Inference of Transcriptional Networks in Arabidopsis through Conserved Noncoding Sequence Analysis | Plant CellInference of Transcriptional Networks in Arabidopsis through Conserved Noncoding Sequence Analysis | Plant Cell

conserved noncoding sequence. TFBS. transcription factor binding site. CMM. Comparative Motif Mapping. FDR. false discovery ... Inference of Transcriptional Networks in Arabidopsis through Conserved Noncoding Sequence Analysis. Jan Van de Velde, Ken S. ... Inference of Transcriptional Networks in Arabidopsis through Conserved Noncoding Sequence Analysis. Jan Van de Velde, Ken S. ... Inference of Transcriptional Networks in Arabidopsis through Conserved Noncoding Sequence Analysis. Jan Van de Velde, Ken S. ...
more infohttp://www.plantcell.org/content/26/7/2729.short

Experts and Doctors on conserved sequence in Kagoshima, JapanExperts and Doctors on conserved sequence in Kagoshima, Japan

Genomes and Genes about Experts and Doctors on conserved sequence in Kagoshima, Japan ... Experts and Doctors on conserved sequence in Kagoshima, Japan. Summary. Locale: Kagoshima, Japan ... You are here: Locale , Japan , Experts and Doctors on conserved sequence in Kagoshima, Japan ... These results and phylogenetic analysis suggested that the medaka neu3a is an evolutionally conserved sialidase with regard to ...
more infohttp://www.labome.org/locale/japan/experts-and-doctors-on-conserved-sequence-in-kagoshima--japan-1596361.html

The bromodomain: a conserved sequence found in human, Drosophila and yeast proteins.  - PubMed - NCBIThe bromodomain: a conserved sequence found in human, Drosophila and yeast proteins. - PubMed - NCBI

The bromodomain: a conserved sequence found in human, Drosophila and yeast proteins.. Haynes SR1, Dollard C, Winston F, Beck S ...
more infohttps://www.ncbi.nlm.nih.gov/pubmed/1350857?dopt=Abstract

FuturePundit: DNA Ultra-Conserved Sequences Found Between Humans, Mice RatsFuturePundit: DNA Ultra-Conserved Sequences Found Between Humans, Mice Rats

DNA Ultra-Conserved Sequences Found Between Humans, Mice Rats Comparisons between the DNA sequences of humans, mice, rats, and ... The first indication of the existence of ultra-conserved sequence regions was found in the initial comparison of the human and ... Researchers have found precisely the same sequences in the genomes of humans, rats, and mice; sequences that are 95 to 99 ... Comparison between the genomes of humans, mice, and rats showed many identical sequences. Most of those sequences do not code ...
more infohttp://www.futurepundit.com/archives/002095.html

RNase T shares conserved sequence motifs with DNA proofreading exonucleases.RNase T shares conserved sequence motifs with DNA proofreading exonucleases.

... E V Koonin and M P Deutscher ... Sequence analysis of the Escherichia coli dnaE gene. J Bacteriol. 1987 Dec;169(12):5735-5744. [PMC free article] [PubMed] ... Sequence and transcriptional analysis of the Escherichia coli rnt gene encoding RNase T. J Biol Chem. 1992 Dec 15;267(35):25609 ...
more infohttp://pubmedcentralcanada.ca/pmcc/articles/PMC309564/?lang=en-ca

Conserved sequence - WikipediaConserved sequence - Wikipedia

Identifying conserved sequences can be used to discover and predict functional sequences such as genes. Conserved sequences ... Sequences may also recombine or be deleted due to chromosomal rearrangements. Conserved sequences are sequences which persist ... Highly conserved DNA sequences are thought to have functional value, although the role for many highly conserved non-coding DNA ... In evolutionary biology, conserved sequences are similar or identical sequences in nucleic acids (DNA and RNA) or proteins ...
more infohttps://en.wikipedia.org/wiki/Conserved_sequence

Functional importance of a conserved sequence motif in FhaC, a prototypic member of the TpsB/Omp85 superfamily.  - PubMed - NCBIFunctional importance of a conserved sequence motif in FhaC, a prototypic member of the TpsB/Omp85 superfamily. - PubMed - NCBI

