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Basis for changes in DNA recognition by the EcoR124 and EcoR124/3. type I DNA restriction and modification enzymes. J. Mol. ... DNA Molecule Name:. 1 Genbank ID:. Gene Name:. hsdS Definition:. DNA restriction and modification endonuclease. Gene Start:. ... Replication; DNA replication, restriction, modification, recombination, and repair Pathway: pathway table. Secondary Evidence: ... Residues 6-200 are 30% similar to gb,AAD07897.1, a type I restriction enzyme S protein (hsdS) from Helicobacter pylori.. COGS ...
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DNA Molecule Name:. 1 Genbank ID:. Gene Name:. hsdS Definition:. type I restriction enzyme S protein. Gene Start:. 124286. Gene ... replication; DNA replication, restriction, modification, recombination, and repair Pathway: pathway table. Comment:. The type 1 ... Several weak hits in gapped BLAST to type I restriction enzyme ecokI related sequences, e.g. residues 1-94 are 37% similar to ... Cog name: Restriction endonuclease S subunits. Functional class: L. BeTs to -h-p---u. Number of proteins in this genome ...
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DNA Molecule Name:. 1 Genbank ID:. Gene Name:. hsdM Definition:. type I restriction enzyme M protein. Gene Start:. 124317. Gene ... replication; DNA replication, restriction, modification, recombination, and repair Pathway: pathway table. Comment:. The type 1 ... Several hits in gapped BLAST to type I restriction enzyme M proteins (hsdM). E.g. 55% similarity to the experimentally ... Residues 140-319 and 1-138 are respectively 60% and 72% similar to defined domains of O25521_XXXXX, a type I restriction enzyme ...
http://stdgen.northwestern.edu/cgi-bin/gene_id_search.cgi?dbname=uure&gene_id=UU098
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DNA Molecule Name:. 1 Genbank ID:. Gene Name:. hsdS Definition:. type I restriction enzyme S protein. Gene Start:. 123999. Gene ... replication; DNA replication, restriction, modification, recombination, and repair Pathway: pathway table. Comment:. The type 1 ... S family which is described as Type I restriction modification DNA specificity domain (PF01420). Structural Feature(s):. ... Cog name: Restriction endonuclease S subunits. Functional class: L. BeTs to -h-p---u. Number of proteins in this genome ...
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DNA Molecule Name:. 1 Genbank ID:. Gene Name:. hsdR Definition:. type I restriction enzyme R protein. Gene Start:. 123295. Gene ... Several hits in gapped BLAST to type I restriction enzyme R proteins, e.g. residues 15-1043 are 45% similar to the enzyme from ... replication; DNA replication, restriction, modification, recombination, and repair Pathway: pathway table. Comment:. Note that ... Cog name: Restriction enzymes type I helicase subunits and related helicases. Functional class: L. BeTs to -h-p-m-u. Number of ...
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Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase)(gene fpg) is a bacterial enzyme involved in DNA repair and which ... replication; DNA replication, restriction, modification, recombination, and repair Pathway: pathway table. Comment:. See ... DNA Molecule Name:. 1 Genbank ID:. Gene Name:. fpg Definition:. formamidopyrimidine-DNA glycosylase. Gene Start:. 477076. Gene ... Residues 1 to 121 (E-value = 2e-41) place UU413 in the Fapy_DNA_glyco family which is described as Formamidopyrimidine-DNA ...
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Replication; DNA replication, restriction, modification, recombination, and repair Pathway: pathway table. Primary Evidence:. ... from Neisseria gonorrhoeae P9: homologies with other enzymes recognizing the sequence 5'-GGCC-3' Nucleic Acids Res. 16 (10), ... DNA Molecule Name:. 1 Genbank ID:. Gene Name:. dcmG Definition:. site-specific DNA-methyltransferase (cytosine-specific) NgoVII ... site-specific DNA-methyltransferase)) (4e-31), NG0873 (DNA modification methylase) (1e-27) and NG1175 (cytosine specific DNA ...
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replication; DNA replication, restriction, modification, recombination, and repair Pathway: pathway table. Purine metabolism. ... Numerous hits in gapped BLAST to dnaX sequences, e.g. residues 9-449 are 34% similar to the enzyme from B. burgdorferi ( ... DNA Molecule Name:. 1 Genbank ID:. Gene Name:. dnaX Definition:. DNA polymerase III gamma-tau subunits. Gene Start:. 105760. ... The complete list of dna() genes in U.u. are: UU001, a predicted dnaA sequence; UU019, a predicted dnaH sequence; UU079, a ...
http://stdgen.northwestern.edu/cgi-bin/gene_id_search.cgi?dbname=uure&gene_id=UU087