGÊNICO. ALFA-DEFENSINAS. ALPHA-DEFENSINS. ALFA- ...
Track Data Hubs
Digital genomic footprinting from 243 cell & tissue types hg38. DNA Methylation Hundreds of analyzed methylomes from bisulfite ... UCD DNA methylation data [+] hg19, hg18, mm10, mm9, bosTau7, bosTau6, canFam3...[-]. hg19, hg18, mm10, mm9, bosTau7, bosTau6, ... UniBind 2021 hub for robust direct TF-DNA interactions [+] hg38, mm10, ce11, dm6, danRer11, sacCer3, rn6, araTha1...[-]. hg38, ... UniBind 2021 hub for permissive direct TF-DNA interactions [+] hg38, mm10, ce11, dm6, danRer11, spo2, sacCer3, rn6...[-]. hg38 ...
Track Data Hubs
Digital genomic footprinting from 243 cell & tissue types hg38. DNA Methylation Hundreds of analyzed methylomes from bisulfite ... UniBind 2021 hub for robust direct TF-DNA interactions [+] hg38, mm10, ce11, dm6, danRer11, sacCer3, rn6, araTha1...[-]. hg38, ... UniBind 2021 hub for permissive direct TF-DNA interactions [+] hg38, mm10, ce11, dm6, danRer11, spo2, sacCer3, rn6...[-]. hg38 ... ENCODE DNA Trackhub ERROR: TCP non-blocking connect() to api.wenglab.org IP 205.172.168.60 timed-out in select() after 10000 ...
Track Data Hubs
Digital genomic footprinting from 243 cell & tissue types hg38. DNA Methylation Hundreds of analyzed methylomes from bisulfite ... UniBind 2021 hub for robust direct TF-DNA interactions [+] hg38, mm10, ce11, dm6, danRer11, sacCer3, rn6, araTha1...[-]. hg38, ... UniBind 2021 hub for permissive direct TF-DNA interactions [+] hg38, mm10, ce11, dm6, danRer11, spo2, sacCer3, rn6...[-]. hg38 ... ENCODE DNA Trackhub ERROR: TCP non-blocking connect() to api.wenglab.org IP 205.172.168.60 timed-out in select() after 10000 ...
Track Data Hubs
Digital genomic footprinting from 243 cell & tissue types hg38. DNA Methylation Hundreds of analyzed methylomes from bisulfite ... ENCODE DNA Trackhub ENCODE Trackhub for DNA-based assays hg19, hg38, mm10. ... UniBind 2021 hub for robust direct TF-DNA interactions [+] hg38, mm10, ce11, dm6, danRer11, sacCer3, rn6, araTha1...[-]. hg38, ... UniBind 2021 hub for permissive direct TF-DNA interactions [+] hg38, mm10, ce11, dm6, danRer11, spo2, sacCer3, rn6...[-]. hg38 ...
Track Data Hubs
Digital genomic footprinting from 243 cell & tissue types hg38. DNA Methylation Hundreds of analyzed methylomes from bisulfite ... ENCODE DNA Trackhub ENCODE Trackhub for DNA-based assays hg19, hg38, mm10. ... UCD DNA methylation data [+] hg19, hg18, mm10, mm9, bosTau7, bosTau6, canFam3...[-]. hg19, hg18, mm10, mm9, bosTau7, bosTau6, ... UniBind 2021 hub for robust direct TF-DNA interactions [+] hg38, mm10, ce11, dm6, danRer11, sacCer3, rn6, araTha1...[-]. hg38, ...
human biology - Why should we use the NA12878 dataset for benchmarking? - Biology Stack Exchange
That way, people can click on it and see that you are referring to a DNA sequencing sample and can look up information about it ... Digital Genomic Footprinting for ENCODE 5. What species have had their genomes sequenced/are being sequenced? ... This is like explaining DNA for any question related to genetics. Prior knowledge is assumed and required for most questions in ... NA12878 is a fairly old to geneticists and her DNA is included in multiple legacy projects, specifically HapMap. ...
