A species of gram-negative, aerobic bacteria isolated from soil and water as well as clinical specimens. Occasionally it is an opportunistic pathogen.
A genus of gram-negative, aerobic, rod-shaped bacteria widely distributed in nature. Some species are pathogenic for humans, animals, and plants.
A species of gram-negative, aerobic, rod-shaped bacteria commonly isolated from clinical specimens (wound, burn, and urinary tract infections). It is also found widely distributed in soil and water. P. aeruginosa is a major agent of nosocomial infection.
Infections with bacteria of the genus PSEUDOMONAS.
A widely used industrial solvent.
A species of nonpathogenic fluorescent bacteria found in feces, sewage, soil, and water, and which liquefy gelatin.
Oxidases that specifically introduce DIOXYGEN-derived oxygen atoms into a variety of organic molecules.
A family of isomeric, colorless aromatic hydrocarbon liquids, that contain the general formula C6H4(CH3)2. They are produced by the destructive distillation of coal or by the catalytic reforming of petroleum naphthenic fractions. (From McGraw-Hill Dictionary of Scientific and Technical Terms, 5th ed)
Catalyzes the oxidation of catechol to 2-hydroxymuconate semialdehyde in the carbazole and BENZOATE degradation via HYDROXYLATION pathways. It also catalyzes the conversion of 3-methylcatechol to cis, cis-2-hydroxy-6-oxohept-2,4-dienoate in the TOLUENE and XYLENE degradation pathway. This enzyme was formerly characterized as EC 1.13.1.2.
Elimination of ENVIRONMENTAL POLLUTANTS; PESTICIDES and other waste using living organisms, usually involving intervention of environmental or sanitation engineers.
Non-heme iron-containing enzymes that incorporate two atoms of OXYGEN into the substrate. They are important in biosynthesis of FLAVONOIDS; GIBBERELLINS; and HYOSCYAMINE; and for degradation of AROMATIC HYDROCARBONS.
Proteins found in any species of bacterium.
A group of 1,2-benzenediols that contain the general formula R-C6H5O2.
The functional hereditary units of BACTERIA.
Derivatives of BENZOIC ACID. Included under this heading are a broad variety of acid forms, salts, esters, and amides that contain the carboxybenzene structure.
A bicyclic monoterpene ketone found widely in plants, especially CINNAMOMUM CAMPHORA. It is used topically as a skin antipruritic and as an anti-infective agent.
Any of the processes by which cytoplasmic or intercellular factors influence the differential control of gene action in bacteria.
Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories.
An enzyme that catalyzes the conversion of 4,5-dihydro-4-oxo-5-imidazolepropanoate to urocanate and water. EC 4.2.1.49.
Fatty acid biopolymers that are biosynthesized by microbial polyhydroxyalkanoate synthase enzymes. They are being investigated for use as biodegradable polyesters.
Extrachromosomal, usually CIRCULAR DNA molecules that are self-replicating and transferable from one organism to another. They are found in a variety of bacterial, archaeal, fungal, algal, and plant species. They are used in GENETIC ENGINEERING as CLONING VECTORS.
An enzyme that catalyzes the oxidation of catechol to muconic acid with the use of Fe3+ as a cofactor. This enzyme was formerly characterized as EC 1.13.1.1 and EC 1.99.2.2.
Derivatives of adipic acid. Included under this heading are a broad variety of acid forms, salts, esters, and amides that contain a 1,6-carboxy terminated aliphatic structure.
A species of gram-negative bacteria in the genus PSEUDOMONAS, containing multiple genomovars. It is distinguishable from other pseudomonad species by its ability to use MALTOSE and STARCH as sole carbon and energy sources. It can degrade ENVIRONMENTAL POLLUTANTS and has been used as a model organism to study denitrification.
Viruses whose host is Pseudomonas. A frequently encountered Pseudomonas phage is BACTERIOPHAGE PHI 6.
A species of gram-negative, fluorescent, phytopathogenic bacteria in the genus PSEUDOMONAS. It is differentiated into approximately 50 pathovars with different plant pathogenicities and host specificities.
Deoxyribonucleic acid that makes up the genetic material of bacteria.
In bacteria, a group of metabolically related genes, with a common promoter, whose transcription into a single polycistronic MESSENGER RNA is under the control of an OPERATOR REGION.
Methyl, propyl, butyl, and ethyl esters of p-hydroxybenzoic acid. They have been approved by the FDA as antimicrobial agents for foods and pharmaceuticals. (From Hawley's Condensed Chemical Dictionary, 11th ed, p872)
An antiseptic and disinfectant aromatic alcohol.
