Nucras - bibliography
The consensus structures allowed a detailed analysis of rRNA sequence evolution. Phylogenetic trees were inferred from Bayesian ... Mayer, W. & Pavlicev, M. (2007) - The phylogeny of the family Lacertidae (Reptilia) based on nuclear DNA sequences: Convergent ... Engleder, A. & Haring, E. & Kirchhof, S. & Mayer, W. (2013) - Multiple nuclear and mitochondrial DNA sequences provide new ... We sequenced sections of the widely used mitochondrial genes coding for 16S rRNA, 12S rRNA and cytochrome b (altogether 2045 bp ...
zic1 Summary
texhax] Numbering Author-Year Bibliography
Sequence Logos: A New Way to Display Consensus Sequences}, journal = Nucleic Acids Res., volume = 18, pages = 6097--6100, ... The reference output is like this: References Schneider T.D.and Stephens R.M. Sequence Logos: A New Way to Display Consensus ... A New Way to Display Consensus Sequences. Nucleic Acids Res., 18:6097-6100, 1990. [2] Yu W. and Schuster W. Evidence for a site ... The desired output is something like this: References [1] Schneider T.D.and Stephens R.M. Sequence Logos: ...
RCSB PDB - 4TU8: STRUCTURE OF U2AF65 VARIANT WITH BRU5A6 DNA
The essential splicing factor U2AF(65) normally recognizes a Py tract consensus sequence preceding the major class of 3 splice ... The essential splicing factor U2AF(65) normally recognizes a Py tract consensus sequence preceding the major class of 3 splice ... Sequence Clusters. 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity. ...
Moore Notes 1 16 13 - OpenWetWare
Currently use consensus sequence (regardless of family size). *Another distance might be better *PRC is a good profile-vs- ... More sensitive than BLAST for full-length sequences. *But metagenomics data (i.e., short sequences) is better classified using ... All-vs-all LAST for MCL of new sequences next *Stephen: LAST designed for "best hit" searches ...
Bayesian approach to determining penetrance of pathogenic SDH variants | Journal of Medical Genetics
Consensus Statement on next-generation-sequencing-based diagnostic testing of hereditary phaeochromocytomas and paragangliomas ... Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College ... ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing. Genet Med 2013;15:565-74.doi ... UK patients were analysed for SDHB/SDHC/SDHD/VHL mutations by Sanger sequencing (until 2012) and then mostly by a next ...
The quasispecies concept | Virology Blog
The consensus sequence for this population is shown as a line at the bottom. There are no mutations in the consensus sequence, ... This means that sequences of the new influenza H1N1 viruses on NCBI or GISAID sequences represent a consensus, and do not ... A key point is that the genome sequences of viruses cluster around an average sequence, but every genome is probably different ... Until recently it was not possible to know the sequences of all the viral genomes present in a population such as that ...
PRIME PubMed | FK506-binding protein 52 phosphorylation: a potential mechanism for regulating steroid hormone receptor activity
Within the FK linker of FKBP52 is the sequence TEEED, which forms a consensus casein kinase II phosphorylation site; the ... Within the FK linker of FKBP52 is the sequence TEEED, which forms a consensus casein kinase II phosphorylation site; the ... SteroidSequence AlignmentSequence Homology, Amino AcidStructural Homology, ProteinTacrolimus Binding Proteins ... Amino Acid SequenceAnimalsCatalytic DomainCircular DichroismHSP90 Heat-Shock ProteinsHumansMiceModels, MolecularMolecular ...
Sclerotinia Wilt of Hop (Humulus lupulus) Caused by Sclerotinia sclerotiorum in the Pacific Northwest United States
The amplicons were sequenced bidirectionally and consensus sequences were 100% similar to S. sclerotiorum (GenBank No. ... AAGT01000678.1). Two nucleotide polymorphisms were present that differentiated the sequences from those of 12 S. trifoliorum ... and pathogen identity was confirmed by PCR amplification and sequencing of the internal transcribed spacer regions from ...
