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*  A single sequence context cannot satisfy all non-AUG initiator codons in yeast† | BMC Microbiology | Full Text
We next tested whether the non-AUG initiator codons identified above can also act as initiator codons in GRS1. To this end, the ... it was interesting to point out that the non-AUG initiator codons of ALA1 and GRS1 and the cryptic initiator codon of ALA1 ... a less-efficient non-AUG initiator codon in the context of ALA1, was one of the strongest non-AUG initiator codons in the ... Codon PositionInitiator CodonFusion ConstructSequence ContextAlternative Translation Initiation. Background. Aminoacyl-tRNA ...
https://0-bmcmicrobiol-biomedcentral-com.brum.beds.ac.uk/articles/10.1186/1471-2180-10-188
*  NADP Transhydrogenase - Transhydrogenase Summary Report | CureHunter
10/01/2011 - "The insertion of the transposon, which occurred 16 bp upstream from the start codon of an ORF encoding a soluble ...
http://www.curehunter.com/public/keywordSummaryD009250-NADP-Transhydrogenase-Transhydrogenase.do
*  Weblogo representation of the region surrounding the kn | Open-i
However, in certain cases, initiation can occur at codons differing from AUG by a single nucleotide, especially the codons CUG ... However, in certain cases, initiation can occur at codons differing from AUG by a single nucleotide, especially the codons CUG ... Mentions: Of the 9 possible codons that differ from AUG in a single position, 5 are used to initiate the extensions of the 17 ... Mentions: Of the 9 possible codons that differ from AUG in a single position, 5 are used to initiate the extensions of the 17 ...
https://openi.nlm.nih.gov/detailedresult.php?img=PMC3105428_gkr007f6&req=4
*  Comparative chloroplast genomes of Paris Sect. Marmorata: insights into repeat regions and evolutionary implications |...
Codon usage pattern. Most protein-coding genes employed the standard initiator codon AUG; however, six unusual start codons ... the codon usage patterns were determined for 71 distinct protein-coding genes in Sect. Marmorata chloroplast genomes. Codons of ... Wright F. The 'effective number of codons' used in a gene. Gene. 1990;87(1):23-9.PubMedGoogle Scholar ... Codon usage and substitution rate calculation. RSCU, GC3s, and ENc for 71 protein-coding genes were calculated using CodonW ...
https://link.springer.com/article/10.1186%2Fs12864-018-5281-x
*  DHCR7 Gene - GeneCards | DHCR7 Protein | DHCR7 Antibody
initiator_codon_variant, missense_variant. rs104886035. pathogenic, not provided, Smith-Lemli-Opitz syndrome, Smith-Lemli-Opitz ...
http://www.genecards.org/cgi-bin/carddisp.pl?gene=DHCR7&origene_3utr_trans=2
*  RPS26 Gene - GeneCards | RS26 Protein | RS26 Antibody
initiator_codon_variant, missense_variant. rs148622862. pathogenic, Diamond-Blackfan anemia 10. 56,042,170(+). G/A. splice_ ...
https://www.genecards.org/cgi-bin/carddisp.pl?gene=RPS26
*  HTN3 Gene - GeneCards | HIS3 Protein | HIS3 Antibody
initiator_codon_variant, missense_variant. rs1000103488. --. 70,030,487(+). C/T. intron_variant. rs10007523. --. 70,029,260(+) ...
https://www.genecards.org/cgi-bin/carddisp.pl?gene=HTN3
*  JAM3 Gene - GeneCards | JAM3 Protein | JAM3 Antibody
initiator_codon_variant, missense_variant. rs397515438. pathogenic, Hemorrhagic destruction of the brain, subependymal ...
https://www.genecards.org/cgi-bin/carddisp.pl?gene=JAM3
*  CCL13 Gene - GeneCards | CCL13 Protein | CCL13 Antibody
initiator_codon_variant, missense_variant. Structural Variations from Database of Genomic Variants (DGV) for CCL13 Gene. ...
https://www.genecards.org/cgi-bin/carddisp.pl?gene=CCL13
*  DNAJA4 Gene - GeneCards | DNJA4 Protein | DNJA4 Antibody
frameshift, initiator_codon_variant, intron_variant. rs1000192761. --. 78,267,104(+). G/C. intron_variant. ...
https://www.genecards.org/cgi-bin/carddisp.pl?gene=DNAJA4
*  SERPINB8 Gene - GeneCards | SPB8 Protein | SPB8 Antibody
initiator_codon_variant, intron_variant, missense_variant. rs762923677. pathogenic, Peeling skin syndrome 5. 63,987,099(+). AA/ ...
http://www.genecards.org/cgi-bin/carddisp.pl?id_type=entrezgene&id=5271
*  Magnitude and breadth of CTL responses to frameshift-de | Open-i
Codon, Initiator/genetics/immunology. *Female. *Frameshift Mutation/immunology. *HLA-A3 Antigen. *Humans ...
https://openi.nlm.nih.gov/detailedresult.php?img=PMC2812535_JEM_20091808_RGB_Fig1&req=4
*  Patente WO1999052357A1 - Assays for inhibitors of bacterial translation initiation factor 3 - Google Patentes
The figure is a schematic diagram of the pAUU-CAT reporter gene construct in which the CAT gene has its ATG initiator codon ... and is based on the ability of IF3 to discriminate against translation initiation at the atypical start codon of the reporter ... 15 the first codon of the reporter gene is an atypical start codon. To make a test strain, the native ATG start codon of a ... The figure is a schematic diagram of the pAUU-CAT reporter gene construct in which the CAT gene has its ATG initiator codon ...