A fungistatic compound that is widely used as a food preservative. It is conjugated to GLYCINE in the liver and excreted as hippuric acid.
A species of gram-negative, facultatively anaerobic, rod-shaped bacteria (GRAM-NEGATIVE FACULTATIVELY ANAEROBIC RODS) commonly found in the lower part of the intestine of warm-blooded animals. It is usually nonpathogenic, but some strains are known to produce DIARRHEA and pyogenic infections. Pathogenic strains (virotypes) are classified by their specific pathogenic mechanisms such as toxins (ENTEROTOXIGENIC ESCHERICHIA COLI), etc.
Any liquid or solid preparation made specifically for the growth, storage, or transport of microorganisms or other types of cells. The variety of media that exist allow for the culturing of specific microorganisms and cell types, such as differential media, selective media, test media, and defined media. Solid media consist of liquid media that have been solidified with an agent such as AGAR or GELATIN.
Benzoic acid or benzoic acid esters substituted with one or more chlorine atoms.
The insertion of recombinant DNA molecules from prokaryotic and/or eukaryotic sources into a replicating vehicle, such as a plasmid or virus vector, and the introduction of the resultant hybrid molecules into recipient cells without altering the viability of those cells.
The order of amino acids as they occur in a polypeptide chain. This is referred to as the primary structure of proteins. It is of fundamental importance in determining PROTEIN CONFORMATION.
The sequence of PURINES and PYRIMIDINES in nucleic acids and polynucleotides. It is also called nucleotide sequence.
Derivatives of phenylacetic acid. Included under this heading are a variety of acid forms, salts, esters, and amides that contain the benzeneacetic acid structure. Note that this class of compounds should not be confused with derivatives of phenyl acetate, which contain the PHENOL ester of ACETIC ACID.
Widely distributed enzymes that carry out oxidation-reduction reactions in which one atom of the oxygen molecule is incorporated into the organic substrate; the other oxygen atom is reduced and combined with hydrogen ions to form water. They are also known as monooxygenases or hydroxylases. These reactions require two substrates as reductants for each of the two oxygen atoms. There are different classes of monooxygenases depending on the type of hydrogen-providing cosubstrate (COENZYMES) required in the mixed-function oxidation.
A DNA-directed RNA polymerase found in BACTERIA. It is a holoenzyme that consists of multiple subunits including sigma factor 54.
The generic name for the group of aliphatic hydrocarbons Cn-H2n+2. They are denoted by the suffix -ane. (Grant & Hackh's Chemical Dictionary, 5th ed)
Any member of the class of enzymes that catalyze the cleavage of the substrate and the addition of water to the resulting molecules, e.g., ESTERASES, glycosidases (GLYCOSIDE HYDROLASES), lipases, NUCLEOTIDASES, peptidases (PEPTIDE HYDROLASES), and phosphatases (PHOSPHORIC MONOESTER HYDROLASES). EC 3.
Organic compounds containing carbon and hydrogen in the form of an unsaturated, usually hexagonal ring structure. The compounds can be single ring, or double, triple, or multiple fused rings.
'Benzene derivatives' are organic compounds that contain a benzene ring as the core structure, with various functional groups attached to it, and can have diverse chemical properties and uses, including as solvents, intermediates in chemical synthesis, and pharmaceuticals.
A colorless, toxic liquid with a strong aromatic odor. It is used to make rubbers, polymers and copolymers, and polystyrene plastics.
Chlorobenzenes are organic compounds consisting of a benzene ring substituted with one or more chlorine atoms, used as solvents, refrigerants, and intermediates in the production of other chemicals, but with limited use due to environmental and health concerns.
Discrete segments of DNA which can excise and reintegrate to another site in the genome. Most are inactive, i.e., have not been found to exist outside the integrated state. DNA transposable elements include bacterial IS (insertion sequence) elements, Tn elements, the maize controlling elements Ac and Ds, Drosophila P, gypsy, and pogo elements, the human Tigger elements and the Tc and mariner elements which are found throughout the animal kingdom.
A class of enzymes that catalyze geometric or structural changes within a molecule to form a single product. The reactions do not involve a net change in the concentrations of compounds other than the substrate and the product.(from Dorland, 28th ed) EC 5.
