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*  Reconstitution of complete SV40 DNA replication with purified replication factors - CSHL Scientific Digital Repository
Animals Cattle DNA Ligases metabolism DNA Replication DNA Viral biosynthesis DNA-Binding Proteins metabolism Exonucleases ... Using these proteins, complete SV40 DNA replication was reconstituted with only purified DNA replication factors: SV40 large ... The identification and purification of human cell proteins required for the production of form I DNA following DNA replication ... Homeodomain Proteins Humans Nuclear Proteins metabolism Proto-Oncogene Proteins c-bcl-2 Replication Factor C Repressor Proteins ...
http://repository.cshl.edu/25127/
*  Biomedicines | Free Full-Text | Decoding the Pluripotency Network: The Emergence of New Transcription Factors | HTML
... there is a conserved zinc finger DNA binding domain (DBD), a hinge region and the C-terminal ligand-binding domain (LBD) that ... Other Zinc Finger Proteins. Besides the above zinc finger proteins, several other identified zinc finger proteins, including ... Esrrb also interacts directly with Nanog protein [41]. There are two Esrrb binding sites and one Nanog binding site in mouse ... Aravind, L.; Koonin, E.V. SAP-A putative DNA-binding motif involved in chromosomal organization. Trends Biochem. Sci. 2000, 25 ...
http://www.mdpi.com/2227-9059/1/1/49/htm
*  The DNA polymerase activity of Pol ε holoenzyme is required for rapid and efficient chromosomal DNA replication in Xenopus egg...
"Lysates" and "bound" indicate total protein and immunoprecipitated proteins, respectively. (C) Schematic representation of ... Tsubota T, Maki S, Kubota H, Sugino A, Maki H: Double-stranded DNA binding properties of Saccharomyces cerevisiae DNA ... exonucleases of DNA polymerase ε and δ correct base analog induced DNA replication errors on opposite DNA strands in ... DNA polymerase ε catalytic domains are dispensable for DNA replication, DNA repair, and cell viability. Mol Cell. 1999, 3: 679- ...
https://bmcbiochem.biomedcentral.com/articles/10.1186/1471-2091-7-21
*  Identification of replication factor C from Saccharomyces cerevisiae: a component of the leading-strand DNA replication complex...
... metabolism Base Sequence DNA Polymerase III metabolism DNA Replication DNA Fungal biosynthesis DNA-Binding Proteins isolation ... structure-specific DNA binding activity. By analogy with the phage T4 and SV40 DNA replication in vitro systems, the yeast RFC ... A number of proteins have been isolated from human cells on the basis of their ability to support DNA replication in vitro of ... To determine whether these proteins perform similar roles during replication of DNA from origins in cellular chromosomes, we ...
http://repository.cshl.edu/24978/
*  James A. Borowiec
... the eukaryotic single-stranded DNA-binding protein. A focus of our research is to understand the roles of RPA in enhancing ... Adenomatous polyposis coli protein regulates the cellular response to DNA replication stress. ... Genotoxic stresses that damage the chromosomal DNA or inhibit the progression of a DNA replication fork can lead to instability ... We have recently found that: 1) in interphase cells with DNA damage, RPA phosphorylation is required for efficient DNA repair ...
https://med.nyu.edu/faculty/james-a-borowiec
*  RNAi-Based Suppressor Screens Reveal Genetic Interactions Between the CRL2LRR-1 E3-Ligase and the DNA Replication Machinery in...
2016 Direct binding to replication protein A (RPA)-coated single-stranded DNA allows recruitment of the ATR activator TopBP1 to ... domains mediate protein-protein and protein-DNA interactions and are heavily represented among proteins involved in the DNA ... Eluted proteins were then loaded on a 1 ml Strep-Trap Column (GE Healthcare). After washing steps, bound proteins were eluted ... At the end of DNA replication, when an ongoing DNA replication fork from one origin encounters an incoming DNA replication fork ...
