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Encoding schemes used in various carbohydrate sequence | Open-i
Encoding schemes used in various carbohydrate sequence databases. The N-glycan core structure has been chosen to illustrate the ... Figure 2: Encoding schemes used in various carbohydrate sequence databases. The N-glycan core structure has been chosen to ... Figure 2: Encoding schemes used in various carbohydrate sequence databases. The N-glycan core structure has been chosen to ... Conclusion: GlycomeDB is a new, publicly available database for carbohydrate sequences with a unified, all-encompassing ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC2567997_1471-2105-9-384-2&req=4
Glycosciences.de LINUCS - LInear Notation for Unique description of Carbohydrate Sequences
LINUCS: LInear Notation for Unique description of Carbohydrate Sequences Introduction. LINUCS was chosen to fulfil to following ... LINUCS: linear notation for unique description of carbohydrate sequences.. Carbohydr Res 2001, 336: 1-11.. ... The first step is to transform the carbohydrate in SWEET-notation and the second step is to make it unique. ... Primary structure of the carbohydrate chain of soybean agglutinin. A reinvestigation by high resolution 1H NMR spectroscopy. J ...http://glycosciences.de/tools/linucs/
Advancing solutions to the carbohydrate sequencing challenge :: MPG.PuRe
Carbohydrate, NMR, mass spectrometry, liquid chromatography, ion-mobility spectrometry, infrared,br/,spectroscopy; Title: ... Advancing solutions to the carbohydrate sequencing challenge Gray, C. J., Migas, L. G., Barran, P. E., Pagel, K., Seeberger, P ... 2019). Advancing solutions to the carbohydrate sequencing challenge. Journal of the American Chemical Society. doi:10.1021/jacs ... Free keywords: Glycan, Carbohydrate, NMR, mass spectrometry, liquid chromatography, ion-mobility spectrometry, infrared ...https://pure.mpg.de/pubman/faces/ViewItemFullPage.jsp?itemId=item_3152949
Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines
... Seizi Someya,1 Masanori Kakuta,1 ... Carbohydrate-binding proteins are proteins that can interact with sugar chains but do not modify them. They are involved in ... Our method is based on support vector machines (SVMs). We first clarified the definition of carbohydrate-binding proteins and ... We also examined two amino acid grouping methods that enable effective learning of sequence patterns and evaluated the ...https://www.hindawi.com/journals/abi/2010/289301/abs/
Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines
The sequences of carbohydrate-binding protein sequences were collected from UniProtKB  by using a sequence retrieval system ... The sequence homology search was applied to these sequence clusters as follows.(1)For clusters consisting of a single sequence ... sequence the query sequence is predicted as a carbohydrate-binding (noncarbohydrate-binding) protein. The AUC value for this ... we regarded a protein sequence as that of a carbohydrate-binding protein (positive) if it had a sequence identity higher than ...https://www.hindawi.com/journals/abi/2010/289301/
Discrimination of epimeric glycans and glycopeptides using IM-MS and its potential for carbohydrate sequencing - MBCCMS
Discrimination of epimeric glycans and glycopeptides using IM-MS and its potential for carbohydrate sequencing. October 13, ... demonstrating that this technique may prove useful for the sequencing of complex oligosaccharides. ...https://www.mbc.manchester.ac.uk/blog/2015/10/13/flitsch-group/
Carbohydrate-binding sequences of the lectin genes in leguminous plants from the Galegeae and Hedysareae Tribes, Russian...
"Carbohydrate-binding sequences of the lectin genes in leguminous plants from the Galegeae and Hedysareae Tribes, Russian ... Carbohydrate-binding sequences of the lectin genes in leguminous plants from the Galegeae and Hedysareae Tribes. Carbohydrate- ... Carbohydrate-binding sequences of the lectin genes in leguminous plants from the Galegeae and Hedysareae Tribes. Chubukova, O. ... The carbohydrate-binding sequences (CBS) of the lectin genes from legume plants of the genera Astragalus Lam., Oxytropis DC., ...https://www.deepdyve.com/lp/springer_journal/carbohydrate-binding-sequences-of-the-lectin-genes-in-leguminous-INp2BVq6Vk
Congruent Strategies for Carbohydrate Sequencing. 3. OSCAR: An Algorithm for Assigning Oligosaccharide Topology from MS n ...