A soluble cytochrome P-450 enzyme that catalyzes camphor monooxygenation in the presence of putidaredoxin, putidaredoxin reductase, and molecular oxygen. This enzyme, encoded by the CAMC gene also known as CYP101, has been crystallized from bacteria and the structure is well defined. Under anaerobic conditions, this enzyme reduces the polyhalogenated compounds bound at the camphor-binding site.
Derivatives of SUCCINIC ACID. Included under this heading are a broad variety of acid forms, salts, esters, and amides that contain a 1,4-carboxy terminated aliphatic structure.
The presence of bacteria, viruses, and fungi in the soil. This term is not restricted to pathogenic organisms.
Analogs or derivatives of mandelic acid (alpha-hydroxybenzeneacetic acid).
Any detectable and heritable change in the genetic material that causes a change in the GENOTYPE and which is transmitted to daughter cells and to succeeding generations.
An enzyme that catalyzes the oxidation of protocatechuate to 3-carboxy-cis-cis-muconate in the presence of molecular oxygen. It contains ferric ion. EC 1.13.11.3.
A parasexual process in BACTERIA; ALGAE; FUNGI; and ciliate EUKARYOTA for achieving exchange of chromosome material during fusion of two cells. In bacteria, this is a uni-directional transfer of genetic material; in protozoa it is a bi-directional exchange. In algae and fungi, it is a form of sexual reproduction, with the union of male and female gametes.
A multistage process that includes cloning, physical mapping, subcloning, determination of the DNA SEQUENCE, and information analysis.
The class of all enzymes catalyzing oxidoreduction reactions. The substrate that is oxidized is regarded as a hydrogen donor. The systematic name is based on donor:acceptor oxidoreductase. The recommended name will be dehydrogenase, wherever this is possible; as an alternative, reductase can be used. Oxidase is only used in cases where O2 is the acceptor. (Enzyme Nomenclature, 1992, p9)
Eight-carbon saturated hydrocarbon group of the methane series. Include isomers and derivatives.
A characteristic feature of enzyme activity in relation to the kind of substrate on which the enzyme or catalytic molecule reacts.
Oxidoreductases that are specific for ALDEHYDES.
Encrustations, formed from microbes (bacteria, algae, fungi, plankton, or protozoa) embedding in extracellular polymers, that adhere to surfaces such as teeth (DENTAL DEPOSITS); PROSTHESES AND IMPLANTS; and catheters. Biofilms are prevented from forming by treating surfaces with DENTIFRICES; DISINFECTANTS; ANTI-INFECTIVE AGENTS; and antifouling agents.
Two-ring crystalline hydrocarbons isolated from coal tar. They are used as intermediates in chemical synthesis, as insect repellents, fungicides, lubricants, preservatives, and, formerly, as topical antiseptics.
Gluconates are salts or esters of gluconic acid, primarily used in medical treatments as a source of the essential nutrient, calcium, and as a chelating agent to bind and remove toxic metals such as aluminum and iron from the body.
Mutagenesis where the mutation is caused by the introduction of foreign DNA sequences into a gene or extragenic sequence. This may occur spontaneously in vivo or be experimentally induced in vivo or in vitro. Proviral DNA insertions into or adjacent to a cellular proto-oncogene can interrupt GENETIC TRANSLATION of the coding sequences or interfere with recognition of regulatory elements and cause unregulated expression of the proto-oncogene resulting in tumor formation.
A subclass of enzymes which includes all dehydrogenases acting on primary and secondary alcohols as well as hemiacetals. They are further classified according to the acceptor which can be NAD+ or NADP+ (subclass 1.1.1), cytochrome (1.1.2), oxygen (1.1.3), quinone (1.1.5), or another acceptor (1.1.99).
Use of restriction endonucleases to analyze and generate a physical map of genomes, genes, or other segments of DNA.
A colorless liquid with a sharp burning taste and slight odor. It is used as a local anesthetic and to reduce pain associated with LIDOCAINE injection. Also, it is used in the manufacture of other benzyl compounds, as a pharmaceutic aid, and in perfumery and flavoring.
Substances that reduce the growth or reproduction of BACTERIA.
Cresols, also known as hydroxytoluene, are a group of phenolic compounds including ortho-cresol, meta-cresol, and para-cresol, which differ in the position of the hydroxyl group on the benzene ring.
Alcohols derived from the aryl radical (C6H5CH2-) and defined by C6H5CHOH. The concept includes derivatives with any substituents on the benzene ring.