Development and Role of the Human Reference Sequence in Personal Genomics | ScienceBlogs
A key point of the reference genome is that it is not a single sequence. Instead it is an assembly of consensus sequences that ... A key point of the reference genome is that it is not a single sequence. Instead it is an assembly of consensus sequences that ... The current reference genome sequence is a collection of sequences, an assembly, that include sequences assembled into ... DNA sequences evolve through duplication and mutation and, as a result, contain many repeated sequences of different sizes, ...
Viruses as Quasispecies: Biological Implications | SpringerLink
González-López C, Gómez-Mariano G, Escarmís C, Domingo E (2005) Invariant aphthovirus consensus nucleotide sequence in the ... large fitness variations with an invariant arenavirus consensus genomic nucleotide sequence. J Virol 79:10451-10459 ... Perales C, Martin V, Ruiz-Jarabo CM, Domingo E (2005) Monitoring sequence space as a test for the target of selection in ... Eigen M, Biebricher CK (1988) Sequence space and quasispecies distribution. In Domingo E, Ahlquist P Holland JJ (eds) RNA ...
the birdflu index virus - FluTrackers News and Information
Sequence analysis.The 1918 and AI gene sequences were compared to. consensus wild-bird- derived influenza virus sequences ... 1,410-nt)sequences,. 514 M1/2 (1,002-nt) sequences, and 550 NS1/2 (831-nt) sequences. These sequence alignments are available ... 1,116 PB1 (2,271-nt) sequences,. 1,119 PA (2,148-nt) sequences, 212 HA (1,218-nt) sequences, 1,119 NP (1,494-nt)sequences,. 865 ... sus sequences. The 1918 PB1 protein differs. from the conserved avian influenza consensus. sequence by only seven amino acid ...
Insects Visiting Drippy Blight Diseased Red Oak Trees Are Contaminated with the Pathogenic Bacterium Lonsdalea quercina | Plant...
... and sequenced at Genewiz (South Plainfield, NJ). Chromatograms were visualized; sequences were joined to make a consensus and ... Genome sequences of strain ATCC 29281 and pin and northern red oak isolates of Lonsdalea quercina subsp. quercina. Genome ... Sequences with high quality base calls for all nucleotides were deposited in NCBI Nucleotide Database under the accession ... 2012). To confirm pathogen presence, L. quercina primers and quality nucleotide sequences were first compared against the ...
AMAS: a fast tool for alignment manipulation and computing of summary statistics [PeerJ]
AMAS works on amino acid and nucleotide alignments and combines capabilities of sequence manipulation with a function that ... entail separate analyses of each of the loci in addition to multiple analyses of subsets of genes or concatenated sequences. ... write MrBayes blocks in NEXUS files or create consensus sequences. Phyutility also allows for interactions with the NCBI ... focus specifically on aligned sequences may be appealing: Access to raw alignment components such as sequences and taxa is easy ...
Index Catalog // Emory Theses and Dissertations
דעות תקצירים | TensorFlow Datasets
Martin Krzywinski - EMBO 2011 Cover Contest - Hive Plot - Visualizing Ratios - Canada's Michael Smith Genome Sciences Centre
Curved links encode sequence similarity and outer data tracks represent consensus similarity statistics and orthologous genes. ... The image showss 672 bases of sequencing barcodes generated by three different single-cell RNA sequencing platforms were ... Akbari, V. et al. Parent-of-origin detection and chromosome-scale haplotyping using long-read DNA methylation sequencing and ... Kijima, Y. et al. A universal sequencing read interpreter (2023) Science Advances 9. ...
Sandwalk: The Function Wars: Part I
There seems to be a consensus that conserved sequence is the gold standard for function. In such cases deleting the sequence ... Do these random sequences therefore have the function of binding transcription factors? Yes, those random sequences that bind ... Do random sequences bind transcription factors or not? Yes, some random sequences (but not all) bind transcription factors.. ... Some inactive TE sequences happen to be in a beneficial spot or have a beneficial sequence for the host and then they are ...
