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*  Protein consensus sequence motifs | SpringerLink
The large number of protein consensus sequences that may be recognized without computer analysis are reviewed. These include ... and consensus sequences that may be carried out on the internet.. Index Entries. Protein consensus sequences motifs protein- ... The large number of protein consensus sequences that may be recognized without computer analysis are reviewed. These include ... Aitken, A. (1995) Protein chemistry methods, posttranslational modification, consensus sequences, in Proteins Labfax (Price, N ...
https://link.springer.com/article/10.1385%2FMB%3A12%3A3%3A241
*  Consensus sequence - Biology-Online Dictionary
Consensus sequence Of a series of related dna, rna or protein sequences, the sequence that reflects the most common choice of ... The generation of consensus sequences has been subjected to intensive mathematical analysis. ... Retrieved from "https://www.biology-online.org/dictionary/index.php?title=Consensus_sequence&oldid=10105" ...
https://www.biology-online.org/dictionary/Consensus_sequence
*  Consensus sequence - Wikipedia
... can also be considered as consensus sequences. Thus a consensus sequence is a model for a putative DNA binding site: it is ... The conserved sequence motifs are called consensus sequences and they show which residues are conserved and which residues are ... Any mutation allowing a mutated nucleotide in the core promoter sequence to look more like the consensus sequence is known as ... A protein binding site, represented by a consensus sequence, may be a short sequence of nucleotides which is found several ...
https://en.wikipedia.org/wiki/Consensus_sequence
*  Kozak consensus sequence - Wikipedia
The Kozak consensus sequence, Kozak consensus or Kozak sequence is a sequence which occurs on eukaryotic mRNA and has the ... The Kozak consensus sequence plays a major role in the initiation of the translation process. The sequence was named after the ... consensus, the nucleotides at positions +4 (i.e. G in the consensus) and -3 (i.e. either A or G in the consensus) relative to ... Lmx1b is an example of a gene with a weak Kozak consensus sequence. For initiation of translation from such a site, other ...
https://en.wikipedia.org/wiki/Kozak_consensus_sequence
*  Consensus sequence | Article about consensus sequence by The Free Dictionary
An average nucleotide sequence; each nucleotide is the most frequent at its position in the sequence Explanation of consensus ... Looking for consensus sequence? Find out information about consensus sequence. ... consensus sequence. Also found in: Dictionary, Thesaurus, Medical, Legal, Wikipedia. consensus sequence. [kən′sen·səs ‚sē·kwəns ... Then comparisons were made between the consensus sequence and the entries in the MicroSeq database.. DNA sequencing by Microseq ...
http://encyclopedia2.thefreedictionary.com/consensus+sequence
*  FOXM1 binds directly to non-consensus sequences in the human genome | Genome Biology | Full Text
... assay identified point mutations in the DNA binding domain of FOXM1 that inhibit binding to a FKH consensus sequence. Cell ... FOXM1 is specifically recruited to chromatin through co-factor interactions by binding directly to non-canonical DNA sequences. ... As expected the FOXM1B DBD associates with a positive control FKH consensus sequence in a dose dependent manner (K d of 224 ± ... The first (1) shows FOXM1 binding to FKH consensus sequences in concert with recruitment of the MuvB complex present at cell ...
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0696-z
*  How to get the consensus sequence from a BAM alignment
Ngs Question ~ Consensus Could anybody point towards the direction in how to generate a "consensus" fasta sequence file in... ... Extract consensus dna sequence of multiple genes from multiple bam files in fasta format Hi, I have multiple bam files (aligned ... In the most general case the SNPs may not resolve into a single consensus sequence because that is not how the SNP callers work ... What the original poster needs is creating a consensus sequence out of BAM alignments. It is easy to misread that into the ...
https://www.biostars.org/p/186536/
*  A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target | Science...