Biblio | College of Agricultural Sciences
J. Singer-Sam, LeBon, J. M., Tanguay, R. L., and Riggs, A. D., "A quantitative HpaII-PCR assay to measure methylation of DNA ... R. L. Tanguay, Pfeifer, G. P., and Riggs, A. D., "PCR-aided DNaseI footprinting of single copy gene sequences in permeabilized ... comparison of active and inactive X chromosomal DNA at the CpG island and promoter of human PGK-1.", Genes Dev, vol. 4, no. 8, ...
Discovery and characterization of Alu repeat sequences via precise local read assembly.下载|翻译|阅读
Two distinct overstretched DNA states. abstract::The DNA double helix undergoes an overstretching transition in a narrow ... A region of 1.1 kb immediately 5 to the transcription start site was analyzed in detail by sequencing, DNase 1 footprinting, ... abstract::The antigene strategy based on site-specific recognition of duplex DNA by triplex DNA formation has been exploited in ... abstract::Chromosomes in vertebrates are protected at both ends by telomere DNA composed of tandem (TTAGGG)n repeats. DNA ...
Partners
It is developing methods and projects for the exploitation of biodiversity, in particular with respect to massive DNA ... Quantis offers cutting-edge services in environmental footprinting, eco-design, sustainable supply chains and environmental ... Techniques developed for this relate to classical chemistry, NIR spectroscopy, DNA based and microbiological technologies. ... DNA based) as well as with rapid methods (flow cytometry) for bacteria identification and enumeration. ...
Aptamer Group opens new state-of-the-art laboratories
1 - Lx21 trading strategy
Footprinting has also been accomplished with other nucleases, with dimeth- ylsulfate (which acts on A and C), with ... Plasma cytomegalovirus DNA, pp65 antigenemia and a low CD4 cell count remain risk factors for cytomegalovirus disease in ... A thymine residue can strategg included at the 3 end of each primer to ensure DNA polymerase extension of a bound primer that ... and the lx211 of the DNA of the organism despite aggressive antibiotic therapy. ...
Biblio | College of Agricultural Sciences
J. Singer-Sam, LeBon, J. M., Tanguay, R. L., and Riggs, A. D., "A quantitative HpaII-PCR assay to measure methylation of DNA ... R. L. Tanguay, Pfeifer, G. P., and Riggs, A. D., "PCR-aided DNaseI footprinting of single copy gene sequences in permeabilized ... comparison of active and inactive X chromosomal DNA at the CpG island and promoter of human PGK-1.", Genes Dev, vol. 4, no. 8, ...
Biblio | College of Agricultural Sciences
J. Singer-Sam, LeBon, J. M., Tanguay, R. L., and Riggs, A. D., "A quantitative HpaII-PCR assay to measure methylation of DNA ... R. L. Tanguay, Pfeifer, G. P., and Riggs, A. D., "PCR-aided DNaseI footprinting of single copy gene sequences in permeabilized ... comparison of active and inactive X chromosomal DNA at the CpG island and promoter of human PGK-1.", Genes Dev, vol. 4, no. 8, ...
Transformation of regular cloned rat embryo fibroblast (CREF) cells with cellular - The Aurora Kinases in Cancer therapy
Publications 2013 | CHESS
Bohon J, DMello R, Ralston C, Guptac S, Chance M, "Synchrotron X-ray footprinting on tour," J. Synchrotron Rad. (2014), 21, ( ... Ummat, "A Structural Studies on human DNA polymerase Eta A novel therapeutic target," Ph.D. Thesis, Mount Sinai School of ... Tan JS, "Rational design of DNA as a nanoscale organizer," Ph.D. Thesis, Cornell University, Advisor: Dan Luo (2013). ... "Polyelectrolyte properties of single stranded DNA measured using SAXS and single molecule FRET: Beyond the wormlike chain model ...
