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*  Inference of Transcriptional Networks in Arabidopsis through Conserved Noncoding Sequence Analysis | Plant Cell
conserved noncoding sequence. TFBS. transcription factor binding site. CMM. Comparative Motif Mapping. FDR. false discovery ... Inference of Transcriptional Networks in Arabidopsis through Conserved Noncoding Sequence Analysis. Jan Van de Velde, Ken S. ... Inference of Transcriptional Networks in Arabidopsis through Conserved Noncoding Sequence Analysis. Jan Van de Velde, Ken S. ... Inference of Transcriptional Networks in Arabidopsis through Conserved Noncoding Sequence Analysis. Jan Van de Velde, Ken S. ...
http://www.plantcell.org/content/26/7/2729.short
*  Conserved sequence - Wikipedia
Identifying conserved sequences can be used to discover and predict functional sequences such as genes. Conserved sequences ... Sequences may also recombine or be deleted due to chromosomal rearrangements. Conserved sequences are sequences which persist ... Highly conserved DNA sequences are thought to have functional value, although the role for many highly conserved non-coding DNA ... In evolutionary biology, conserved sequences are similar or identical sequences in nucleic acids (DNA and RNA) or proteins ...
https://en.wikipedia.org/wiki/Conserved_sequence
*  FuturePundit: DNA Ultra-Conserved Sequences Found Between Humans, Mice Rats
DNA Ultra-Conserved Sequences Found Between Humans, Mice Rats Comparisons between the DNA sequences of humans, mice, rats, and ... The first indication of the existence of ultra-conserved sequence regions was found in the initial comparison of the human and ... Researchers have found precisely the same sequences in the genomes of humans, rats, and mice; sequences that are 95 to 99 ... Comparison between the genomes of humans, mice, and rats showed many identical sequences. Most of those sequences do not code ...
http://www.futurepundit.com/archives/002095.html
*  RNase T shares conserved sequence motifs with DNA proofreading exonucleases.
... E V Koonin and M P Deutscher ... Sequence analysis of the Escherichia coli dnaE gene. J Bacteriol. 1987 Dec;169(12):5735-5744. [PMC free article] [PubMed] ... Sequence and transcriptional analysis of the Escherichia coli rnt gene encoding RNase T. J Biol Chem. 1992 Dec 15;267(35):25609 ...
http://pubmedcentralcanada.ca/pmcc/articles/PMC309564/?lang=en-ca
*  Numerous potentially functional but non-genic conserved sequences on human chromosome 21 - Infoscience
The aim of such comparative analysis is to identify conserved, functionally transcribed sequences such as protein-coding genes ... Although previous studies have made similar observations, it is unknown whether these conserved sequences are genes or not. ... extensive experimental and computational analysis of human chromosome 21 in an effort to assign function to sequences conserved ... Our data support the presence of a large number of potentially functional non-genic sequences, probably regulatory and ...
https://infoscience.epfl.ch/record/114885
*  Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs - Semantic Scholar
The predicted peptides are characterized by a conserved C-terminal sequence motif and additional primary structure conservation ... Sequence analysis of the Arabidopsis thaliana genome has revealed numerous transmembrane receptors predicted to bind ... A subset of the predicted peptides show high overall sequence similarity to Rapid Alkalinization Factor (RALF), a peptide ... Annotation of the Arabidopsis genome sequence has made it possible to identify peptide-encoding genes. However, such ...
https://www.semanticscholar.org/paper/Peptomics%2C-identification-of-novel-cationic-with-Olsen-Mundy/82d3836759c8df56410d12f0766e79ec65403d32
*  WebLogo displaying conserved sequences associated with | Open-i
WebLogo displaying conserved sequences associated with frameshift sites.Sizes of letters denote information content, or ... To search the potential conserved sequence elements, 30 bp upstream and downstream of the conserved slippery sequence motif ... To search the potential conserved sequence elements, 30 bp upstream and downstream of the conserved slippery sequence motif ... Consistent with a previous report, no conserved sequence element was found except the slippery site sequence 5′-WWW TAR-3′ (W=A ...
https://openi.nlm.nih.gov/detailedresult.php?img=PMC4759687_srep21139-f4&req=4
*  "Structure-function studies of conserved sequence motifs of cytochrome " by Louis J. Crowley
Within these domains are highly conserved 'motifs' necessary for the proper binding and orientation of both the NADH coenzyme ... To address the importance of these conserved motifs site-directed mutagenesis was utilized to generate a series of variants ... The role of the '124GRxxST127' was determined by the introduction of a positive charge, charge reversal, and conserved amino ... mutants that are found within or in close proximity to these highly conserved motifs were analyzed utilizing site-directed ...
http://scholarcommons.usf.edu/etd/682/
*  Mutagenesis of charged residues in a conserved sequence in the 2-kinase domain of 6-phosphofructo-2-kinase/fructose-2,6...
