Looking for online definition of Succinivibrio dextrinosolvens in the Medical Dictionary? Succinivibrio dextrinosolvens explanation free. What is Succinivibrio dextrinosolvens? Meaning of Succinivibrio dextrinosolvens medical term. What does Succinivibrio dextrinosolvens mean?

Succinimonas are smooth and rod-shaped. They are motile. Succinivibrio are rod-shaped motile organisms with polar flagella. They have a curved spiral shape. Ruminobacter are rod-shaped. They are nonmotile. Cytochromes have not been detected in these organisms. Succinimonas are anaerobic organisms that break down starch. Succinivibrio are anaerobic bacteria that ferment glucose. They obtains nitrogen through ammonia. Ruminobacter are anaerobic organisms. They utilize molecules such as maltose, maltodextrins, and starch for energy. These organisms do not form spores. Their life cycle is typical of most bacteria, with reproduction by division. ...

Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.

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1B8Z: Cloning, overproduction, purification and crystallization of the DNA binding protein HU from the hyperthermophilic eubacterium Thermotoga maritima.

1B26: Crystal structure of glutamate dehydrogenase from the hyperthermophilic eubacterium Thermotoga maritima at 3.0 A resolution.

TY - JOUR. T1 - Large plasmids in ruminal strains of Selenomonas ruminantium. AU - Fliegerova, K AU - Benada, O AU - Flint, H J PY - 1998/4. Y1 - 1998/4. N2 - The plasmid content of six different isolates of Selenomonas ruminantium from the rumen of sheep, cows or goats was examined by electron microscopy. In addition to small plasmids (, 12 kb) studied previously, all six strains contained at least one plasmid larger than 20 kb. Plasmid sizes of 1.4, 2.1, 2.4, 5.0, 6.2, 20.4, 20.8, 22.7, 33.3, 29.3, 30.7, 34.4 and 42.6 kb were estimated from contour length measurements. DNA-DNA hybridization experiments revealed homology among the large plasmids from five strains, while the 20.8 kb plasmid from a sixth isolate showed no apparent relationship with the plasmids of the other strains.. AB - The plasmid content of six different isolates of Selenomonas ruminantium from the rumen of sheep, cows or goats was examined by electron microscopy. In addition to small plasmids (, 12 kb) studied previously, ...

The nucleotide positions of the target site for the forward primer on T. bryantii 16S rRNA gene sequences were 380-400 while those of the reverse primer were 934-953, yielding a 575-bp PCR product. The primer set was designed to cover all rumen Treponema and named g-TrepoF. The online basic local alignment search tool (blast) program (http://blast.ncbi.nlm.nih.gov/Blast.cgi) was used to determine the specificity of the forward primer.. The specificity of the primers was further tested by PCR amplification using genomic DNA from pure cultures of 16 representative rumen bacterial strains including T. bryantii ATCC33254, F. succinogenes ATCC19169, Ruminococcus albus 8, Ruminococcus flavefaciens C94, Prevotella ruminicola 23, Prevotella bryantii B14, Prevotella brevis GA33, Butyrivibrio fibrisolvens. H17c, B. fibrisolvens D1, Eubacterium ruminantium Silmitasertib GA195, Selenomonas ruminantium GA192, Succinivibrio dextrinosolvens ATCC19716, Succinimonas amylolytica ATCC19206, Streptococcus bovis ...

View more ,A new extremely halophilic chemoorganotrophic bacterium (strain H200T [T = type strain]) was isolated from the hypersaline sediments of Retba Lake in Senegal. This organism was a sluggishly motile, rod-shaped, non-spore-forming, gram-negative, obligate anaerobe that grew optimally at 40 degrees C in the presence of 180 to 200 g of NaCl per liter. The DNA base composition was 32 mol% guanine plus cytosine. The fermentation products from glucose were ethanol, acetate, H2, and CO2. Yeast extract was required for growth. The fermentable substrates included D-fructose, galactose, D-xylose, cellobiose, lactose, maltose, sucrose, starch, D-mannitol, glycerol, and Casamino Acids. On the basis of the results of a 16S rRNA sequence analysis, strain H200T was found to be related to Haloanaerobium species. The 16S rRNA sequence of strain H200T differed from the sequences of the three previously described Haloanaerobium species, and strain H200T also differed from these organisms in its NaCl range ...