A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target ... A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target ... A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target ... A highly conserved G-rich consensus sequence in hepatitis C virus core gene represents a new anti-hepatitis C target ...
http://advances.sciencemag.org/content/2/4/e1501535
*  Whole-genome consensus sequence analysis of a South African rotavirus SA11 sample reveals a mixed infection with two close...
"Whole-genome consensus sequence analysis of a South African rotavirus SA11 sample reveals a mixed infection with two close ... Determination of the whole-genome consensus sequence of the prototype DS-1 rotavirus using sequence-independent genome ... Whole-genome consensus sequence analysis of a South African rotavirus SA11 sample reveals a mixed... Mlera, Luwanika; O'Neill, ... Whole-genome consensus sequence analysis of a South African rotavirus SA11 sample reveals a mixed infection with two close ...
https://www.deepdyve.com/lp/springer_journal/whole-genome-consensus-sequence-analysis-of-a-south-african-rotavirus-l2Ykhqwm3c
*  Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in...
In S. cerevisiae, Autonomously Replicating Sequences (ARSs) contain a consensus sequence (ACS) that binds the Origin ... To identify essential origin sequences genome-wide, we utilized a tiled oligonucleotide array (NimbleGen) to map the ORC and ... These binding sites define a set of potential Autonomously Replicating Sequences (ARSs), which we term nimARSs. The nimARS set ... exact features of chromatin that impinge on replication origin function is to define the precise locations of the DNA sequences ...
https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-7-276
*  Microsatellite detection and consensus sequence verification by virtual PCR and machine learning
... ... Microsatellites, or simple sequence repeats, are genetic loci where several nucleotide bases are repeated in tandem. Since they ... or a shotgun-sequencing database without the overhead required to perform PCR chemically with human intervention. Moreover, a ... a program that detects and then verifies microsatellites by modeling PCR digitally from an Expressed Sequence Tag (EST) ...
https://athenaeum.libs.uga.edu/handle/10724/21091
*  GenomeCons 1.0 - Manipulate Multiple Genome Sequence Alignments and their Consensus Sequences
... web server to manipulate multiple genome sequence alignments and their consensus sequences for high-throughput genome sequence ... Posted by admin at 4:46 pm Tagged with: Consensus Sequence, Genome, GenomeCons, Sequence Alignments 50 views. Sorry, the ... GenomeCons: a web server for manipulating multiple genome sequence alignments and their consensus sequences.. Sato T, Suyama M. ... GenomeCons 1.0 - Manipulate Multiple Genome Sequence Alignments and their Consensus Sequences. Alignment / BLAST ...
http://www.mybiosoftware.com/genomecons-1-0-manipulate-multiple-genome-sequence-alignments-and-their-consensus-sequences.html
*  Secondary structure prediction and consensus sequence o | Open-i
Secondary structure prediction and consensus sequence of PelD and PleD. A. Secondary structure predication was made using the ... B. Consensus sequence of PelD and PleD was based on Phyre alignment of 20 and 100 homologues respectively. Residues required ... B. Consensus sequence of PelD and PleD was based on Phyre alignment of 20 and 100 homologues respectively. Residues required ... fig05: Secondary structure prediction and consensus sequence of PelD and PleD. A. Secondary structure predication was made ...
https://openi.nlm.nih.gov/detailedresult.php?img=PMC2170427_mmi0065-1474-f5&req=4
*  The Consensus Coding Sequences of Human Breast and Colorectal Cancers | Science
The Consensus Coding Sequences of Human Breast and Colorectal Cancers. By Tobias Sjöblom, Siân Jones, Laura D. Wood, D. ... The Consensus Coding Sequences of Human Breast and Colorectal Cancers. By Tobias Sjöblom, Siân Jones, Laura D. Wood, D. ... The Consensus Coding Sequences of Human Breast and Colorectal Cancers Message Subject. (Your Name) has forwarded a page to you ... These sequences were used to design primers for PCR amplification and sequencing of exons and adjacent splice sites. Primers ...
https://science.sciencemag.org/content/314/5797/268?ijkey=a0191b98c5d58528dbaf7acceaf2f2e1c9db6da2&keytype2=tf_ipsecsha
*  Gentaur Molecular :GenWay \ Interferon Consensus Sequence Binding Protein 1 (IRF8 ICSBP1) Rabbit anti-Human Polyclonal (C...