Mutagenesis of charged residues in a conserved sequence in the 2-kinase domain of 6-phosphofructo-2-kinase/fructose-2,6- ... Mutagenesis of charged residues in a conserved sequence in the 2-kinase domain of 6-phosphofructo-2-kinase/fructose-2,6- ... Mutagenesis of charged residues in a conserved sequence in the 2-kinase domain of 6-phosphofructo-2-kinase/fructose-2,6- ... Mutagenesis of charged residues in a conserved sequence in the 2-kinase domain of 6-phosphofructo-2-kinase/fructose-2,6- ...
http://www.biochemj.org/content/323/3/863.3
*  Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence. | IKMB
Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence. Institut für Klinische ... Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence. ... A multiple sequence alignment of homologous proteins demonstrates that some of the missense variants are located in highly ... Sequence variations in the gene products PYPAF1/CIAS1 and NOD2/CARD15 have been associated with several autoinflammatory ...
http://www.ikmb.uni-kiel.de/publications/disease-associated-variants-pypaf1-and-nod2-result-similar-alterations-conserved
*  Specific and conserved sequences in D. melanogaster and C. elegans lamins and histone H2A mediate the attachment of lamins to...
Specific and conserved sequences in D. melanogaster and C. elegans lamins and histone H2A mediate the attachment of lamins to ... The evolutionarily conserved NLS motif and T/SRAT/S sequence probably play a role in the binding of other lamins to chromatin ... Specific and conserved sequences in D. melanogaster and C. elegans lamins and histone H2A mediate the attachment of lamins to ... Specific and conserved sequences in D. melanogaster and C. elegans lamins and histone H2A mediate the attachment of lamins to ...
http://jcs.biologists.org/content/120/1/77
*  Conserved sequences of BART and BHRF regions encoding viral microRNAs in Epstein-Barr virus-associated lymphoma | BMC Research...
This suggests that the DNA sequences of EBV-encoded miR-BARTs and miR-BHRF1-1 are conserved in EBV-associated lymphoma. ... All the PCR products were sequenced directly. DNA fragments encoding miR-BARTs and miR-BHRF1-1 were successfully amplified from ... In conclusion, the sequences of the EBV genome that encode miR-BARTs and miR-BHRF1 are conserved in EBV-associated lymphoma. ... Conserved sequences of BART and BHRF regions encoding viral microRNAs in Epstein-Barr virus-associated lymphoma. ...
https://bmcresnotes.biomedcentral.com/articles/10.1186/s13104-017-2603-z
*  Inference of transcriptional networks in Arabidopsis through conserved noncoding sequence analysis
... Jan Van de Velde (UGent) , ... "Inference of Transcriptional Networks in Arabidopsis Through Conserved Noncoding Sequence Analysis." Plant Cell 26 (7): 2729- ... "Inference of Transcriptional Networks in Arabidopsis Through Conserved Noncoding Sequence Analysis." PLANT CELL 26.7 (2014): ... We have developed a phylogenetic footprinting approach for the identification of conserved noncoding sequences (CNSs) across 12 ...
https://biblio.ugent.be/publication/5738431
*  Conserved Non-Genic Sequences by Brig Klyce
Untranslated regulatory sequences need to be conserved, for example. But regulatory sequences have more error tolerance than ... Conserved Non-Genic Sequences What'sNEW. There are about 60,000 CNGs in the human genome, about twice the number of coding ... "conserved non-genic sequences" (CNGs) of unknown function that are better conserved than genes, and twice as abundant. It was ... Len A. Pennacchio et al., "In vivo enhancer analysis of human conserved non-coding sequences" [text], 10.1038/nature05295, p ...
https://panspermia.org/nongenseq.htm
*  Random amplification of polymorphic DNA with conserved sequences reveals genome-specific monomorphic amplicons: implications in...
Genome Analysis; Conserved Sequences; Rapd; Monomorphic Amplicons; Molecular Systematics; Clad Identification. ID Code:. 20748 ... The RAPD amplicons generated by evolutionarily conserved primer(s) or sequences shared by many species may be useful for clad ... Random amplification of polymorphic DNA with conserved sequences reveals genome-specific monomorphic amplicons: implications in ... Random amplification of polymorphic DNA with conserved sequences reveals genome-specific monomorphic amplicons: implications in ...
http://repository.ias.ac.in/20748/
*  RCSB PDB - 141D: SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS...
Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance ... SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE ...
http://www.rcsb.org/pdb/explore/materialsAndMethods.do?structureId=141D
*  Evaluation of novel Streptococcus pyogenes vaccine candidates incorporating multiple conserved sequences from the C-repeat...