Thermotoga maritima ATCC ® 43589D-2™ Designation: Genomic DNA from Thermotoga maritima strain MSB8 TypeStrain=True Application:

Thermotoga maritima ATCC ® 43589D-2™ Designation: Genomic DNA from Thermotoga maritima strain MSB8 TypeStrain=True Application:

Fluorescent-dye-conjugated oligonucleotides were used to classify 14 Fibrobacter strains by fluorescence microscopy. On the basis of partial 16S rRNA sequences of six Fibrobacter strains, four hybridization probes were designed to discriminate between the species Fibrobacter succinogenes and Fibrobacter intestinalis and to identify F. succinogenes subsp. succinogenes. After in situ hybridization to whole cells of the six sequenced strains, epifluorescence microscopy confirmed probe specificity. The four probes were then used to make presumptive species and subspecies assignments of eight additional Fibrobacter strains not previously characterized by comparative sequencing. These assignments were confirmed by comparative sequencing of the 16S rRNA target regions from the additional organisms. Single-mismatch discrimination between certain probe and nontarget sequences was demonstrated, and fluorescent intensity was shown to be enhanced by hybridization to multiple probes of the same specificity. ...

Investigators at Burnham Institute for Medical Research (Burnham), University of California, San Diego, The Scripps Research Institute (TSRI), Genomics Institute of the Novartis Research Foundation (GNF) and other institutions have constructed a complete model, including three dimensional protein structures, of the central metabolic network of the bacterium Thermotoga maritima (T. maritima). This is the first time scientists have developed such a comprehensive model of a metabolic network overlaid with an atomic resolution of network proteins. The analysis of the model, among others, highlights the important role of a small number of essential protein shapes, lending new insights into the evolution of protein networks and the functions within these networks. The study was published in the journal Science on September 18.. Combining biochemical studies, structural genomics and computer modeling, the researchers deciphered the shapes, functions and interactions of 478 proteins that make up T. ...

Clare J. McCleverty, Linda Columbus, Andreas Kreusch, Scott A. Lesley, Structure and ligand binding of the soluble domain of a Thermotoga maritima membrane protein of unknown function TM1634, Protein Science, 2008, 17, 5, ...

Huber, R., Langworthy, T.A., Konig, H., Thomm, M., Woese, C.R., Sleytr, U.B., and Stetter, K.O. Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90°C. Arch. Microbiol. (1986) 144:324-333 ...

p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.,/p> ,p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.,/p> ,p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).,/p> ,p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x,sup>64,/sup> + x,sup>4,/sup> + x,sup>3,/sup> + x + 1. The algorithm is described in the ISO 3309 standard. ,/p> ,p class=publication>Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.,br /> ,strong>Cyclic redundancy and other checksums,/strong>,br /> ,a href=http://www.nrbook.com/b/bookcpdf.php>Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993),/a>),/p> Checksum:i ...

Coloured scanning electron micrograph (SEM) of Cellulose degrading rumen bacterium Fibrobacter succinogenes. Fibrobacter succinogenes, also known as Bacteroides succinogenes, is one of the most important cellulolytic bacterium (cellulose degrading bacteria) in animal intestinal tracts (rumen). Herbivorous ruminant animals have a complex stomach divided into chambers. One chamber, the rumen, contains symbiotic bacteria that break down cellulose in plants, making plant matter digestible. F. succinogenes actively adheres to cellulose. F. succinogenes produces both a series of cellulose-binding proteins, some of which have endoglucanase activity and a thin glycoprotein glycocalyx that results in strong adhesion to cellulose. Fibrobacter sp. are rod shaped, obligate anaerobic, gram-negative, saccharolytic bacteria. Magnification: x3,000 when shortest axis printed at 25 millimetres. - Stock Image C032/2319

Butyrivibrio fibrisolvens ced1 protein: shows cellodextrinase activity & rapidly hydrolyzes short-chain cellodextrins to yield either cellobiose or cellobiose & glucose as end products; releases cellobiose from p-nitrophenyl-beta-D-cellobioside & is not inhibited by methyl cellulose; amino acid sequence given in first source; from Butyrivibrio fibrisolvens H17c

The Butyrivibrio fibrisolvens/Escherichia coli shuttle vector pBHerm has been modified to produce a plasmid (pBHE) that can be used for the identification and characterization of promoters in B. fibrisolvens. pBHE allows the insertion of a test promoter immediately upstream of a promoterless erythromycin resistance gene (ermAM). The efficacy of the pBHE plasmid in isolating and characterizing promoters was tested by inserting the flagellin gene (flaA) promoter from B. fibrisolvens OR77. Transcription of the ermAM gene from the flaA promoter was significantly higher than that observed when the ermAM gene was under the control of its own promoter. The flagelling gene of OR77 appears to be transcribed from two different promoters that produce transcripts initiating approximately 130 bp apart. Two mutant flaA promoter constructs, containing mutations in the −10 and −35 regions of either of the two putative promoter regions, showed drastic alterations in both the origin and amounts of the two ...