Functional importance of a conserved sequence motif in FhaC, a prototypic member of the TpsB/Omp85 superfamily.. Delattre AS1, ... This motif is conserved in a predicted loop between two β-barrel strands in more distant relatives of FhaC involved in protein ... The VRGY tetrad is highly conserved in the TpsB family and, in FhaC, it is located at the tip of L6 reaching the periplasm. ... Replacement of the conserved Tyr affects the channel properties, but not the secretion activity, suggesting that this residue ...
more infohttps://www.ncbi.nlm.nih.gov/pubmed/20955520

Numerous potentially functional but non-genic conserved sequences on human chromosome 21 - InfoscienceNumerous potentially functional but non-genic conserved sequences on human chromosome 21 - Infoscience

The aim of such comparative analysis is to identify conserved, functionally transcribed sequences such as protein-coding genes ... Although previous studies have made similar observations, it is unknown whether these conserved sequences are genes or not. ... extensive experimental and computational analysis of human chromosome 21 in an effort to assign function to sequences conserved ... Our data support the presence of a large number of potentially functional non-genic sequences, probably regulatory and ...
more infohttps://infoscience.epfl.ch/record/114885

Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs - Semantic ScholarPeptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs - Semantic Scholar

The predicted peptides are characterized by a conserved C-terminal sequence motif and additional primary structure conservation ... Sequence analysis of the Arabidopsis thaliana genome has revealed numerous transmembrane receptors predicted to bind ... A subset of the predicted peptides show high overall sequence similarity to Rapid Alkalinization Factor (RALF), a peptide ... Annotation of the Arabidopsis genome sequence has made it possible to identify peptide-encoding genes. However, such ...
more infohttps://www.semanticscholar.org/paper/Peptomics%2C-identification-of-novel-cationic-with-Olsen-Mundy/82d3836759c8df56410d12f0766e79ec65403d32

WebLogo displaying conserved sequences associated with  | Open-iWebLogo displaying conserved sequences associated with | Open-i

WebLogo displaying conserved sequences associated with frameshift sites.Sizes of letters denote information content, or ... To search the potential conserved sequence elements, 30 bp upstream and downstream of the conserved slippery sequence motif ... To search the potential conserved sequence elements, 30 bp upstream and downstream of the conserved slippery sequence motif ... Consistent with a previous report, no conserved sequence element was found except the slippery site sequence 5′-WWW TAR-3′ (W=A ...
more infohttps://openi.nlm.nih.gov/detailedresult.php?img=PMC4759687_srep21139-f4&req=4

Structure-function studies of conserved sequence motifs of cytochrome  by Louis J. Crowley"Structure-function studies of conserved sequence motifs of cytochrome " by Louis J. Crowley

Within these domains are highly conserved motifs necessary for the proper binding and orientation of both the NADH coenzyme ... To address the importance of these conserved motifs site-directed mutagenesis was utilized to generate a series of variants ... The role of the 124GRxxST127 was determined by the introduction of a positive charge, charge reversal, and conserved amino ... mutants that are found within or in close proximity to these highly conserved motifs were analyzed utilizing site-directed ...
more infohttp://scholarcommons.usf.edu/etd/682/

Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence. | IKMBDisease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence. | IKMB

Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence. Institut für Klinische ... Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence. ... A multiple sequence alignment of homologous proteins demonstrates that some of the missense variants are located in highly ... Sequence variations in the gene products PYPAF1/CIAS1 and NOD2/CARD15 have been associated with several autoinflammatory ...
more infohttp://www.ikmb.uni-kiel.de/publications/disease-associated-variants-pypaf1-and-nod2-result-similar-alterations-conserved

Specific and conserved sequences in D. melanogaster and C. elegans lamins and histone H2A mediate the attachment of lamins to...Specific and conserved sequences in D. melanogaster and C. elegans lamins and histone H2A mediate the attachment of lamins to...

Specific and conserved sequences in D. melanogaster and C. elegans lamins and histone H2A mediate the attachment of lamins to ... The evolutionarily conserved NLS motif and T/SRAT/S sequence probably play a role in the binding of other lamins to chromatin ... Specific and conserved sequences in D. melanogaster and C. elegans lamins and histone H2A mediate the attachment of lamins to ... Specific and conserved sequences in D. melanogaster and C. elegans lamins and histone H2A mediate the attachment of lamins to ...
more infohttp://jcs.biologists.org/content/120/1/77

Conserved sequences of BART and BHRF regions encoding viral microRNAs in Epstein-Barr virus-associated lymphoma | BMC Research...Conserved sequences of BART and BHRF regions encoding viral microRNAs in Epstein-Barr virus-associated lymphoma | BMC Research...