http://www.g3journal.org/content/6/10/3431
*  The DNA replication fork in eukaryotic cells - CSHL Scientific Digital Repository
At least two different DNA polymerases, a single-stranded DNA-binding protein, a clamp-loading complex, and a polymerase clamp ... protein types , enzymes , DNA polymerase. bioinformatics , genomics and proteomics , genetics & nucleic acid processing , DNA, ... Cell Cycle DNA Replication Eukaryotic Cells Nuclear Proteins metabolism Nucleic Acid Conformation. ... The process of DNA replication is also coupled to cell-cycle progression and to DNA repair to maintain genome integrity. ...
http://repository.cshl.edu/25131/
*  Retics and DNA binding proteins
... Steve Rodems smrodems at students.wisc.edu Thu Apr 21 19:06:28 EST 1994 *Previous message: Has ... Does anyone use DNA binding proteins expressed in rabbit reticulocyte lysates to do gel shift assays? This system would allow ... easy and quick expression of a suspected DNA binding protein that I could study (much easier than trying to express and purify ... the protein). I would specifically like to know if the other proteins in the system or maybe even the DNA added would somehow ...
http://www.bio.net/bionet/mm/methods/1994-April/013582.html
*  DNA binding protein purification
I need to purify some proteins which bind to DNA. I use DNA binding protein purification kit from Boerhinger with long ... DNA binding protein purification. Joel Baguet Joel.Baguet at ens-lyon.fr Mon Dec 14 11:37:15 EST 1998 *Previous message: Thank ... The protein-binding conditions are those for gel retardation assay. The results are very poor (about 1% with 35S in vitro ... concatamers of protein-binding oligonucleotide (obtainrd using self-primed PCR technique) ligated streptavidin magnetic ...
http://www.bio.net/bionet/mm/proteins/1998-December/006921.html
*  Protein-analysis] DNA binding protein purification
... Itisam Sarangi via proteins%40net.bio.net (by itisam.sarangi from gmail.com ... Dear all Presently I am trying to purifying a DNA binding protein from E.coli..and trying to remove the contaminating DNA... I ... Previous message: [Protein-analysis] PREDITOP *Next message: [Protein-analysis] Re: Protocol needed from study the protein ... Previous message: [Protein-analysis] PREDITOP *Next message: [Protein-analysis] Re: Protocol needed from study the protein ...
http://www.bio.net/bionet/mm/proteins/2008-April/012384.html
*  "Calling Cards" for DNA-Binding Proteins in Mammalian Cells |...
When PB transposase is fused to a DNA-binding protein, it causes PB to integrate into the genome near the binding sites for ... "Calling Cards" for DNA-Binding Proteins in Mammalian Cells. Haoyi Wang, David Mayhew, Xuhua Chen, Mark Johnston and Robi David ... "Calling Cards" for DNA-Binding Proteins in Mammalian Cells. Haoyi Wang, David Mayhew, Xuhua Chen, Mark Johnston and Robi David ... "Calling Cards" for DNA-Binding Proteins in Mammalian Cells. Haoyi Wang, David Mayhew, Xuhua Chen, Mark Johnston and Robi David ...
http://www.genetics.org/content/190/3/941
*  enDNA-Prot: Identification of DNA-Binding Proteins by Applying Ensemble Learning
It contains 396 proteins, classified into 146 DNA-binding proteins and 250 non DNA-binding proteins. ... It contains 2271 proteins, classified into 146 DNA-binding proteins and 2125 non DNA-binding proteins. ... It contains 182 proteins, classified into 82 DNA-binding proteins and 100 non DNA-binding proteins. ... It contains 1585 proteins, classified into 770 DNA-binding proteins and 815 non DNA-binding proteins. ...
https://www.hindawi.com/journals/bmri/2014/294279/sup/
*  DVU0682 DNA-binding protein [Desulfovibrio vulgaris str. Hildenborough] - Gene - NCBI
DNA-binding protein. Locus tag. DVU0682. Gene type. protein coding. RefSeq status. REVIEWED. Organism. Desulfovibrio vulgaris ... YP_009904.1 DNA-binding protein [Desulfovibrio vulgaris str. Hildenborough]. See identical proteins and their annotated ... HTH_XRE; Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response ... DVU0682 DNA-binding protein [ Desulfovibrio vulgaris str. Hildenborough ] Gene ID: 2795332, updated on 20-Aug-2016 ...
