Plant DNA methylation is sensitive to parent seed N content and influences the growth of rice | BMC Plant Biology | Full Text
We suggest that the parent seed nitrogen content decreased induced DNA methylation changes at the epigenetic level and ... DNA methyltransferases expression influenced by parent seed N content. The change in total mC levels and the massive ... Ahmad F, Huang X, Lan H, Huma T, Zhang H. Comprehensive gene expression analysis of the DNA (cytosine-5) methyltransferase ... 2019) reported that cadmium and copper both could induce the upregulation of the DNA methyltransferases CMT3 and DRM2 in ...
DNMT3B, Active(D353-380BG) - SignalChem Online Store
... methyltransferase 3 beta encodes a DNA methyltransferase which is thought to function in de novo methylation, rather than ... Scientific Background :DNMT3B or DNA (cytosine-5-)- ... 2. Okano, M. et al: DNA methyltransferase Dnmt3a and Dnmt3b are ... 1. Yanagisawa, Y. et al: The human DNA methyltransferases DNMT3A and DNMT3B have two types of promoters with different CpG ... DNMT3B can methylate unmethylated and hemimethylated DNA with equal efficiencies (1). DNMT3B localizes primarily to the nucleus ...
RFA-CA-03-016: DIET, DNA METHYLATION AND OTHER EPIGENETIC EVENTS, AND CANCER PREVENTION
DNA METHYLATION AND OTHER EPIGENETIC EVENTS, AND CANCER PREVENTION RFA-CA-03-016. NCI ... Continued studies of the connections between DNA methylation and chromatin structure and the DNA methyltransferase-associated ... The Dnmts are a family of enzymes that catalyze the transfer of methyl groups from SAM to cytosine residues in DNA. This ... Additionally, various regulatory factors interacting with the DNA methyltransferases may direct them to specific DNA sequences ...
DNMT1 Deficiency Impacts on Plasmacytoid Dendritic Cells in Homeostasis and Autoimmune Disease. - Oxford Stem Cell Institute
We provide clonal in vivo evidence for DC lineage establishment at the stem cell level, and we show that a high DNA methylation ... This study shows how DNA methylation regulates the production of DC subsets and provides a potential rationale for targeting ... we show that distinct DNA methylation levels and patterns are required for the development of plasmacytoid DC and conventional ... By combining whole-genome methylation assessment with the analysis of mice expressing reduced DNA methyltransferase 1 levels, ...
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Trapped in action: direct visualization of DNA methyltransferase activity in living cells. - Oxford Neuroscience
This trapping assay monitors kinetic properties and activity-dependent immobilization of DNA methyltransferases in their native ... we developed a trapping assay using transiently expressed fluorescent DNA methyltransferase 1 (Dnmt1) fusions and mechanism- ... possible to directly compare mutations and inhibitors that affect regulation and catalytic activity of DNA methyltransferases ... To study the regulation of DNA methylation in living cells, ... DNA methyltransferases have a central role in the complex ...
Cale vs. culture time (12, 24, or 48 h), whereas the star plots (B, D, | SCD Inhibitors scdinhibitor.com
With respect to DNA modification, DNA (cytosine-5)-methyltransferase 1 (DNMT1) expression was ten.4 higher at 48 h and those of ... DNA methyltransferase 1-associated protein 1 (DMAP1) and methyl-CpG binding domain 4 (MBD4) were 18.two and 15.9 higher at 24 h ... 3A and 3B). These outcomes suggest pamidronate increased histone and DNA methylation and subsequently hindered DNA ...
MicroRNAs and epithelial-mesenchymal transition in prostate cancer | Oncotarget
DNA (Cytosine-5-)-Methyltransferase 3 Beta) and Akt3 (v-Akt Murine Thymoma Viral Oncogene Homolog 3) [96]. ... miR-145 expression is controlled by DNA hypermethylation and tumor suppressor p53 in PCa [65, 69]. WT-p53 upregulates the ... MicroRNA-145 is regulated by DNA methylation and p53 gene mutation in prostate cancer. Carcinogenesis. 2011; 32: 772-778. ... 2015; 65: 5-29.. 4. Jaiswal S, Sarmad R, Arora S, Dasaraju R, Sarmad K. Prostate Cancer for the Internist. N Am J Med Sci. 2015 ...
Methylation adjustments in dna are likely involved nearly the same as - multidrug resistance by tyrosine kinase inhibitors in...
Inhibition of tumorigenesis by way of a cytosine-dna, methyltransferase, antisense oligodeoxynucleotide. Proc Natl Acad Sci U S ... Inhibition of dna methyltransferase inhibits dna replication. J Biol Chem. 2000;275:17986C90. [PubMed] 26. Szyf M, Pakneshan P ... MacLeod AR, Szyf M. Manifestation of antisense to dna methyltransferase mrna induces dna demethylation and inhibits ... Elevated cytosine dnaC methyltransferase activity during cancer of the colon development. J Natl Cancers Inst. 1993;85:1235C40 ...