Evaluation of novel Streptococcus pyogenes vaccine candidates incorporating multiple conserved sequences from the C-repeat ... Here we have identified and characterised the distribution of common variant sequences from individual repeat units of the C- ... Our findings demonstrate that linkage of multiple variant sequences into a single recombinant construct overcomes the need to ... Antibodies raised against SV1, containing five variant sequences, also kill heterologous S. pyogenes isolates in in vitro ...
https://research-repository.griffith.edu.au/handle/10072/45803
*  Evolution of the casein multigene family: conserved sequences in the 5' flanking and exon regions. - Semantic Scholar
Several highly conserved regions in the first 200 base pairs of the 5' flanking DNA have been identified. Additional sequence ... These conserved 5' flanking sequences may contain potential cis regulatory elements which are responsible for the coordinate ... and bovine alpha s1-casein sequences. Unexpectedly, the 5' flanking promoter regions are conserved to a greater extent than ... sequences determined. The rat alpha-, beta-, gamma- and bovine alpha s1-casein genes contain similar 5' exon arrangements in ...
https://www.semanticscholar.org/paper/Evolution-of-the-casein-multigene-family%3A-conserved-Yu-lee-Richter-Mann/ad51fe2fc528fc546382c8d2f86d3bc8d3404370
*  Evolutionary Discrimination of Mammalian Conserved Non-Genic Sequences (CNGs) | Science
Evolutionary Discrimination of Mammalian Conserved Non-Genic Sequences (CNGs) Message Subject. (Your Name) has forwarded a page ... Evolutionary Discrimination of Mammalian Conserved Non-Genic Sequences (CNGs). By Emmanouil T. Dermitzakis, Alexandre Reymond, ... Evolutionary Discrimination of Mammalian Conserved Non-Genic Sequences (CNGs). By Emmanouil T. Dermitzakis, Alexandre Reymond, ... Analysis of the human and mouse genomes identified an abundance of conserved non-genic sequences (CNGs). The significance and ...
http://science.sciencemag.org/content/302/5647/1033
*  Conserved non-coding sequence - Wikipedia
A conserved non-coding sequence (CNS) is a DNA sequence of noncoding DNA that is evolutionarily conserved. These sequences are ... Conserved non-coding sequences can be important sites of evolutionary divergence as mutations in these regions may alter the ... Jan 2005). "Plant conserved non-coding sequences and paralogue evolution". Trends in Genetics. 21 (1): 60-65. doi:10.1016/j.tig ... Intron sequences may be conserved, often because they contain expression regulating elements that put functional constraints on ...
https://en.wikipedia.org/wiki/Conserved_non-coding_sequence
*  A short peptide sequence is conserved between three tick-borne Borrelia | Biochemical Society Transactions
A short peptide sequence is conserved between three tick-borne Borrelia. LYN HAYES, LEONARD C. ARCHARD, DAVID J. M. WRIGHT ... A short peptide sequence is conserved between three tick-borne Borrelia Message Subject (Your Name) has forwarded a page to you ...
http://www.biochemsoctrans.org/content/15/4/644.1
*  Refining multiple sequence alignments with conserved core regions
... Saikat Chakrabarti, Christopher J. Lanczycki, Anna R. ... A block model represents conserved sequence/structure regions which are highly unlikely to contain gaps and are common to all ... Realignment of each sequence can correct misalignments between a given sequence and the rest of the profile and at the same ... Realignment of each sequence can correct misalignments between a given sequence and the rest of the profile by shifting the ...
http://pubmedcentralcanada.ca/pmcc/articles/PMC1463900/?lang=en-ca
*  cis-Decoder discovers constellations of conserved DNA sequences shared among tissue-specific enhancers | Genome Biology | Full...
Analysis of 2,086 conserved sequence blocks (CSBs), identified from 135 characterized enhancers, reveals most CSBs consist of ... a tool for discovery of conserved sequence elements that are shared between similarly regulated enhancers. ... Our findings suggest that enhancers employ overlapping repertoires of highly conserved core elements. ... A systematic approach is described for analysis of evolutionarily conserved cis-regulatory DNA using cis-Decoder, ...
https://genomebiology.biomedcentral.com/articles/10.1186/gb-2007-8-5-r75
*  Conserved primer sequences for PCR amplification of fungal rDNA | Vilgalys Mycology Lab - Duke University
Conserved primer sequences for PCR amplification of fungal rDNA. Note: the original web site describing our primer sequences ... Over the years, our lab has compiled a useful list of conserved primer sequences useful for amplification and sequencing of ... Sequence (5′-,3′). Position within S. cereviseae rRNA. comments. 5.8S. CGCTGCGTTCTTCATCG. 51-35 (5.8S RNA). contains EcoRI site ... Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pp. 315-322 In: PCR Protocols: A Guide to ...
https://sites.duke.edu/vilgalyslab/rdna_primers_for_fungi/
*  "A highly conserved sequence essential for translational repression of " by J Zhong, A H. Peters et al.
Mutation of the conserved sequence causes premature translation of a transgene containing a fusion between the human growth ... In this study, we demonstrate that a highly conserved sequence, the translational control element, is solely responsible for ... hormone coding sequence and the protamine 1 3' untranslated region. Temporal expression of the transgene was monitored in ... Translational regulation of the protamine 1 mRNA is mediated by sequences in its 3' untranslated region. ...
https://mouseion.jax.org/stfb2000_2009/862/