Congruent Strategies for Carbohydrate Sequencing. 3. OSCAR: An Algorithm for Assigning Oligosaccharide Topology from MS n Data ...https://www.infona.pl/resource/bwmeta1.element.acs-doi-10_1021_ac050726j
Amino acid sequence similarities of carbohydrate active | Open-i
Amino acid sequence similarities of carbohydrate active enzymes identified from the muskoxen rumen metatranscriptome (using all ... pone-0020521-g005: Amino acid sequence similarities of carbohydrate active enzymes identified from the muskoxen rumen ... pone-0020521-g005: Amino acid sequence similarities of carbohydrate active enzymes identified from the muskoxen rumen ... Polyadenylated RNA (mRNA) was sequenced on the Illumina Genome Analyzer II system and 2.8 gigabases of sequences were obtained ...https://openi.nlm.nih.gov/detailedresult.php?img=PMC3105075_pone.0020521.g005&req=4
Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40(T) - DOE...
Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40(T). ... Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40(T) ... The sequences were then biochemically characterized by a team led by Jennifer Doudnas group at UC Berkeley. Read more ... Cas9 needs guide RNA to lead it to the correct sequence to snip-but not all guides are effective. Researchers created a set of ...https://jgi.doe.gov/publication/complete-genome-sequence-of-the-complex-carbohydrate-degrading-marine-bacterium-saccharophagus-degradans-strain-2-40t/
LACTOBACILLUS ACIDOPHILUS NUCLEIC ACID SEQUENCES ENCODING CARBOHYDRATE UTILIZATION-RELATED PROTEINS AND USES THEREFOR - Patent...
0076]Carbohydrate utilization-related nucleotide sequences identified based on their sequence identity to the carbohydrate ... As used herein, "5 leader sequence," "translation leader sequence," or "5 non-coding sequence" refer to that DNA sequence ... sequence identity to the corresponding sequence may be used. Given the coding-strand sequence encoding a carbohydrate ... Sequence Identity The carbohydrate utilization-related and multidrug transporter sequences are members of families of ...http://www.patentsencyclopedia.com/app/20090093021
Variation of Neisseria gonorrhoeae lipooligosaccharide directs dendritic cell-induced T helper responses.
A naturally occurring variation of the terminal carbohydrates on the lipooligosaccharide (LOS) molecule correlates with altered ... Carbohydrate Sequence. Cells, Cultured. Cricetinae. Cricetulus. Dendritic Cells / immunology*. Female. Glycosylation. Humans. ... The carbohydrate moiety of GC LOS is subject to phase variation, creating a GC population with different terminal carbohydrate ... Molecular Sequence Data. Neisseria gonorrhoeae / immunology*. Phenotype. T-Lymphocytes, Helper-Inducer / immunology*. ...http://www.biomedsearch.com/nih/Variation-Neisseria-gonorrhoeae-lipooligosaccharide-directs/19834553.html
In vitro biosynthesis of glycosylphosphatidylinositol in Aspergillus fumigatus.
Carbohydrate Sequence. Coenzyme A / metabolism. Ethanolamines / metabolism. Ethylmaleimide / chemistry. Glycolipids / ... Molecular Sequence Data. Oligopeptides / chemistry. Phosphatidylinositols / biosynthesis, chemistry. Uridine Diphosphate N- ...http://www.biomedsearch.com/nih/In-vitro-biosynthesis-glycosylphosphatidylinositol-in/15568819.html
PPT - The Unbearable Lightness of Biomedical Informatics PowerPoint presentation | free to download - id: 6ed8eb-YjY2N
Carbohydrate Sequence * Nucleotide Sequence. 44. UMLS*Fingers is_a Body Location or Region ...https://www.powershow.com/view4/6ed8eb-YjY2N/The_Unbearable_Lightness_of_Biomedical_Informatics_powerpoint_ppt_presentation
Reinhold VN[au] - PubMed - NCBI
Congruent strategies for carbohydrate sequencing. 3. OSCAR: an algorithm for assigning oligosaccharide topology from MSn data. ... Structural characterization of carbohydrate sequence, linkage, and branching in a quadrupole Ion trap mass spectrometer: ... Detailed characterization of carbohydrate linkage and sequence in an ion trap mass spectrometer: glycosphingolipids. ... Carbohydrate structural isomers analyzed by sequential mass spectrometry.. Ashline DJ, Lapadula AJ, Liu YH, Lin M, Grace M, ...https://www.ncbi.nlm.nih.gov/pubmed?cmd=search&term=Reinhold+VN%5Bau%5D&dispmax=50
Studies directed to understanding the structure of chitosan-metal complexes: Investigations of mono- and disaccharide models...
keywords = "Carbohydrate Sequence, Chitosan, Crystallography, X-Ray, Disaccharides, Indicators and Reagents, Magnetic Resonance ... carbohydrate analysis, chemistry, molecular genetics, nuclear magnetic resonance spectroscopy, synthesis, X ray crystallography ... PLATINUM compounds, CHEMISTRY,, SUPPORTED PALLADIUM CATALYST, CRYSTAL-STRUCTURE, CARBOHYDRATE-RECOGNITION, NITROPHENOL ... Spectroscopy, Metals, Molecular Sequence Data, Monosaccharides, Oligosaccharides, Platinum Compounds, 9012-76-4 Chitosan, ...https://orbit.dtu.dk/en/publications/studies-directed-to-understanding-the-structure-of-chitosan-metal
A sub-population of keratan sulphates derived from bovine articular cartilage is capped with alpha(2-6)-linked N...
