Anon 11:28, Im not sure what point you are responding to. I do not hold to the idea that Gods existence can be proven by scientific examination. Nor can science disproof the existence of God. God is just not the sort of thing that science is qualified to investigate. Science is properly limited to investigating and explaining the physical universe.. Delete ...
et nunc Domine omnipotens Deus Israhel anima in angustiis et spiritus anxius clamat ad te audi Domine et miserere quia Deus es misericors et miserere
De Doncker, H., Donnay, S., Lampaert, K., Proesmans, F., Swings, K., Plas, van der, G., Gielen, G., Sansen, W.M.C., Leenaerts, D.M.W., Veslinovic, P., Buytaert, M., Buckens, M., Marent, K. & Das, C. (1993). Analog module generator for space applications. Proceeding of IEEE/PRORISC symposium on Circuits, Systems and Signal Processing, Houthalen - Belgie, March 24-25 1993 (pp. 141-146). ...
We have been incorporating as much chant as we can manage at Mass here for some time now, from the Mass setting, which everyone can join in with, to the Introit, Offertory and Communion chants of the Missal - though for these you do need the talents of those willing and able to assist for this (providentially - and I use that term in its proper sense - this is available to us here in this little parish). It really does help to set the "tone" of the liturgy as one of solemnity and grandeur. Not that it is necessarily terribly "high-brow" - one or two parents try each week to restrain their little ones from joining in with quite so much gusto! The point is - we are doing it. I recall in another parish the bishop on visitation attending a weekday Mass and commenting afterwards that the twenty (mostly elderly) folk attending Mass and singing the Mass parts ( it would have been Mass XVIII and the Pater noster) were not actually very good at creating an harmonious and beautiful sound. The implication ...
The Lord says to Isaiah, "…see, I am doing something new! Now it springs forth, do you not perceive it?" This astonishing exclamation by the Lord raises three questions: 1) what is this new thing that the Lord is doing?; 2) what does He mean by "now" when He says that this new thing is springing forth now?; and 3) do we perceive this new thing as it springs forth? As always, scripture is best read as both a history of the faithful response our ancestors to Gods grace and as a script for our own response to the identical grace. Given this, what are we to make of this revelation of immediate newness? On the eve of our Lenten trek, we think first of sin and repentance, the old and the new. Fair enough. Reading the story of the healing of the paralytic in light of Isaiah, lets think as well on disease and healing, also, the old and the new. But lets put all four of these themes (sin, repentance, disease, and healing) into a larger theme: as divinely-given purpose as creatures. Who and what are ...
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Identifying reliable domain-domain interactions will increase our ability to predict novel protein-protein interactions, to unravel interactions in protein complexes, and thus gain more information about the function and behavior of genes. One of the challenges of identifying reliable domain-domain interactions is domain promiscuity. Promiscuous domains are domains that can occur in many domain architectures and are therefore found in many proteins. This becomes a problem for a method where the score of a domain-pair is the ratio between observed and expected frequencies because the protein-protein interaction network is sparse. As such, many protein-pairs will be non-interacting and domain-pairs with promiscuous domains will be penalized. This domain promiscuity challenge to the problem of inferring reliable domain-domain interactions from protein-protein interactions has been recognized, and a number of work-arounds have been proposed. This paper reports on an application of Formal Concept Analysis to
1] Tompa P (2011) Unstructural biology coming of age. Curr Opin Struct Biol 21: 419; [2] Babu MM et al. (2011) Intrinsically disordered proteins: regulation and disease. Curr Opin Struct Biol 21:432; [3] Diella F et al. (2008) Understanding eukaryotic linear motifs and their role in cell signaling and regulation. Front Biosci 13:6580; [4] Davey NE et al. (2012) Attributes of short linear motifs. Mol Biosyst 8:268; [5] Davey NE, Trave G & Gibson TJ (2011) How viruses hijack cell regulation. Trends Biochem Sci 36:159; [6] Davey NE, Edwards RJ & Shields DC (2010) Computational identification and analysis of protein short linear motifs. Front Biosci 15:801; [7] Davey NE, Shields DC & Edwards RJ (2006): SLiMDisc: short, linear motif discovery, correcting for common evolutionary descent. Nucleic Acids Res. 34:3546; [8] Edwards RJ, Davey NE & Shields DC (2007): SLiMFinder: A probabilistic method for identifying over-represented, convergently evolved, short linear motifs in proteins. PLoS ONE 2:e967; ...
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Learn about how Three Domain System is used to classify biological organisms, and how the systems are made up of six distinct categorizations of kingdoms.