Index Catalog // Emory Theses and Dissertations
Molecular Vision: Ultra high throughput sequencing excludes MDH1 as candidate gene for RP28-linked retinitis pigmentosa
After mapping, Maq generated a consensus sequence and calculated the Phred quality score at each position of this sequence. ... More specifically, sequencing runs produced 5.2 million and 4.8 million raw sequences when the LR-PCRs from patients V-4/PMK146 ... Furthermore, filtered sequences could be easily mapped back to the reference sequence of the human genome, with an overall ... To circumvent problems linked to sequence length and composition and to test the potential of parallel sequencing in routine ...
The promoter regions of intellectual disability-associated genes are uniquely enriched in LTR sequences of the MER41 primate...
MER41B LTR comprises a STAT1 consensus sequence while MER41A LTR does not. Interestingly, an YY1 consensus sequence is present ... The UniProt database of protein sequence and functional information (The UniProt Consortium, 2018): performing protein sequence ... binds consensus sequences that, in humans, are located with a high frequency in the LTRs (Long Terminal Repeats) of the MER41 ... an important share of the IFNγ/STAT1 pro-inflammatory pathway is mediated by the binding of STAT1 to consensus sequences ...
WikiGenes - Vitis
A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. Velasco, R., Zharkikh, A., Troggio, ... Sequence and mutational analysis of a tartrate utilization operon from Agrobacterium vitis. Crouzet, P., Otten, L. J. Bacteriol ... The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon, O., Aury, J.M., Noel, B ... Sequence and mutational analysis of a tartrate utilization operon from Agrobacterium vitis [1]. ...
The Corona Conspiracy, Part 19: Thomas Cowan and 'The Myth of Contagion', Frank Visser
We generated consensus sequences by Sanger sequencing from both directions by using Sequencher version 5.4.6, and further ... In bottom-up sequencing projects, a contig refers to overlapping sequence data (reads); in top-down sequencing projects, contig ... subsequently for Oxford Nanopore MinION sequencing. We generated consensus nanopore sequences by using Minimap version 2.17 and ... The consensus that seems to bother Cowan refers to the technology of finding the sequence that occurs most frequently in a ...
JCI Insight - Heteroplasmic and homoplasmic m.616T|C in mitochondria tRNAPhe promote isolated chronic kidney disease and...
These sequencing results were compared with the updated consensus Cambridge sequence (NC_ 012920) (28). To analysis the ... Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet. 1999;23(2):147. View this ... Automating the identification of DNA variations using quality-based fluorescence re-sequencing: analysis of the human ... by high-throughput sequencing (Supplemental Figure 2), whose routine blood tests for renal function was normal but who self- ...
Japanese species of Ormosia Rondani (Diptera, Limoniidae): revision of the subgenera Oreophila Lackschewitz and Parormosia...
The first DNA barcode sequences of the species Ormosia (Parormosia) diversipes Alexander and Ormosia (Parormosia) phalara Kato ... Consensus barcode sequences were submitted to BoldSystems (http://www.boldsystems.org).. Abbreviations. ea ejaculatory apodeme ... DNA barcode sequences of the species Ormosia (Parormosia) diversipes Alexander and Ormosia (Parormosia) phalara Kato & Kolcsár ... The first DNA barcode sequences of the species Ormosia (Parormosia) diversipes Alexander and Ormosia (Parormosia) phalara Kato ...
OPUS Würzburg | Search
They provide consensus-based summaries of the sequences in the alignment. Consequently, individual sequences cannot be ... Sequence Logos and its variants are the most commonly used method for visualization of multiple sequence alignments (MSAs) and ... We recently proposed Sequence Bundles, a motif visualization technique that maintains a one-to-one relationship between ... ALVIS: interactive non-aggregative visualization and explorative analysis of multiple sequence alignments (2016) ...
The Structure, Function and Importance of Carbohydrates | NEB
N-linked Glycan - Glycan covalently linked to an asparagine residue of a polypeptide chain in the consensus sequence: -Asn-X- ... O-linked Glycans - A glycan glycosidically linked to the hydroxyl group of the amino acids serine or threonine in the consensus ...
ETV2 Proteins
Binds to DNA sequences containing the consensus pentanucleotide 5-CGGA[AT]-3 (By similarity). ...