DeCS - Termos Novos
DNA CATALÍTICO. DNA, CATALYTIC. ADN CATALITICO. DNA ESPAÇADOR RIBOSSÔMICO. DNA, RIBOSOMAL SPACER. ESPACIADOR RIBOSOMICO DE ADN ... PROTEIN FOOTPRINTING. HUELLA DE PROTEINA. PEPTÍDIOS CATIÔNICOS ANTIMICROBIANOS. ANTIMICROBIAL CATIONIC PEPTIDES. PEPTIDOS ... DNA INTERGÊNICO. DNA, INTERGENIC. ADN INTERGENICO. DOENÇAS TRANSMISSÍVEIS EMERGENTES. COMMUNICABLE DISEASES, EMERGING. ... ENSAIO DE AMPLIFICAÇÃO DE SINAL DE DNA RAMIFICADO. BRANCHED DNA SIGNAL AMPLIFICATION ASSAY. ENSAYO DE AMPLIFICACION DE SEÑAL DE ...
DeCS - Termos Novos
DNA CATALÍTICO. DNA, CATALYTIC. ADN CATALITICO. DNA ESPAÇADOR RIBOSSÔMICO. DNA, RIBOSOMAL SPACER. ESPACIADOR RIBOSOMICO DE ADN ... PROTEIN FOOTPRINTING. HUELLA DE PROTEINA. PEPTÍDIOS CATIÔNICOS ANTIMICROBIANOS. ANTIMICROBIAL CATIONIC PEPTIDES. PEPTIDOS ... DNA INTERGÊNICO. DNA, INTERGENIC. ADN INTERGENICO. DOENÇAS TRANSMISSÍVEIS EMERGENTES. COMMUNICABLE DISEASES, EMERGING. ... ENSAIO DE AMPLIFICAÇÃO DE SINAL DE DNA RAMIFICADO. BRANCHED DNA SIGNAL AMPLIFICATION ASSAY. ENSAYO DE AMPLIFICACION DE SEÑAL DE ...
DeCS - Termos Novos
DNA CATALÍTICO. DNA, CATALYTIC. ADN CATALITICO. DNA ESPAÇADOR RIBOSSÔMICO. DNA, RIBOSOMAL SPACER. ESPACIADOR RIBOSOMICO DE ADN ... PROTEIN FOOTPRINTING. HUELLA DE PROTEINA. PEPTÍDIOS CATIÔNICOS ANTIMICROBIANOS. ANTIMICROBIAL CATIONIC PEPTIDES. PEPTIDOS ... DNA INTERGÊNICO. DNA, INTERGENIC. ADN INTERGENICO. DOENÇAS TRANSMISSÍVEIS EMERGENTES. COMMUNICABLE DISEASES, EMERGING. ... ENSAIO DE AMPLIFICAÇÃO DE SINAL DE DNA RAMIFICADO. BRANCHED DNA SIGNAL AMPLIFICATION ASSAY. ENSAYO DE AMPLIFICACION DE SEÑAL DE ...
DeCS - Termos Novos
DNA CATALÍTICO. DNA, CATALYTIC. ADN CATALITICO. DNA ESPAÇADOR RIBOSSÔMICO. DNA, RIBOSOMAL SPACER. ESPACIADOR RIBOSOMICO DE ADN ... PROTEIN FOOTPRINTING. HUELLA DE PROTEINA. PEPTÍDIOS CATIÔNICOS ANTIMICROBIANOS. ANTIMICROBIAL CATIONIC PEPTIDES. PEPTIDOS ... DNA INTERGÊNICO. DNA, INTERGENIC. ADN INTERGENICO. DOENÇAS TRANSMISSÍVEIS EMERGENTES. COMMUNICABLE DISEASES, EMERGING. ... ENSAIO DE AMPLIFICAÇÃO DE SINAL DE DNA RAMIFICADO. BRANCHED DNA SIGNAL AMPLIFICATION ASSAY. ENSAYO DE AMPLIFICACION DE SEÑAL DE ...
DeCS - Termos Novos
DNA CATALÍTICO. DNA, CATALYTIC. ADN CATALITICO. DNA ESPAÇADOR RIBOSSÔMICO. DNA, RIBOSOMAL SPACER. ESPACIADOR RIBOSOMICO DE ADN ... PROTEIN FOOTPRINTING. HUELLA DE PROTEINA. PEPTÍDIOS CATIÔNICOS ANTIMICROBIANOS. ANTIMICROBIAL CATIONIC PEPTIDES. PEPTIDOS ... DNA INTERGÊNICO. DNA, INTERGENIC. ADN INTERGENICO. DOENÇAS TRANSMISSÍVEIS EMERGENTES. COMMUNICABLE DISEASES, EMERGING. ... ENSAIO DE AMPLIFICAÇÃO DE SINAL DE DNA RAMIFICADO. BRANCHED DNA SIGNAL AMPLIFICATION ASSAY. ENSAYO DE AMPLIFICACION DE SEÑAL DE ...