The competition and inhibition studies suggest that the catalytic site of L/ODC for the recognition of both substrates is identical (see Supplemental Figure 3 online). The evidence for both LDC and ODC activities being ascribed to the same active site have also been reported in a L/ODC from the bacterium Selenomonas ruminantium, which is capable of decarboxylating both l-Lys and l-Orn with similar kinetic properties, and in the ODC from N. glutinosa (Takatsuka et al., 1999; Lee and Cho, 2001). Unlike other eukaryotic ODCs that are almost exclusively specific for l-Orn over l-Lys (Lee et al., 2007b), the three L/ODCs from QA-producing plants proteins exhibited decarboxylase activities toward both l-Lys and l-Orn, with similar kinetic properties. These results imply that the active site of L/ODC is relatively tolerant to variable side chains of substrate (C5 for Lys and C4 for Orn) for the intermediary Schiff-base formation.. Evaluation of the L/ODC-F344H mutant enzyme activity points out that ...

PROTONEN-TRANSPORTIERENDE ATP-SYNTHASE (ENZYME); ESCHERICHIA (MIKROBIOLOGIE); HETEROLOGE GENEXPRESSION, EXPRESSION VON FREMDGENEN (GENETIK); PROPIONIGENIUM (MIKROBIOLOGIE); SUBSTRATSPEZIFITÄT (ENZYME, ENZYMOLOGIE); STRUKTUR-FUNKTIONSBEZIEHUNG DER PROTEINE UND PEPTIDE; ENZYMSTRUKTUR + ENZYMKOMPONENTEN; PROTON-TRANSPORTING ATP SYNTHASE (ENZYMES); ESCHERICHIA (MICROBIOLOGY); HETEROLOGOUS GENE EXPRESSION + EXPRESSION OF FOREIGN GENES (GENETICS); PROPIONIGENIUM (MICROBIOLOGY); SUBSTRATE SPECIFICITY (ENZYMES, ENZYMOLOGY); STRUCTURE-FUNCTION RELATIONSHIP OF PROTEINS AND PEPTIDES; ENZYME STRUCTURE + ENZYME ...

Peptidoglycan is a macromolecule made of long aminosugar strands cross-linked by short peptides. It forms the cell wall in bacteria surrounding the cytoplasmic membrane. The glycan strands are typically comprised of repeating N-acetylglucosamine (GlcNAc) and N-acetylmuramic acid (MurNAc) disaccharides. Each MurNAc is linked to a peptide of three to five amino acid residues. Disaccharide subunits are first assembled on the cytoplasmic side of the bacterial membrane on a polyisoprenoid anchor (lipid I and II). Polymerization of disaccharide subunits by transglycosylases and cross-linking of glycan strands by transpeptidases occur on the other side of the membrane. Bacterial cell wall biosynthesis inhibitors form a major class of antibiotics ...

Bronchiectasis is characterized by mild to moderate airflow obstruction that worsens over time. The condition often begins in childhood; however, symptoms may not occur until months or even years after the repeated lung infections begin. It is proposed that an insult typically from the environment impairs mucociliary clearance of mucus and foreign substance resulting in microbial colonization in the airway. Microbial colonization leads to chronic infections causing inflammation. Chronic inflammation results in tissue damage to the cilia and further impair mucociliary motility. This process leads to a vicious cycle of repetitive infections with progressive inflammation and tissue damage. A variation in microbial flora within the lungs appears to change with the severity of the condition. The most common pathogenic bacteria discovered in bronchiectasis patients is haemophilus influenzae, a gram-negative anaerobic bacterium, and in patients at a more severe stage, pseudomonas aeruginosa which is ...

Lineage: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter; Aggregatibacter ...

original description Huber, R., Langworthy, T.A., Konig, H., Thomm, M., Woese, C.R., Sleytr, U.B., and Stetter, K.O. Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90°C. Arch. Microbiol. (1986) 144:324-333. [details] ...

a cell-free particulate preparation from butyrivibrio fibrisolvens was used to study the relative rates of isomerization of all cis,cis-methylene-interrupted isomers of octadecadienoic acid. only two isomers were found to be substrates, the 9,12-isomer was isomerized at 41 +/- 4 mumol/min per mg protein, and the 2,5-isomer at 11 +/- 1 mumol/min per mg. the product of the isomerization of the 2,5-isomer had an ultraviolet absorption maximum at 233 nm indicating that it was the 3,5-isomer. the iso ...