GO:0007186 G protein-coupled receptor signaling pathway AnnotationPropagation P GO:0004930 G protein-coupled receptor activity...
0032775 DNA methylation on adenine AnnotationPropagation P GO:0009007 site-specific DNA-methyltransferase (adenine-specific) ... cytosine-N4-)-methyltransferase activity IBA GO:0050911 detection of chemical stimulus involved in sensory perception of smell ... methyltransferase activity IBA GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA- ... 0071897 DNA biosynthetic process AnnotationPropagation P GO:0003887 DNA-directed DNA polymerase activity IBA GO:0007186 G ...
View source for MCL coexpression mm9:1579 - resource browser
eBook: Epigenetics & DNA Methylation - EpiGenie | Epigenetics, Stem Cell, and Synthetic Biology News
In eukaryotes, the primary modification of DNA is found in cytosines (C), where DNA Methyltransferases mediate the transfer of ... minor modifications with broad implications for the activity of the DNA. DNA methylation appears almost exclusively in the ... One of the longest-known and most studied epigenetic markers is DNA methylation, which can regulate gene expression and genomic ... a methyl group to cytosines, converting them to 5-methylcytosine (5-mC), ...
eBook: Epigenetics & DNA Methylation - EpiGenie | Epigenetics, Stem Cell, and Synthetic Biology News
In eukaryotes, the primary modification of DNA is found in cytosines (C), where DNA Methyltransferases mediate the transfer of ... minor modifications with broad implications for the activity of the DNA. DNA methylation appears almost exclusively in the ... One of the longest-known and most studied epigenetic markers is DNA methylation, which can regulate gene expression and genomic ... a methyl group to cytosines, converting them to 5-methylcytosine (5-mC), ...
Growth of the protozoan parasite Entamoeba histolytica in 5-azacytidine has limited effects on parasite gene expression | BMC...
In the protozoan parasite Entamoeba histolytica, a DNA methyltransferase has been identified and treatment with 5-azacytidine ( ... This work represents the first genome-wide analysis of DNA-methylation in Entamoeba histolytica and indicates that DNA ... a potent inhibitor of DNA methyltransferase, has been reported to attenuate parasite virulence. However, the overall extent of ... In order to identify the genome-wide effects of DNA methylation in E. histolytica, we used a short oligonucleotide microarray ...
DNA repair - Wikipedia
At least four articles report the recruitment of DNA methyltransferase 1 (DNMT1) to sites of DNA double-strand breaks.[139][140 ... to sites of some kinds of oxidative DNA damage.[137] This could cause increased methylation of cytosines (epigenetic ... Reduced expression of DNA repair genes causes deficient DNA repair. When DNA repair is deficient DNA damages remain in cells at ... Main article: DNA damage theory of aging. Pathological effects of poor DNA repair[edit]. DNA repair rate is an important ...
A multivalent signal-transducing model for the DNMT1-mediated maintenance DNA methylation
... of maintenance DNA methyltransferase DNMT1 function as readers for H4K20me3 and H3K9me3, respectively. Engagements of H4K20me3 ... Overall design from the GEO:"To examine patterns of maintenance DNA methylation deposited by DNMT1 in cells, we stably ... A multivalent signal-transducing model for the DNMT1-mediated maintenance DNA methylation UID: 10651 ... Summary from the GEO: "Heterochromatin-specific histone modifications frequently coexist with mammalian DNA methylation to ...
RBM48 and TRDMT1 Interaction - Wiki-Pi
DNA Binding. *RNA Binding. *DNA (cytosine-5-)-methyltransferase Activity. *TRNA Methyltransferase Activity ... dnmt3b dnmts fisher genotyped gg homozygous hormonal hypermethylation hypomethylation islands loci methylate methyltransferases ... dnmt3b dnmts fisher genotyped gg homozygous hormonal hypermethylation hypomethylation islands loci methylate methyltransferases ...
An analysis of DNA methylation in human adipose tissue reveals differential modification of obesity genes before and after...
Here, we investigate DNA methylation in adipose tissue from obese women before and after gastric bypass and significant weight ... It provides a strong basis for future work and offers additional evidence for the role of DNA methylation of adipose tissue in ... This is the first study reporting global DNA methylation profiling of adipose tissue before and after gastric bypass and ... DNA methyl-transferases actively methylate cytosines in CpG dinucleotides. In subcutaneous adipose we saw differential ...
Fa-Kuen Shieh - Research output - National Central University
AdoMet-dependent Methyl-transfer: Glu119 Is Essential for DNA C5-Cytosine Methyltransferase M.HhaI. Shieh, F. K. & Reich, N. O. ... Engineered Extrahelical Base Destabilization Enhances Sequence Discrimination of DNA Methyltransferase M.HhaI. Youngblood, B., ... S-adenosyl-L-methionine-dependent methyl transfer: Observable precatalytic intermediates during DNA cytosine methylation. ... DNA and Cell Biology. 30, 9, p. 671-679 9 p.. Research output: Contribution to journal › Article › peer-review ...