This suggests that the DNA sequences of EBV-encoded miR-BARTs and miR-BHRF1-1 are conserved in EBV-associated lymphoma. ... All the PCR products were sequenced directly. DNA fragments encoding miR-BARTs and miR-BHRF1-1 were successfully amplified from ... In conclusion, the sequences of the EBV genome that encode miR-BARTs and miR-BHRF1 are conserved in EBV-associated lymphoma. ... Conserved sequences of BART and BHRF regions encoding viral microRNAs in Epstein-Barr virus-associated lymphoma. ...
more infohttps://bmcresnotes.biomedcentral.com/articles/10.1186/s13104-017-2603-z

Chemotactic Adaptation Is Altered by Changes in the Carboxy-Terminal Sequence Conserved among the Major Methyl-Accepting...Chemotactic Adaptation Is Altered by Changes in the Carboxy-Terminal Sequence Conserved among the Major Methyl-Accepting...

The box with the solid black border indicates the C-terminal sequence conserved among Tar, Tsr, and Tcp, and the box with the ... We here investigated the effects of mutations altering the C-terminal NWET/SF sequence which is conserved among the major ... Chemotactic Adaptation Is Altered by Changes in the Carboxy-Terminal Sequence Conserved among the Major Methyl-Accepting ... Chemotactic Adaptation Is Altered by Changes in the Carboxy-Terminal Sequence Conserved among the Major Methyl-Accepting ...
more infohttps://jb.asm.org/content/180/7/1862

Inference of transcriptional networks in Arabidopsis through conserved noncoding sequence analysisInference of transcriptional networks in Arabidopsis through conserved noncoding sequence analysis

... Jan Van de Velde (UGent) , ... "Inference of Transcriptional Networks in Arabidopsis Through Conserved Noncoding Sequence Analysis." Plant Cell 26 (7): 2729- ... "Inference of Transcriptional Networks in Arabidopsis Through Conserved Noncoding Sequence Analysis." PLANT CELL 26.7 (2014): ... We have developed a phylogenetic footprinting approach for the identification of conserved noncoding sequences (CNSs) across 12 ...
more infohttps://biblio.ugent.be/publication/5738431

Conserved Non-Genic Sequences by Brig KlyceConserved Non-Genic Sequences by Brig Klyce

Untranslated regulatory sequences need to be conserved, for example. But regulatory sequences have more error tolerance than ... Conserved Non-Genic Sequences WhatsNEW. There are about 60,000 CNGs in the human genome, about twice the number of coding ... "conserved non-genic sequences" (CNGs) of unknown function that are better conserved than genes, and twice as abundant. It was ... Len A. Pennacchio et al., "In vivo enhancer analysis of human conserved non-coding sequences" [text], 10.1038/nature05295, p ...
more infohttps://panspermia.org/nongenseq.htm

Linear array of conserved sequence motifs to discriminate protein subfamilies: study on pyridine nucleotide-disulfide...Linear array of conserved sequence motifs to discriminate protein subfamilies: study on pyridine nucleotide-disulfide...

A workflow to improve the clusterization of protein families based on the array of linear conserved motifs is designed. The ... 5.- The groups were then globally analyzed by comparison of all the conserved blocks using LAMA tool [18]. Sequences with most ... Second, the sequences lacking the C-x-x-C motif from this dataset were discarded, recovering 120 sequences. Third, the ... Excluding those blocks, the most conserved region found was around the C-x-x-C motif. The MSA of such conserved region is shown ...
more infohttps://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-8-96

A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants | Plant PhysiologyA Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants | Plant Physiology

2003) Conserved noncoding sequences among cultivated cereal genomes identify candidate regulatory sequence elements and ... A recent attempt to identify very deeply conserved CNSs reported that sequences conserved throughout the Eudicot clade of ... A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants. Jan Van de Velde, Michiel Van Bel, ... conserved noncoding sequence. TFBS. transcription factor binding site. TF. transcription factor. ChIP-Seq. chromatin ...
more infohttp://www.plantphysiol.org/node/744.full.print

Random amplification of polymorphic DNA with conserved sequences reveals genome-specific monomorphic amplicons: implications in...Random amplification of polymorphic DNA with conserved sequences reveals genome-specific monomorphic amplicons: implications in...