DeCS - Termos Novos
DNA CATALÍTICO. DNA, CATALYTIC. ADN CATALITICO. DNA ESPAÇADOR RIBOSSÔMICO. DNA, RIBOSOMAL SPACER. ESPACIADOR RIBOSOMICO DE ADN ... PROTEIN FOOTPRINTING. HUELLA DE PROTEINA. PEPTÍDIOS CATIÔNICOS ANTIMICROBIANOS. ANTIMICROBIAL CATIONIC PEPTIDES. PEPTIDOS ... DNA INTERGÊNICO. DNA, INTERGENIC. ADN INTERGENICO. DOENÇAS TRANSMISSÍVEIS EMERGENTES. COMMUNICABLE DISEASES, EMERGING. ... ENSAIO DE AMPLIFICAÇÃO DE SINAL DE DNA RAMIFICADO. BRANCHED DNA SIGNAL AMPLIFICATION ASSAY. ENSAYO DE AMPLIFICACION DE SEÑAL DE ...
DeCS - Termos Novos
DNA CATALÍTICO. DNA, CATALYTIC. ADN CATALITICO. DNA ESPAÇADOR RIBOSSÔMICO. DNA, RIBOSOMAL SPACER. ESPACIADOR RIBOSOMICO DE ADN ... PROTEIN FOOTPRINTING. HUELLA DE PROTEINA. PEPTÍDIOS CATIÔNICOS ANTIMICROBIANOS. ANTIMICROBIAL CATIONIC PEPTIDES. PEPTIDOS ... DNA INTERGÊNICO. DNA, INTERGENIC. ADN INTERGENICO. DOENÇAS TRANSMISSÍVEIS EMERGENTES. COMMUNICABLE DISEASES, EMERGING. ... ENSAIO DE AMPLIFICAÇÃO DE SINAL DE DNA RAMIFICADO. BRANCHED DNA SIGNAL AMPLIFICATION ASSAY. ENSAYO DE AMPLIFICACION DE SEÑAL DE ...
Publications - the Huang lab
Transcriptome-scale RNase-footprinting of RNA-protein complexes. Zhe Ji, Ruisheng Song, Hailiang Huang, Aviv Regev, and Kevin ... These associations are preferentially located in non-coding DNA regions and in particular in tissue-specific DNase I ... "Transcriptome-scale RNase-footprinting of RNA-protein complexes." Nat Biotechnol, 34, 4, Pp. 410-3. Abstract. Ribosome ... and responding to DNA damage. Here we present HistoneHits, a database of phenotypes for systematic collections of histone ...
scATAC-seq data integration • Signac
We will integrate the two datasets together using the shared DNA accessibility assay, using tools available in the Seurat ... Transcription factor footprinting * Data visualization * Parallel computing * Data structures and object interaction ... Here we demonstrate transferring the gene expression values from the PBMC multiome dataset (that measured DNA accessibility and ... One dataset was generated using the 10x Genomics multiome technology, and includes DNA accessibility and gene expression ...
Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns" | BMC Bioinformatics | Full Text
Swinger KK, Rice PA: IHF and HU: flexible architects of bent DNA. Curr Opin Struct Biol 2004, 14: 28-35. 10.1016/j.sbi.2003.12. ... Murtin C, Engelhorn M, Geiselmann J, Boccard F: A quantitative UV laser footprinting analysis of the interaction of IHF with ... Gutierrez G, Oliver JL, Marin A: On the origin of the periodicity of three in protein coding DNA sequences. J Theor Biol 1994, ... Peng CK, Buldyrev SV, Havlin S, Simons M, Stanley HE, Goldberger AL: Mosaic organization of DNA nucleotides. Phys Rev E Stat ...