Interferon Consensus Sequence Binding Protein 1 (IRF8_ICSBP1) Rabbit anti-Human Polyclonal (C-Terminus) Antibody \ GWB-60223C ... Interferon Consensus Sequence Binding Protein 1 (IRF8_ICSBP1) Rabbit anti-Human Polyclonal (C-Terminus) Antibody Human samples ... Interferon Consensus Sequence Binding Protein 1 (IRF8_ICSBP1) Rabbit anti-Human Polyclonal (C-Terminus) Antibody antibody ... Interferon Consensus Sequence Binding Protein 1 (IRF8_ICSBP1) Rabbit anti-Human Polyclonal (C-Terminus) Antibody storing ...
http://www.antibody-antibodies.com/product4275524-search-Interferon_Consensus_Sequence_Binding_Protein_1_
*  The Need for a Consensus Next-generation Sequencing Panel fo... : HemaSphere
Home , Current Issue , The Need for a Consensus Next-generation Sequencing Panel fo... ... The Need for a Consensus Next-generation Sequencing Panel for Mature Lymphoid Malignancies. Sujobert, Pierre1,2; Le Bris, ... The Need for a Consensus Next-generation Sequencing Panel for Mature Lymphoid Malignancies ... For example, sequencing errors can be due to cytosine deamination during formol fixation and paraffin embedding.14,15 It is ...
https://journals.lww.com/hemasphere/Fulltext/2019/02000/The_Need_for_a_Consensus_Next_generation.4.aspx
*  Unique NS5b Hepatitis C Virus Gene Sequence Consensus Database...
Unique NS5b Hepatitis C Virus Gene Sequence Consensus Database Is Essential for Standardization of Genotype Determinations in ... Unique NS5b Hepatitis C Virus Gene Sequence Consensus Database Is Essential for Standardization of Genotype Determinations in ... a reliable HCV genotype for clinical and epidemiological purposes as long as they are provided a consensus reference sequence ... genotype determination involving 12 laboratories demonstrates that any laboratory with expertise in sequencing techniques would ...
https://www.mysciencework.com/publication/show/unique-ns5b-hepatitis-c-virus-gene-sequence-consensus-database-is-essential-for-standardization-of-genotype-determinations-in-multicenter-epidemiological-studies
*  Consensus Fasta Sequence Of A Given Genomic Region For Individuals From 1000G
Consensus from mpileup error Dear all, I am trying to generate the consensus sequence for whole genome sequencing. The refer... ... Get the consensus sequence ... (I know, should be easy) Hello, I have been trying to generate a consensus sequence with ... Generating consensus sequences Hi all, I am interested in generating consensus sequences from a bwa alignment. I generated the ... How to do consensus calling from bam files Hi, I want to extract consensus sequences for a number of bam files with the intent ...
https://www.biostars.org/p/85188/
*  Vol 15: The utility of PacBio circular consensus sequencing for characterizing complex gene families in non-model organisms. -...
Vol 15: The utility of PacBio circular consensus sequencing for characterizing complex gene families in non-model organisms ... Descargar gratis o leer online en formato PDF el libro: Vol 15: The utility of PacBio circular consensus sequencing for ... Here we investigate the utility of Pacific Biosciences single molecule real-time SMRT circular consensus sequencing CCS as an ... Results: We generated 34,088 high quality circular consensus sequences of two diverse V1R subfamilies here referred to as V1RI ...
http://libros.duhnnae.com/2017/jun3/149691418984-Vol-15-The-utility-of-PacBio-circular-consensus-sequencing-for-characterizing-complex-gene-families-in-non-model-organisms-Larsen-Peter-A-Heilma.php
*  OrgConv: detection of gene conversion using consensus sequences and its application in plant mitochondrial and chloroplast...