https://www.ncbi.nlm.nih.gov/gene/2795332
*  HMMBinder: DNA-Binding Protein Prediction Using HMM Profile Based Features
... the number of known DNA-binding proteins is very small compared to the large non-DNA-binding proteins and unknown proteins. DNA ... Among them, 525 are DNA-binding and 550 are non-DNA-binding protein sequences. All the protein sequences were taken from PDB [ ... K. K. Kumar, G. Pugalenthi, and P. N. Suganthan, "DNA-prot: identification of DNA binding proteins from protein sequence ... 17] constructed this independent dataset consisting of 93 DNA-binding and 93 non-DNA-binding protein sequences. They used ...
https://www.hindawi.com/journals/bmri/2017/4590609/
*  Browsing HMS Scholarly Articles by Subject "DNA-binding proteins"
... DSpace/Manakin Repository. * DASH Home ... Differential Disruption of EWS-FLI1 Binding by DNA-Binding Agents Chen, Changmin; Wonsey, Diane R.; Lemieux, Madeleine E.; Kung ... CCAAT/Enhancer-Binding Protein \(\gamma\) Is a Critical Regulator of IL-1\(\beta\)-Induced IL-6 Production in Alveolar ... Cyclic AMP Responsive Element Binding Proteins Are Involved in 'Emergency' Granulopoiesis through the Upregulation of CCAAT/ ...
https://dash.harvard.edu/handle/1/4454686/browse?value=DNA-binding+proteins&type=subject
*  TAR DNA-binding protein-43 homolog
... : Biological Overview , References Gene name - TAR DNA-binding protein-43 homolog Synonyms - ... The mammalian RNA/DNA-binding proteins fused in sarcoma (FUS; also known as TLS) and TAR DNA binding protein-43 (TDP-43) have ... Of the 34 modifiers identified, two RNA-binding proteins, TBPH (homolog of human TAR DNA-binding protein 43 or TDP-43) and BSF ... The presence of cytoplasmic inclusions of the RNA-binding protein TAR DNA-binding protein-43 (TDP-43) in the affected neurons ...
http://www.sdbonline.org/sites/fly/genebrief/tdp43.htm
*  RCSB PDB - Protein Feature View - DNA-binding protein - A0A037USE5 (A0A037USE5 SPIME)
The PDB archive contains information about experimentally-determined structures of proteins, nucleic acids, and complex ... Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under ... Protein disorder predictions are based on JRONN (Troshin, P. and Barton, G. J. unpublished), a Java implementation of RONN * ... The Protein Feature View requires a browser that supports SVG (Scalable Vector Graphics). Mouse over tracks and labels for more ...
http://www.rcsb.org/pdb/protein/A0A037USE5
*  Ikaros DNA-binding proteins direct formation of chromatin remodeling complexes in lymphocytes.
... Kim J., Sif S., Jones B., ... The Ikaros gene family encodes zinc finger DNA-binding proteins essential for lineage determination and control of ... Here, we report that, in the nucleus of a T cell, a major fraction of Ikaros and Aiolos proteins associate with the DNA- ... European Bioinformatics InstituteProtein Information ResourceSIB Swiss Institute of Bioinformatics. UniProt is an ELIXIR core ...
https://www.uniprot.org/citations/10204490
*  Dimerization of a specific DNA-binding protein on the DNA | Science
Many specific DNA-binding proteins bind to sites with dyad symmetry, and the bound form of the protein is a dimer. For some ... Dimerization of a specific DNA-binding protein on the DNA Message Subject. (Your Name) has forwarded a page to you from Science ... dimers form in solution and bind to DNA. LexA repressor of Escherichia coli has been used to test an alternative binding model ... A second monomer bound to an intact operator far more tightly than the first monomer; this cooperativity arose from protein- ...