Genetic experiments in bacteria have shown the suf operon is involved in iron homeostasis and the oxidative stress response. The sufB and sufC genes that always occur together in bacteria are also found in plants, and even the malaria parasite, associated with the plastid organelle. Although the suf …

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Properties of Branching Enzyme from Hyperthermophilic Bacterium, Aquifex aeolicus, and Its Potential for Production of Highly-branched Cyclic Dextrin. （2003 ...

Overview of Anaerobic Bacteria - Learn about the causes, symptoms, diagnosis & treatment from the Merck Manuals - Medical Consumer Version.

The ruminal bacteria, Megasphaera elsdenii and Selenomonas ruminantium, were subjected to total organic nutrient starvation after growth in batch and/or continuous culture. Both organisms exhibited a very limited survival capacity in comparison to other bacteria reported in the literature. This capacity appears to have been at least partially influenced by pre-starvation growth conditions and levels of cell constituents. Because these conditions were constantly changing during batch culture growth, continuous culture growth was found to be more suitable as a basis for starvation studies. Depending on pre-starvation growth conditions, both M. elsdenii and S. ruminantium appeared to break down carbohydrate, RNA and/or DNA preferentially during starvation, suggesting that a degradation of carbohydrate storage material, excess ribosomes and/or extra genomes may have taken place. The role of protein degradation in survival of these organisms, if any, is unclear. Cellular RNA levels always exhibited ...

Looking for online definition of tetrachloromethane in the Medical Dictionary? tetrachloromethane explanation free. What is tetrachloromethane? Meaning of tetrachloromethane medical term. What does tetrachloromethane mean?

View more ,Periodontal disease is a group of chronic inflammatory diseases affecting tooth-supporting tissues. The early stage is the presence of biofilm-associated gingival inflammation which, in patients having juvenile systemic lupus erythematosus (SLE), might function as a reservoir of anaerobic Gram-negative bacteria such as Porphyromonas gingivalis. Porphyromonas gingivalis has been associated with an increased level of anticardiolipin and anti-b2-glycoprotein antibodies in patients with SLE, which implies periodontal disease as a modifiable risk factor for SLE morbility1 . Besides, Porphyromonas gingivalis also express functional endogenous Peptidylarginine deiminase (PAD) enzymes, which catalyzes a citrullination reaction that can lead to formation of citrullinated peptides. PAD can frequently be recognized in sera of patients with rheumatoid arthritis, systemic lupus erythematosusand primary Sjögren syndrome2 . Laugisch et al. 3 reported that PAD secreted by Porphyromonas gingivalis ...

Thermotoga neapolitana is a hyperthermophilic bacterium that branches very early from the Bacterial lineage, suggesting that some of its features may be ancestral to all bacteria. Physiological studies in this ecologically and evolutionarily intriguing organism would be facilitated by development of a gene transfer system.^ Uniform growth and high plating efficiencies of T. neapolitana were achieved using a mineral medium with the addition of 0.7% Gelrite (a solidifying agent) and cysteine (a reducing agent). A number of analog-resistant and auxotrophic mutants were generated to serve as markers for gene transfer. In addition, a vector was constructed conferring chloramphenicol resistance that could serve as a potential shuttle vector between Thermotoga and Escherichia coli. Methods of gene transfer tested included conjugation, natural transformation and electrotransformation. No transformants were observed using any method; electrotransformation was attempted under a variety of biological,

Metabolic pathways have traditionally been described in terms of biochemical reactions and metabolites. With the use of structural genomics and systems biology, we generated a three-dimensional reconstruction of the central metabolic network of the bacterium Thermotoga maritima. The network encompassed 478 proteins, of which 120 were determined by experiment and 358 were modeled. Structural analysis revealed that proteins forming the network are dominated by a small number (only 182) of basic shapes (folds) performing diverse but mostly related functions. Most of these folds are already present in the essential core (approximately 30%) of the network, and its expansion by nonessential proteins is achieved with relatively few additional folds. Thus, integration of structural data with networks analysis generates insight into the function, mechanism, and evolution of biological networks.. ...

Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil ...