Animals ; Carbohydrate Conformation ; Carbohydrate Sequence ; Cartilage, Articular ; Cattle ; Chromatography, Affinity ; ... Keratan Sulfate ; Lectins ; Magnetic Resonance Spectroscopy ; Molecular Sequence Data ; N-Acetylneuraminic Acid ; Plant Lectins ...http://eprints.lancs.ac.uk/22860/
Remediated Sequence - 1A0H: THE X-RAY CRYSTAL STRUCTURE OF PPACK-MEIZOTHROMBIN DESF1: KRINGLE/THROMBIN AND...
THE X-RAY CRYSTAL STRUCTURE OF PPACK-MEIZOTHROMBIN DESF1: KRINGLE/THROMBIN AND CARBOHYDRATE/KRINGLE/THROMBIN INTERACTIONS AND ... View Sequence & DSSP Image. Download Sequence Chain Image. Chain Info. Polymer: 1. Length: 159 residues. Chain Type: ... View Sequence & DSSP Image. Download Sequence Chain Image. Chain Info. Polymer: 2. Length: 259 residues. Chain Type: ... Sequence Display for the Entities in PDB 1A0H The graphical representation below shows this entrys sequences as reported in ...http://www.rcsb.org/pdb/explore/remediatedSequence.do?structureId=1A0H
Introduction to glycoscience - Case Studies: Glycoscience and Biotherapeutics | Coursera
Glycoscience is the science and technology of carbohydrates, which are the most abundant biological molecules on Earth and make ... Human fertilization is mediated by a specific carbohydrate sequence. Its called sialyl-Lewis X. ... Carbohydrates provide the largest renewable biomass on Earth and are the economically viable and sustainable alternative to ... Carbohydrates are produced in the leaves of plants, from little more than water and ...https://www.coursera.org/lecture/industrial-biotech/introduction-to-glycoscience-sFxC9
GlycomeDB - integration of open-access carbohydrate structure databases | BMC Bioinformatics | Full Text
GlycomeDB is a new, publicly available database for carbohydrate sequences with a unified, all-encompassing structure encoding ... More than 100000 datasets were imported, resulting in more than 33000 unique sequences now encoded in GlycomeDB using the ... Funding for further development of the Complex Carbohydrate Structure Database (CCSD or CarbBank) ceased in 1997, and since ... For each database, different encoding schemes for residues and sequence topology were designed. Therefore, it is virtually ...https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-9-384
GlycoRDF - Carbohydrate Format - Classes | NCBO BioPortal
http://purl.jp/bio/12/glyco/glycan#carbohydrate_format. comment. Instances of this class are the carbohydrate sequence formats ...http://bioportal.bioontology.org/ontologies/GLYCORDF?p=classes
retinoblastomas familial drug therapy 2000:2010[pubdate] *count=100 - BioMedLib™ search engine
Molecular Sequence. A220.127.116.11.1. Nucleotide Sequence. A18.104.22.168.2. Amino Acid Sequence. A22.214.171.124.3. Carbohydrate Sequence. A2.1. ... Carbohydrate Conformation. Carbohydrate Sequence. Cell Line, Tumor. Cell Survival / drug effects. Cell Survival / physiology. ... Carbohydrate. A126.96.36.199.1.9. Lipid. A188.8.131.52.1.9.1. Steroid. A184.108.40.206.1.9.2. Eicosanoid. A220.127.116.11.2. Inorganic Chemical. A1.4. ... Molecular Sequence Data. Molecular Structure. Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization. Structure- ...http://www.bmlsearch.com/?kwr=retinoblastomas+familial+drug+therapy+2000:2010%5Bpubdate%5D&cxts=100&stmp=b1
Glycoinformatics | Springer for Research & Development
This book provides current glycoinformatics methods and protocols used to support the determination of carbohydrate structures ... in biological samples as well as carbohydrate structure databases, the in ... and analyzing carbohydrate sequences and their taxonomy using computers. Written in the highly successful Methods in ... Branched structures Carbohydrate structure databases Carbohydrates Glycan data Glycobiology Glycolipids Glycoproteins Protein- ...https://rd.springer.com/book/10.1007/978-1-4939-2343-4