http://www.google.es/patents/WO1999052357A1?cl=en
*  Plus it
Kozak M. At least six nucleotides preceding the AUG initiator codon enhance translation in mammalian cells. J. Mol. Biol., 196: ... The sequences (CCAGAGAUGG) around the predicted initiator methionine codon of the XPA gene agree with the Kozak's consensus ... Kozak M. Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes ... C for codon 228; and primer extension, 20 s at 72°C for A23G and 30 s at 72°C for codon 228. The cycles were followed by a ...
http://cebp.aacrjournals.org/content/11/10/993
*  RRAS2 Gene - GeneCards | RRAS2 Protein | RRAS2 Antibody
genic_upstream_transcript_variant, initiator_codon_variant, missense_variant. rs1000034384. --. 14,319,346(-). T/C. intron_ ...
https://www.genecards.org/cgi-bin/carddisp.pl?gene=RRAS2
*  RNASEL Gene - GeneCards | RN5A Protein | RN5A Antibody
initiator_codon_variant, missense_variant, non_coding_transcript_variant. rs1000067288. --. 182,589,895(-). A/G. upstream_ ...
https://www.genecards.org/cgi-bin/carddisp.pl?gene=RNASEL
*  ETFDH Gene - GeneCards | ETFD Protein | ETFD Antibody
genic_upstream_transcript_variant, initiator_codon_variant, missense_variant. rs121964954. pathogenic, Glutaric acidemia IIC, ...
https://www.genecards.org/cgi-bin/carddisp.pl?id=3483&id_type=hgnc&search=3483
*  SUI1 - PrimePCR Assay and Template | Life Science | Bio-Rad
Translation initiation factor eIF1; component of a complex involved in recognition of the initiator codon; modulates ... Translation initiation factor eIF1; component of a complex involved in recognition of the initiator codon; modulates ...
http://www.bio-rad.com/en-us/prime-pcr-assays/gene/sui1-yeast
*  Comparative chloroplast genomes of Paris Sect. Marmorata: insights into repeat regions and evolutionary implications | BMC...
Mutation and natural selection were the main forces to drive the codon bias pattern of most plastid protein coding genes. ... Mutation bias and selection pressure predominately shaped the codon bias of most genes. And most of the genes underwent ... Codon usage pattern. Most protein-coding genes employed the standard initiator codon AUG; however, six unusual start codons ... the codon usage patterns were determined for 71 distinct protein-coding genes in Sect. Marmorata chloroplast genomes. Codons of ...
https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-018-5281-x?tdsourcetag=s_pcqq_aiomsg
*  Molecular roles and function of circular RNAs in eukaryotic cells | SpringerLink
Kozak M (1986) Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ... but uses a new in-frame stop codons (that lies upstream of the start codons in the parental linear mRNA) [33, 139] (see Fig. 2e ... Given that translation of circRNAs is biased towards using the primary start codon of the gene that is shared with the linear ... ci-ankrd52 was found to decrease the rate by which specific downstream introns with premature stop codons were included in the ...
https://link.springer.com/article/10.1007%2Fs00018-017-2688-5
*  RNA: a few questions | Physics Forums - The Fusion of Science and Community
Well, although AUG is a predominant initiator codon, there are other possibilities such as GUG or CUG. You say the molecule was ... the starting Codon). If the codon AUG is not neccesary for starting the building of a protein, can you please explain how the ... the starting Codon). If the codon AUG is not neccesary for starting the building of a protein, can you please explain how the ... Ok, for Q1, i got what i need (not only AUG is a starting codon).. Now, the other questions.. Q2. introns have a specific ...
https://www.physicsforums.com/threads/rna-a-few-questions.7462/
*  N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana | Molecular...
1986) Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. ... codons, as besides canonical translation initiation at "AUG," these near-cognate start codons represent commonly used start ... initiator Methionine. LTM. lactimidomycin. NME. N-terminal methionine excision. PCV. packed cell volume. PSM. peptide-to- ... 8A-8B). However, when considering only the 28 conserved TIS (i.e. a conserved start codon and N-terminal peptide coding ...
http://www.mcponline.org/content/16/6/1064.full
*  Methods for detecting Hepatitis C virus using polynucleotides specific for same - Chiron Corporation
In the figure the three horizontal dashes above the sequence indicate the position of the putative initiator methionine codon. ... Kozak, "Possible Role of Flanking Nucleotides In Recognition of the AUG Initiator Codon By Eukaryotic Ribosomes," Nucleic Acids ... 1, the three dashes above the sequence indicate the position of the putative initiator methionine codon. ... The first amino acid in the sequence is the putative initiator methionine of the large ORF. The variant amino acids, due to the ...
http://www.freepatentsonline.com/5712088.html
*  Separate Gene Transfers into Pre- and Postsynaptic Neocortical Neurons Connected by mGluR5-Containing Synapses | SpringerLink
Kozak M (1986) Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ... Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes. Nucleic Acids Res 36: ...
https://link.springer.com/article/10.1007%2Fs12031-019-01317-9
*  Marilyn Kozak - Wikipedia
Kozak, M (31 January 1986). "Point mutations define a sequence flanking the AUG initiator codon that modulates translation by ... Kozak, Marilyn (4 October 1993). "Identifying AUG Initiator Codons" (PDF). Citation Classic Commentaries. 36 (40). Retrieved 4 ...
https://en.wikipedia.org/wiki/Marilyn_Kozak