You searched for: Author Teather, R.M. Remove constraint Author: Teather, R.M. Publication Year 1996 Remove constraint Publication Year: 1996 Subject Butyrivibrio fibrisolvens Remove constraint Subject: Butyrivibrio fibrisolvens Subject phylogeny Remove constraint Subject: phylogeny Subject Odocoileus virginianus Remove constraint Subject: Odocoileus virginianus Subject chemotaxonomy Remove constraint Subject: chemotaxonomy Text Availability Citation in PubAg Remove constraint Text Availability: Citation in PubAg ...

This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron ...

The Adams Lab is part of the Department of Biochemistry and Molecular Biology at The University of Georgia. The laboratory is housed the Life Sciences Complex on South campus and has been in operation for nearly a decade. The group has a general interest in anaerobic microorganisms, particularly archaea and particularly those growing near and above 100 C, the so-called hyperthermophiles. The archaeon Pyrococcus furiosus and the bacterium Thermotoga maritima are being used as model systems. Projects involve the physiology, metabolism, enzymology, bioinorganic chemistry, and functional and structural genomics of these organisms. For example, the genome of P. furiosus contains approximately 2,200 ORFs, but the functions of much less than half of them are known.

This page contains information on the chemical 2-Propenoic acid, ethyl ester, telomer with tetrachloromethane including: 2 synonyms/identifiers.

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antolina neapolitana Edward Bowles can get on in ordinary soil, which can be poor and dry. Not to be planted in mass like an ordinary santolina.

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Haemophilus influenzae are fastidious facultatively anaerobic Gram-negative bacteria that cause a range of human infections including otitis media, meningitis, epiglottitis and pneumonia [1, 2]. H. influenzae lacks all enzymes in the biosynthetic pathway for the porphyrin ring and as a result is unable to synthesize protoporphyrin IX (PPIX), the immediate precursor of heme. Since H. influenzae cannot synthesize PPIX the organism has an absolute growth requirement for an exogenous source of PPIX or heme [3, 4]. As a result of this growth requirement H. influenzae has evolved a complex multifunctional array of uptake mechanisms to ensure that it is able to utilize available porphyrin in vivo [5]. One protein shown to be involved in utilization of heme by H. influenzae is the heme binding lipoprotein HbpA [6-8]. HbpA was initially identified as a potential constituent of a heme acquisition pathway following transformation of an H. influenzae genomic DNA library into Escherichia coli and screening ...

The vaginal ecology of pregnant women does not differ substantially from that of women who are not pregnant. However, studies conducted over the last decade have established that most of the organisms that infect amniotic fluid or cause chorioamnionitis are derived from the lower genital tract. In addition, recent studies have established that some organisms that are considered part of the normal vaginal microflora are associated with an increased risk of preterm or low-birth-weight delivery or both when they are present at high density in the vagina. The chapter discusses the frequency of genital microorganisms in women of different ethnic groups. Bacterial vaginosis is a condition in which high concentrations of vaginal lactobacilli are replaced by a mixed population of Gardnerella vaginalis, anaerobic gram-negative rods and cocci, and genital mycoplasmas. A number of studies have evaluated the association between genital or urinary tract colonization with group B streptococci and adverse outcomes of

Three strictly anaerobic, Gram-positive, non-spore-forming, rod-shaped, motile bacteria, designated strains ACB1(T), ACB7(T) and ACB8, were isolated from human subgingival dental plaque. All strains required yeast extract for growth. Strains ACB1(T) and ACB8 were able to grow on glucose, lactose, ma …

Bifidobacterium ruminantium strain DSM 6489 putative xylulose5-phosphate/fructose 6-phosphate phosphoketolase (xfp) gene, partial ...

Propionibacterium species are nonsporulating, gram-positive anaerobic bacilli that are considered commensal bacteria on the skin. They are usually nonpathogenic and are common contaminants of blood and body fluid cultures.

General Information: Rod-shaped thermophilic marine bacterium that metabolizes many simple and complex carbohydrates including glucose, sucrose, starch, cellulose, and xylan. This hyperthermophilic organism was originally isolated from a geothermal marine area near Vulcano, Italy. Thermotoga maritima is a hyperthermophile with an optimum growth temperature of 80 degrees C. This organism, a member of the Thermotogales, has the characteristic sheath-like envelope which extends beyond the cell wall. These organisms are heterotrophs are able to use a wide range of carbohydrates. ...

Anaerobic bacteria are the primary cause of bad breath. Controlling them will give you a cleaner, fresher mouth. Visit our site for more information.

SWISS-MODEL Repository entry for Q9WZP2 (MARIT_THEMA), Maritimacin. Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)

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