Online Research Resources - National Human Genome Research Institute (NHGRI)Online Research Resources - National Human Genome Research Institute (NHGRI)

Gene and Protein Databases. *InterPro protein sequence analysis & classification [ebi.ac.uk]. An integrated database of ... A database of secondary structure protein assignments.. *FSSP [biocenter.helsinki.fi]. A database of fold classifications based ... NMR spectroscopy data on proteins, peptides, and nucleic acids.. *Protein Data Bank (PDB) [rcsb.org]. The repository for 3-D ... on structure-structure alignment of proteins.. *Nucleic Acid Database Project (NDB) [ndbserver.rutgers.edu]. Structural ...
more infohttps://www.genome.gov/10000375/

National Human Genome Research Institute (NHGRI) | National Institutes of Health (NIH)National Human Genome Research Institute (NHGRI) | National Institutes of Health (NIH)

... awards a grant to combine three of the worlds current protein databases into a single global resource called UniProt (www. ... 2008 - NHGRI researchers help to identify a protein that plays matchmaker between two key types of white blood cells, T and B ... The analysis, published in Nature, reduces the estimated number of human protein-coding genes from 35,000 to only 20,000-25,000 ... 2004 - NHGRI announces that the first draft version of the dog genome sequence has been deposited into free public databases. ...
more infohttps://www.nih.gov/about-nih/what-we-do/nih-almanac/national-human-genome-research-institute-nhgri

Help about protein database.Help about protein database.

Would ,, anybody be so kind to tell me about: ,, ,, (1). the protein structure databases (PIR, PDB, GenBank...) and their ,, ... Help about protein database.. Cornelius Krasel zxmkr08 at studserv.zdv.uni-tuebingen.de Wed Jun 9 05:05:00 EST 1993 *Previous ... Help about protein database. ,, ,, Hello friends: ,, ,, Im currently a computer science graduate student and going to have a ... Please send any suggestion or answer to: The only 3D database I know of is the protein data bank (PDB). All the others archive ...
more infohttp://www.bio.net/bionet/mm/bio-soft/1993-June/004870.html

Nuclear Protein Database | ProgrammableWebNuclear Protein Database | ProgrammableWeb

The Nuclear Protein Database (NPD) contains information on proteins that are localized to the nuclei of vertebrate cells. Over ... When known, the sub-nuclear compartment where the protein was found is reported. The NPD also provides information on a ... proteins amino acid sequence, predicted size, and isoelectric point, as well as any repeats, motifs, or domains within the ... 1000 vertebrate proteins, mainly from mice and humans, are included. ...
more infohttps://www.programmableweb.com/api/nuclear-protein-database/frameworks?qt-right_sidebar_apiu=0

Human Mitochondrial Protein Database | CurrikiHuman Mitochondrial Protein Database | Curriki

Features include a general database search, a graphical tool for visualizing the mitochondrial DNA sequences, and 3D structures ... and the Human Mitochondrial Genome Database. HMPDb is intended as a tool not only to aid in studying the mitochondrion but in ... conveniently consolidates information from a number of other databases, including GenBank, Online Mendelian Inheritance in Man ... for mitochondrial proteins. Users are welcome to contact the National Institute of Standards and Technology with corrections or ...
more infohttps://www.curriki.org/oer/Human-Mitochondrial-Protein-Database-211999

Search protein database by size?Search protein database by size?

... Michael Parker mparker at fhcrc.org Tue Oct 18 20:16:25 EST 1994 *Previous message: Intron ... I need to identify all proteins in swiss_prot, PIR, and genepept which are Saccharomyces and between 12Kdal and 20Kdal. Anyone ...
more infohttp://www.bio.net/bionet/mm/bio-soft/1994-October/009025.html

Protein Databases: Operations, Possibilities and ChallengesProtein Databases: Operations, Possibilities and Challenges

The information on protein function, as essentialcomponent of biological systems, is essential for the development of biology ... Keywords: protein; database; annotation; text mining; protein function; protein structure; protein domains; posttranslational ... APPRIS, as example of a secondary database based on the information provided by the core protein databases. The APPRIS database ... of the many protein databases, which status is periodically reviewed and maintained in The Molecular Biology Database ...
more infohttp://www.els.net/WileyCDA/ElsArticle/refId-a0005251.html

Funding for global protein database | EurekAlert! Science NewsFunding for global protein database | EurekAlert! Science News

15-million grant to combine three of the worlds current protein sequence databases into a single global resource. ... Throwing its financial support behind the concept of a centralized repository for protein data, the National Human Genome ... Dubbed the United Protein Database, or UniProt, the new, public database will combine the resources of three existing protein ... Funding for global protein database. NIH/National Human Genome Research Institute. Funder. National Institutes of Health. ...
more infohttps://www.eurekalert.org/pub_releases/2002-10/nhgr-ffg102302.php

Nuclear Protein Database API How Tos | ProgrammableWebNuclear Protein Database API How To's | ProgrammableWeb