Genome Analysis; Conserved Sequences; Rapd; Monomorphic Amplicons; Molecular Systematics; Clad Identification. ID Code:. 20748 ... The RAPD amplicons generated by evolutionarily conserved primer(s) or sequences shared by many species may be useful for clad ... Random amplification of polymorphic DNA with conserved sequences reveals genome-specific monomorphic amplicons: implications in ... Random amplification of polymorphic DNA with conserved sequences reveals genome-specific monomorphic amplicons: implications in ...
more infohttp://repository.ias.ac.in/20748/

A conserved amino acid sequence directing intracellular type III secretion by Salmonella typhimurium | PNASA conserved amino acid sequence directing intracellular type III secretion by Salmonella typhimurium | PNAS

This sequence predicts that sifB encodes a 10-aa protein. To determine the sequence of sifB, DNA sequences containing sifB were ... A conserved amino acid sequence directing intracellular type III secretion by Salmonella typhimurium. Edward A. Miao and Samuel ... SspH1 and SlrP both contain a conserved sequence, MFNIXNXQ, at the amino terminus, whereas the remainder of the family contains ... PCR and DNA sequence analyses were performed as described (16). sseI was sequenced from pEM55 (which was cloned from a size- ...
more infohttps://www.pnas.org/content/97/13/7539?ijkey=bf31572186d4cc8ae13bf8f0bcb1fd9a9e593729&keytype2=tf_ipsecsha

RCSB PDB 









- 141D: SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS...RCSB PDB - 141D: SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS...

Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance ... SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE ...
more infohttp://www.rcsb.org/pdb/explore/materialsAndMethods.do?structureId=141D

Evaluation of novel Streptococcus pyogenes vaccine candidates incorporating multiple conserved sequences from the C-repeat...Evaluation of novel Streptococcus pyogenes vaccine candidates incorporating multiple conserved sequences from the C-repeat...

Evaluation of novel Streptococcus pyogenes vaccine candidates incorporating multiple conserved sequences from the C-repeat ... Here we have identified and characterised the distribution of common variant sequences from individual repeat units of the C- ... Our findings demonstrate that linkage of multiple variant sequences into a single recombinant construct overcomes the need to ... Antibodies raised against SV1, containing five variant sequences, also kill heterologous S. pyogenes isolates in in vitro ...
more infohttps://research-repository.griffith.edu.au/handle/10072/45803

Evolution of the casein multigene family: conserved sequences in the 5 flanking and exon regions. - Semantic ScholarEvolution of the casein multigene family: conserved sequences in the 5' flanking and exon regions. - Semantic Scholar

Several highly conserved regions in the first 200 base pairs of the 5 flanking DNA have been identified. Additional sequence ... These conserved 5 flanking sequences may contain potential cis regulatory elements which are responsible for the coordinate ... and bovine alpha s1-casein sequences. Unexpectedly, the 5 flanking promoter regions are conserved to a greater extent than ... sequences determined. The rat alpha-, beta-, gamma- and bovine alpha s1-casein genes contain similar 5 exon arrangements in ...
more infohttps://www.semanticscholar.org/paper/Evolution-of-the-casein-multigene-family%3A-conserved-Yu-lee-Richter-Mann/ad51fe2fc528fc546382c8d2f86d3bc8d3404370

Evolutionary Discrimination of Mammalian Conserved Non-Genic Sequences (CNGs) | ScienceEvolutionary Discrimination of Mammalian Conserved Non-Genic Sequences (CNGs) | Science

Evolutionary Discrimination of Mammalian Conserved Non-Genic Sequences (CNGs) Message Subject. (Your Name) has forwarded a page ... Evolutionary Discrimination of Mammalian Conserved Non-Genic Sequences (CNGs). By Emmanouil T. Dermitzakis, Alexandre Reymond, ... Evolutionary Discrimination of Mammalian Conserved Non-Genic Sequences (CNGs). By Emmanouil T. Dermitzakis, Alexandre Reymond, ... Analysis of the human and mouse genomes identified an abundance of conserved non-genic sequences (CNGs). The significance and ...
more infohttp://science.sciencemag.org/content/302/5647/1033