The program compares every examined sequence against the consensus sequence of each sequence alignment rather than exhaustively ... Making use of consensus sequences significantly reduces the number of comparisons and therefore reduces overall computational ... The input files of the feature program are two multiple sequence alignments from different organellar compartments in FASTA ... it may also be used for detection of gene conversion between any two distinct groups of homologous sequences. ...
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-11-114
*  Simple sequence repeat-based consensus linkage map of Bombyx mori. - Semantic Scholar
... a second generation consensus silkworm genetic map with a range of 7-40 markers per linkage group and a total map length of ... cDNA sequences, and cloned random amplified polymorphic DNAs. By integrating a visible mutation p (plain, larval marking) and ... of silkworm aided by visible mutations and cleaved amplified polymorphic sequence markers developed from previously mapped ... We established a genetic linkage map employing 518 simple sequence repeat (SSR, or microsatellite) markers for Bombyx mori ( ...
https://www.semanticscholar.org/paper/Simple-sequence-repeat-based-consensus-linkage-map-Miao-Xub/46ce26f6d7706539ae4f85e94d1d09236fc6708e
*  Sequences similar to the consensus Ste12p binding sit | Open-i
Sequences similar to the consensus Ste12p binding site in the upstream regions of the FIG1, FIG2, KAR5/FIG3, and FIG4 genes. ... Underlined sequences represent exact matches to the PRE consensus sequence. Mentions: An upstream regulatory element termed the ... Figure 2: Sequences similar to the consensus Ste12p binding site in the upstream regions of the FIG1, FIG2, KAR5/FIG3, and FIG4 ... Figure 2: Sequences similar to the consensus Ste12p binding site in the upstream regions of the FIG1, FIG2, KAR5/FIG3, and FIG4 ...
https://openi.nlm.nih.gov/detailedresult.php?img=PMC2140177_JCB29347.f2&req=4
*  Gene transcriptions/Boxes/Ts - Wikiversity
Consensus sequences[edit]. "The different inducing activities of Xbra, VegT and Eomesodermin suggest that the proteins might ... Consensus sequences · Control groups · Cytogenetics · Cytosines · Deoxyribonucleic acids · Digestion · Disaccharides · ... Consensus sequences/Quiz · Control groups/Quiz · Cytogenetics/Quiz · Cytosine/Quiz · Deoxyribonucleic acid/Quiz · Digestion/ ... XR_950840.3 RNA Sequence, transcript variant X4, misc RNA.. Gene ID: 6913 is TBX15 T-box 15. "This gene belongs to the T-box ...
https://en.wikiversity.org/wiki/Gene_transcriptions/Boxes/Ts
*  Discovery and analysis of the first endogenous lentivirus | PNAS
Construction and Analysis of a Consensus Sequence.. We systematically screened publicly available, genome scale sequence ... we assembled a consensus sequence based on all rabbit genome matches with ,2 kb of lentivirus sequence identity (34 in total). ... The resulting consensus sequence [supporting information (SI) Fig. 5] contained long ORFs encoding Gag, Pol, and Env ... 2000) HIV Sequence Compendium, eds Kuiken C , Foley B , Freed E , Hahn B , Korber B , Marx PA , McCutchan F , Mellors JW , ...
http://www.pnas.org/content/104/15/6261
*  SCORE: A computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data ...
Whole-Genome Inventory of Consensus Sequence Matches.. Perl scripts (available on request) were written to search the ... Drosophila genome for matches to binding site consensus sequences. Release 2 (October, 2000) chromosome arm sequences and gene ... The positions of consensus sequence matches relative to known or predicted genes are calculated by the script, and the identity ... and the Notch pathway was to search the complete Drosophila genome sequence (13) for matches to a consensus definition ( ...
https://www.pnas.org/content/99/15/9888?ijkey=49850802fd5eb72d3d7f6c27c5776a492f361ecc&keytype2=tf_ipsecsha