The Nuclear Protein Database (NPD) contains information on proteins that are localized to the nuclei of vertebrate cells. Over ... When known, the sub-nuclear compartment where the protein was found is reported. The NPD also provides information on a ... proteins amino acid sequence, predicted size, and isoelectric point, as well as any repeats, motifs, or domains within the ... 1000 vertebrate proteins, mainly from mice and humans, are included. ...
more infohttps://www.programmableweb.com/api/nuclear-protein-database/how-to

ProtBank™ Protein DatabaseProtBank™ Protein Database

Protein Database is a comprehensive source for protein sequence and function-related information. Search your protein and get a ... ProtBank™ Protein Database. ProtBank™ is an integrated protein database that provides comprehensive, freely accessible ... Note: Proteins listed in ProtBank™ database are NOT off-the-shelf [catalog] proteins. Customized protein production request can ... ProtBank™ protein database contains relevant information on over 2 million proteins from 186 species. Search your protein of ...
more infohttps://www.genscript.com/ProtBank-protein-database.html

Bioinformatics for Human Biologist: Translation and protein-databasesBioinformatics for Human Biologist: Translation and protein-databases

Protein-databases. In this part of the exercise, we shall extract information from the protein-database, Uniprot. This database ... Under "Family and domain databases" you find a long list of databases that using different techniques have collected proteins ... and in some cases can the databases tell which parts of the actual protein that are known in other species.Some large proteins ... Exercise: Translation and protein-databases. Exercise written by: Rasmus Wernersson, Henrik Nielsen and Morten Nielsen ...
more infohttp://www.cbs.dtu.dk/courses/humanbio/2009/exercises/Extrans+uniprot/Ex_trans+uniprot_q.php

Yeast Protein DatabaseYeast Protein Database

Dear Yeastnetters, A new database for the proteins of S. cerevisiae has been released from the QUEST Protein Database Center at ... This database, called YPD (Yeast Protein Database), can be downloaded from ftp isis.cshl.org in directory pub/yeast/YPD. The ... The database will be updated periodically to include new yeast proteins that appear in the sequence databases and to add new ... Yeast_Protein_Database. Jim Garrels quest7!jg at ISIS.CSHL.ORG Wed Nov 23 22:54:43 EST 1994 *Previous message: NO SUBJECT ...
more infohttp://bio.net/bionet/mm/yeast/1994-November/001959.html

Protein Databases on the Internet - Current Protocols in Molecular Biology - Xu - Wiley Online LibraryProtein Databases on the Internet - Current Protocols in Molecular Biology - Xu - Wiley Online Library

Protein Databases on the Internet. Dong Xu and Ying Xu. Version of Record online: 1 MAY 2001 , DOI: 10.1002/0471142727. ... Protein Databases on the Internet (pages 19.4.1-19.4.15). Dong Xu and Ying Xu ... Protein Databases on the Internet. Current Protocols in Molecular Biology. 68:19.4:19.4.1-19.4.15. ... Protein Databases on the Internet (pages 19.4.1-19.4.17). Dong Xu ...
more infohttp://onlinelibrary.wiley.com/doi/10.1002/0471142727.mb1904s68/otherversions

blastx: search protein databases using a translated nucleotide queryblastx: search protein databases using a translated nucleotide query

BlastP simply compares a protein query to a protein database.. *PSI-BLAST allows the user to build a PSSM (position-specific ... Select the sequence database to run searches against. No BLAST database contains all the sequences at NCBI. BLAST databases are ... Search using Blastx (search protein databases using a translated nucleotide query) Show results in a new window. ... Search using Blastx (search protein databases using a translated nucleotide query) Show results in a new window. ...
more infohttps://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastx&PAGE_TYPE=BlastSearch&BLAST_SPEC=OGP__10090__9559&LINK_LOC=blasttab

blastx: search protein databases using a translated nucleotide queryblastx: search protein databases using a translated nucleotide query

BlastP simply compares a protein query to a protein database.. *PSI-BLAST allows the user to build a PSSM (position-specific ... Select the sequence database to run searches against. No BLAST database contains all the sequences at NCBI. BLAST databases are ... Search using Blastx (search protein databases using a translated nucleotide query) Show results in a new window. ... Search using Blastx (search protein databases using a translated nucleotide query) Show results in a new window. ...
more infohttps://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastx&PAGE_TYPE=BlastSearch&BLAST_SPEC=&LINK_LOC=blasttab

HAMAP database of protein familiesHAMAP database of protein families

... an orthologous protein, a record from another database, etc.,/p> ,p>,a href="/manual/evidences">More…,/a>,/p> Skip Header ... i ,p>When browsing through different UniProt proteins, you can use the basket to save them, so that you can back to find or ... European Bioinformatics InstituteProtein Information ResourceSIB Swiss Institute of Bioinformatics. ...
more infohttp://www.uniprot.org/database/DB-0041