When the improved inter-domain routing protocol is deployed, an immediate decrease in the number routing table entries should occur, followed by a significant reduction in the rate growth of routing table size (for default-free routers). ...
trachomatis Inc proteins. To know whether this result also applied to C. pneumo niae, selleck chem inhibitor we raised antibodies against 7 putative Inc proteins from C. pneumoniae as GST tagged fusion proteins. As a control we used antibodies against the C. pneumoniae Inc protein CPn0186. The anti fusion protein antibodies were used to localize the endogenous proteins in cells infected by C. pneumoniae for 96 hours. In contrast to the inclusion labeling observed with anti CPn0186 antibodies, none of the 7 sera stained the inclusion membrane. The detection of endogenous antigens was removed by pre absorption with corresponding GST fusion proteins but not heterologous Inhibitors,Modulators,Libraries GST fusion proteins, demonstrating the specificity of the antibodies.. While they did not stain the inclusion membrane, the 7 sera labeled the bacteria, demonstrating that the corresponding proteins Inhibitors,Modulators,Libraries are expressed at this stage of infection, and remain bac teria ...
To test the efficacy of this model, we needed networks with large numbers of known protein-protein interactions. A complication in this process arises in that, even if a large number of interactions are known, not all of them have a defined domain composition. For this work, we used Saccharomyces cerevisiae protein-protein interactions taken from the DIP (http://dip.doe-mbi.ucla.edu/; Xenarioset al. 2000). We determined the domains involved in each interaction by analyzing protein sequences with hmmpfam (Batemanet al. 2000), a publicly available software tool that referenced 2015 domains at the time of this analysis. We analyzed a total of 642 protein-protein interactions (all with at least 1 domain) and then used them to determine the domain-domain interaction probabilities. Data (in this case a list of undirected protein-protein interactions) used for studying the effect of vertex removal on network edge distributions were taken from the Fields Lab home page ...
Domains are the most important functional units in proteins and a significant proportion of PPIs occur through domain-domain interactions (DDI). Evidence accumulated in the last 35 years has shown that domains can spread among proteins in a process called domain shuffling 9, 10. It is generally accepted, at least for eukaryotes, that the recombinations that lead to domain shuffling are mediated by intronic sequences 11-13 through exon shuffling events 14.. Domain shuffling has been identified as one of the major mechanisms leading to the formation of new proteins throughout evolution 11, 12, 15. Bursts of domain shuffling events are clearly associated with the emergence of biological novelty, such as multi-cellularity. Most of the proteins that compose the extra-cellular matrix were built by domain shuffling 15-17. The same is true for cell surface receptors, whose expansion in multi-cellular animals with a more developed nervous system is clearly associated with domain shuffling 18.. A feature ...
BACKGROUND: The ferlin gene family possesses a rare and identifying featureconsisting of multiple tandem C2 domains and a C-terminal transmembrane domain.Much currently remains unknown about the fundamental function of this genefamily, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease. The availability of genome sequences from a wide range of species makes it possible to explore the evolutionof the ferlin family, providing contextual insight into characteristic featuresthat define the ferlin gene family in its present form in humans. RESULTS: Ferlingenes were detected from all species of representative phyla, with two ferlinsubgroups partitioned within the ferlin phylogenetic tree based on the presenceor absence of a DysF domain. Invertebrates generally possessed two ferlin genes(one with DysF and one without), with six ferlin genes in most vertebrates (threeDysF, three non-DysF). Expansion of the ferlin gene family is ...
Protein-protein interactions in cluster 2 signature genes. Protein-protein interactions were downloaded from database HINT which removes low-quality/erroneous i
The amazing variety of protein functions are often covered by protein complexes, so understanding protein-protein interactions means coming deeply into the functional role of proteins in life
Keskin, Z., Gursoy, A., Ma, B. & Nussinov, R. Principles of protein-protein interactions: What are the preferred ways for proteins to interact? Chem. Rev. 108, 1225-1244 (2008).
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2F4M: The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs
BACKGROUND: Large datasets of protein interactions provide a rich resource for the discovery of Short Linear Motifs (SLiMs) that recur in unrelated proteins. However, existing methods for estimating the probability of motif recurrence may be biased by the size and composition of the search dataset, such that p-value estimates from different datasets, or from motifs containing different numbers of non-wildcard positions, are not strictly comparable. Here, we develop more exact methods and explore the potential biases of computationally efficient approximations.. RESULTS: A widely used heuristic for the calculation of motif over-representation approximates motif probability by assuming that all proteins have the same length and composition. We introduce pv, which calculates the probability exactly. Secondly, the recently introduced SLiMFinder statistic Sig, accounts for multiple testing (across all possible motifs) in motif discovery. However, it approximates the probability of all other possible ...
NanoBRET protein interaction assays use NanoLuc luciferase as the energy donor to create sensitive BRET-based protein:protein interaction assays.
This article describes a HaloTag® bioluminescent pull-down workflow for validating protein:protein interaction results obtained with NanoBRET™ assays.
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Co-operativity in protein-protein association. The structure and stability of the actin filament.s profile, publications, research topics, and co-authors