Publications - Salk Institute for Biological Studies
In Arabidopsis thaliana, the de novo DNA methyltransferase, domains rearranged methyltransferase 2 (DRM2), is targeted to ... DNA methylation, specifically, methylation of cytosine (C) nucleotides at the 5-carbon position (5-mC), is the most studied and ... To combat DNA damage, organisms mount a DNA damage response (DDR) that results in cell cycle regulation, DNA repair and, in ... De novo DNA methylation in Arabidopsis thaliana is catalyzed by the methyltransferase DRM2, a homolog of the mammalian de novo ...
Genes | Free Full-Text | Network Approaches for Charting the Transcriptomic and Epigenetic Landscape of the Developmental...
Lyko, F. The DNA Methyltransferase Family: A Versatile Toolkit for Epigenetic Regulation. Nat. Rev. Genet. 2018, 19, 81-92. [ ... to a cytosine [84], causing DNA folding and the consequent inaccessibility by TFs, in turn silencing gene transcription in that ... 107 DNA repair genes were detected in oocytes. Identification of the DNA repair pathways that may be active pre- and post- ... It contributes to gene expression regulation via an enzymatic reaction in which DNA methyltransferase (DNMT) catalyses the ...
DNMT1-interacting RNAs block gene-specific DNA methylation | CU Experts | CU Boulder
Methyltransferases - DNA (Cytosine-5-)-Methyltransferase 1 * DNA-Binding Proteins - CCAAT-Enhancer-Binding Proteins ... DNMT1-interacting RNAs block gene-specific DNA methylation Journal Article * Best Open Access ... Methyltransferases * DNA (Cytosine-5-)- ... Metabolism - DNA Methylation * Molecular Sequence Data - Base ... DNA * DNA (Cytosine-5-)- ... Genetic Phenomena - DNA Methylation * Genetic Structures - Base ...
Transgelin gene is frequently downregulated by promoter DNA hypermethylation in breast cancer | Clinical Epigenetics | Full Text
... is a DNA demethylating and anti-cancer agent resulting in induction of genes suppressed via DNA hypermethylation. Using ... TAGLN gene is frequently downregulated by DNA hypermethylation, and TAGLN promoter methylation profiles could serve as a future ... TAGLN expression was significantly and frequently downregulated via promoter DNA hypermethylation in breast cancer cells ... we identified for the first time TAGLN gene as a target of DNA hypermethylation in breast cancer. ...
The influence of DNA sequence on epigenome-induced pathologies | Epigenetics & Chromatin | Full Text
A number of DNA methyl-transferases (DMTs) are known to methylate DNA cytosine in the 5´ position. DMT1 efficiently propagates ... DECREASED DNA METHYLATION1 (DDM1) is a Swi2/Snf2-like DNA-dependent ATPase chromatin remodeler required for most DNA cytosine ... These data suggest that genotype predisposes this global cytosine methylation epitype.. * (9) Reprogramming of DNA cytosine ... Epialleles in heterochromatic DNA that display obligate DNA cytosine methylation always remain methylated due to the presence ...
Cloning and characterization of a DNA region encoding a stress-sensitive restriction system from Corynebacterium glutamicum...
High efficiency intergeneric conjugal transfer of plasmid DNA from Escherichia coli to methyl DNA-restricting streptomycetes.. ... DNA sequencing with chain-terminating inhibitors.. Sanger F, Nicklen S, Coulson AR., Proc. Natl. Acad. Sci. U.S.A. 74(12), 1977 ... DNA amplification and an unstable arginine gene in Streptomyces lividans 66.. Altenbuchner J, Cullum J., Mol. Gen. Genet. 195(1 ... DNA cleavage by CgII and NgoAVII requires interaction between N- and R-proteins and extensive nucleotide hydrolysis.. Zaremba M ...
Genetic impacts on DNA methylation help elucidate regulatory genomic processes | Genome Biology | Full Text
Co-localisation analyses across genetic effects on DNA methylation and 56 human traits identify 1520 co-localisations across ... through regulating the expression of ACD and SENP7 which can modulate DNA methylation at distal sites). Our findings improve ... the characterisation of the mechanisms underlying DNA methylation variability and are informative for prioritisation of GWAS ... Pinpointing genetic impacts on DNA methylation can improve our understanding of pathways that underlie gene regulation and ...
Hypermethylation of Sp1 Binding Site Suppresses Hypothalamic POMC in Neonates and May Contribute to Metabolic Disorders in...
A DNA fragment between −163 and −21 base pairs (bp) in the POMC promoter including eight cytosines of cytosine guanine (CpG) ... The status of one-carbon metabolism and the activity of DNA methyltransferases are closely related to the machinery of genome- ... B: DNA sequence of POMC promoter containing eight cytosines (boldface Cs) of CpG dinucleotides between −163 and −21 bp, Sp1 ... B: DNA sequence of POMC promoter containing eight cytosines (boldface Cs) of CpG dinucleotides between −163 and −21 bp, Sp1 ...