Protein database - WikipediaProtein database - Wikipedia

Protein database may refer to: Any protein structure database Any protein sequence database Exact names "Protein" database of ... the National Institute of Health Protein Database of Bio-Synthesis, Inc.. ...
more infohttps://en.wikipedia.org/wiki/Protein_database

download from protein database by olgabot · Pull Request #7 · bionode/bionode-ncbi · GitHubdownload from protein database by olgabot · Pull Request #7 · bionode/bionode-ncbi · GitHub

Id like to download all protein sequence files for the gene POLR2L, which Im doing with: bionode-ncbi download protein ... www.ncbi.nlm.nih.gov/protein/XP_009457936.1?report=fasta&log$=seqview&format=text (this isnt a pure fasta file, it still has ... as protein] (/usr/local/lib/node_modules/bionode-ncbi/lib/bionode-ncbi.js:431:26) at DestroyableTransform.transform [as _ ... database,URL functions. Can you clarify? Thanks! Olga ... I tried putting in the URL I got from searching for a protein ...
more infohttps://github.com/bionode/bionode-ncbi/pull/7

Protein BLAST: search protein databases using a protein queryProtein BLAST: search protein databases using a protein query

BlastP simply compares a protein query to a protein database.. *PSI-BLAST allows the user to build a PSSM (position-specific ... Select the sequence database to run searches against. No BLAST database contains all the sequences at NCBI. BLAST databases are ... Search using Blastp (protein-protein BLAST) Show results in a new window. ... Search using Blastp (protein-protein BLAST) Show results in a new window. ...
more infohttp://fermi.utmb.edu/cgi-bin/SDAP/sdap_10?dB_Type=0&allid=167&seqid=337&serverid=0

Protein BLAST: search protein databases using a protein queryProtein BLAST: search protein databases using a protein query

BlastP simply compares a protein query to a protein database.. *PSI-BLAST allows the user to build a PSSM (position-specific ... Select the sequence database to run searches against. No BLAST database contains all the sequences at NCBI. BLAST databases are ... Search using Blastp (protein-protein BLAST) Show results in a new window. ... Search using Blastp (protein-protein BLAST) Show results in a new window. ...
more infohttp://fermi.utmb.edu/cgi-bin/SDAP/sdap_10?dB_Type=0&allid=82&seqid=784&serverid=0

Ciona intestinalis protein database - WikipediaCiona intestinalis protein database - Wikipedia

The Ciona intestinalis protein database (CIPRO) is a protein database for the tunicate species C. intestinalis. Ciona ... Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and ... 39 (Database issue): D807-14. doi:10.1093/nar/gkq1144. PMC 3013717 . PMID 21071393. http://cipro.ibio.jp/2.5. ...
more infohttps://en.wikipedia.org/wiki/Ciona_intestinalis_protein_database

Drug ADME Associated Protein DatabaseDrug ADME Associated Protein Database

A database for facilitating the search for drug Absorption, Distribution, Metabolism, Excretion associated proteins. It ... Absorption, distribution, metabolism, and excretion-associated protein database . L. Z. Sun, Z. L. Ji, X. Chen, J. F. Wang, and ... contains information about known drug ADME associated proteins, functions, similarities, substrates / ligands, tissue ...
more infohttp://bidd.nus.edu.sg/group/admeap/admeap.asp

CiteSeerX - Pfam protein families databaseCiteSeerX - Pfam protein families database

Pfam is now based not only on the UniProtKB sequence database, but also on NCBI GenPept and on sequences from selected metage- ... The current release of Pfam (22.0) contains 9318 protein families. ... Pfam is a comprehensive collection of protein domains and families, represented as multiple sequence alignments and as profile ... title = {Pfam protein families database},. booktitle = {Nucleic Acids Research, 2008, 36(Database issue): D281-D288},. year ...
more infohttp://citeseer.ist.psu.edu/viewdoc/summary?doi=10.1.1.1008.9771&rank=6

Protein-Protein Interaction Databases | SpringerLinkProtein-Protein Interaction Databases | SpringerLink

... literature and increasingly reliable computational predictions have resulted in creation of vast databases of protein ... Protein-protein interactions Functional associations Protein-protein interaction databases Pathways Protein-protein interaction ... Szklarczyk D., Jensen L.J. (2015) Protein-Protein Interaction Databases. In: Meyerkord C., Fu H. (eds) Protein-Protein ... Here we present an overview of the most widely used protein-protein interaction databases and the methods they employ to gather ...
more infohttps://link.springer.com/protocol/10.1007%2F978-1-4939-2425-7_3

Lobbying Spending Database-Plasma Protein Therapeutics Assn, 2009 | OpenSecretsLobbying Spending Database-Plasma Protein Therapeutics Assn, 2009 | OpenSecrets

Explore the billions of dollars special interest groups are spending on lobbying in Washington, D.C., -- and on what -- at OpenSecrets.org.
more infohttp://www.opensecrets.org/lobby/clientbills.php?id=D000055497&year=2009