http://science.sciencemag.org/content/255/5041/203
*  DNA-Binding Proteins - DNA Binding Protein Summary Report | CureHunter
The family includes proteins which bind to both double- and single-stranded DNA and also includes specific DNA binding proteins ... DNA-Binding Proteins: Proteins which bind to DNA. ... SS DNA BP; Binding Protein, DNA; DNA Binding Proteins; DNA ... DNA Binding Protein; Single-Stranded DNA-Binding Protein; Single Stranded DNA Binding Proteins; DNA Single-Stranded Binding ... DNA-Binding Proteins (DNA Binding Protein). Subscribe to New Research on DNA-Binding Proteins ...
http://www.curehunter.com/public/keywordSummaryD004268.do
*  Anti-HSV1 ICP8 Major DNA binding protein antibody [11E2] (ab20194)
Mouse monoclonal HSV1 ICP8 Major DNA binding protein antibody [11E2] validated for WB, IP, ICC/IF. Referenced in 20 ... Anti-HSV1 ICP8 Major DNA binding protein antibody [11E2]. See all HSV1 ICP8 Major DNA binding protein primary antibodies. ... During the latent phase the viral DNA is integrated into the genome of the host cell. ICP8 is the major DNA binding protein of ... Immunofluorescence analysis of HeLa cells transfected with pTF3 and pRF, staining HSV1 ICP8 Major DNA binding protein with ...
http://www.abcam.com/hsv1-icp8-major-dna-binding-protein-antibody-11e2-ab20194.html
*  RFXANK - DNA-binding protein RFXANK - Homo sapiens (Human) - RFXANK gene & protein
RFX binds the X1 box of MHC-II promoters (PubMed:9806546, PubMed:10072068, PubMed:10725724). May also potentiate the activation ... DNA-binding protein RFXANK. DNA-binding protein RFXANK (Regulatory factor X-associated ankyrin-containing protein, isoform CRA_ ... sp,O14593,RFXK_HUMAN DNA-binding protein RFXANK OS=Homo sapiens OX=9606 GN=RFXANK PE=1 SV=2 ... Protein. Similar proteins. Species. Score. Length. Source. O14593. Regulatory factor X-associated ankyrin-containing protein, ...
https://www.uniprot.org/uniprot/O14593
*  SATB1 - DNA-binding protein SATB1 - Homo sapiens (Human) - SATB1 gene & protein
DNA-binding protein SATB1Imported. ,p>Information which has been imported from another database using automatic procedures.,/p ... tr,C9J3I0,C9J3I0_HUMAN DNA-binding protein SATB1 (Fragment) OS=Homo sapiens OX=9606 GN=SATB1 PE=1 SV=8 ... to allow unambiguous identification of a protein.,p>,a href='/help/protein_names' target='_top'>More...,/a>,/p>Protein namesi. ... DNA-binding protein SATB1. DNA-binding protein SATB1 (Special AT-rich sequence-binding protein 1) ...
https://www.uniprot.org/uniprot/C9J3I0
*  EMSA for non-DNA binding protein - Protein and Proteomics
EMSA for non-DNA binding protein - (Jan/23/2008 ). im trying to perform an EMSA for a protein that is part of a transcriptional ... well, when you do an EMSA you probe with an oligo corresponding to the DNA binding sequence recognized by your TF.. I'm ... complex but does not bind DNA directly. is this possible/difficult? any experience anyone? ...
http://www.protocol-online.org/biology-forums/posts/33638.html
*  HMG1 and 2: architectural DNA-binding proteins | Biochemical Society Transactions
They bind DNA without sequence specificity, but have a high affinity for bent or distorted DNA, and bend linear DNA. The ... HMG1 and 2: architectural DNA-binding proteins. J. O. Thomas. Biochemical Society Transactions Aug 01, 2001, 29 (4) 395-401; ... HMG1 and 2 (high mobility group proteins 1 and 2; renamed HMGB1 and 2) contain two DNA-binding HMG-box domains (A and B) and a ... HMG1 and 2: architectural DNA-binding proteins Message Subject (Your Name) has forwarded a page to you from Biochemical Society ...
http://www.biochemsoctrans.org/content/29/4/395