A chemical reaction in which an electron is transferred from one molecule to another. The electron-donating molecule is the reducing agent or reductant; the electron-accepting molecule is the oxidizing agent or oxidant. Reducing and oxidizing agents function as conjugate reductant-oxidant pairs or redox pairs (Lehninger, Principles of Biochemistry, 1982, p471).
Enzymes that catalyze the transposition of double bond(s) in a steroid molecule. EC 5.3.3.
The rate dynamics in chemical or physical systems.
Benzoate derivatives substituted by one or more hydroxy groups in any position on the benzene ring.
Low-molecular-weight compounds produced by microorganisms that aid in the transport and sequestration of ferric iron. (The Encyclopedia of Molecular Biology, 1994)
A 2,4,6-trinitrotoluene, which is an explosive chemical that can cause skin irritation and other toxic consequences.
A test used to determine whether or not complementation (compensation in the form of dominance) will occur in a cell with a given mutant phenotype when another mutant genome, encoding the same mutant phenotype, is introduced into that cell.
Enzymes that transfer the ADP-RIBOSE group of NAD or NADP to proteins or other small molecules. Transfer of ADP-ribose to water (i.e., hydrolysis) is catalyzed by the NADASES. The mono(ADP-ribose)transferases transfer a single ADP-ribose. POLY(ADP-RIBOSE) POLYMERASES transfer multiple units of ADP-ribose to protein targets, building POLY ADENOSINE DIPHOSPHATE RIBOSE in linear or branched chains.
A protein which is a subunit of RNA polymerase. It effects initiation of specific RNA chains from DNA.
A nonmetallic element with atomic symbol C, atomic number 6, and atomic weight [12.0096; 12.0116]. It may occur as several different allotropes including DIAMOND; CHARCOAL; and GRAPHITE; and as SOOT from incompletely burned fuel.
DNA sequences which are recognized (directly or indirectly) and bound by a DNA-dependent RNA polymerase during the initiation of transcription. Highly conserved sequences within the promoter include the Pribnow box in bacteria and the TATA BOX in eukaryotes.
Enzymes that catalyze the addition of a carboxyl group to a compound (carboxylases) or the removal of a carboxyl group from a compound (decarboxylases). EC 4.1.1.
The salts or esters of salicylic acids, or salicylate esters of an organic acid. Some of these have analgesic, antipyretic, and anti-inflammatory activities by inhibiting prostaglandin synthesis.
An increase in the rate of synthesis of an enzyme due to the presence of an inducer which acts to derepress the gene responsible for enzyme synthesis.
Bacteria which lose crystal violet stain but are stained pink when treated by Gram's method.
Enzymes that catalyze the breakage of a carbon-oxygen bond leading to unsaturated products via the removal of water. EC 4.2.1.
One of the three domains of life (the others being Eukarya and ARCHAEA), also called Eubacteria. They are unicellular prokaryotic microorganisms which generally possess rigid cell walls, multiply by cell division, and exhibit three principal forms: round or coccal, rodlike or bacillary, and spiral or spirochetal. Bacteria can be classified by their response to OXYGEN: aerobic, anaerobic, or facultatively anaerobic; by the mode by which they obtain their energy: chemotrophy (via chemical reaction) or PHOTOTROPHY (via light reaction); for chemotrophs by their source of chemical energy: CHEMOLITHOTROPHY (from inorganic compounds) or chemoorganotrophy (from organic compounds); and by their source for CARBON; NITROGEN; etc.; HETEROTROPHY (from organic sources) or AUTOTROPHY (from CARBON DIOXIDE). They can also be classified by whether or not they stain (based on the structure of their CELL WALLS) with CRYSTAL VIOLET dye: gram-negative or gram-positive.
Homogentisic acid is an organic compound that is an intermediate metabolite in the catabolic pathway of tyrosine and phenylalanine, and its accumulation in the body can lead to a rare genetic disorder known as alkaptonuria.
The degree of similarity between sequences of amino acids. This information is useful for the analyzing genetic relatedness of proteins and species.
Benzene derivatives that include one or more hydroxyl groups attached to the ring structure.
Any tests that demonstrate the relative efficacy of different chemotherapeutic agents against specific microorganisms (i.e., bacteria, fungi, viruses).
Structures within the nucleus of bacterial cells consisting of or containing DNA, which carry genetic information essential to the cell.
A water-soluble, colorless crystal with an acid taste that is used as a chemical intermediate, in medicine, the manufacture of lacquers, and to make perfume esters. It is also used in foods as a sequestrant, buffer, and a neutralizing agent. (Hawley's Condensed Chemical Dictionary, 12th ed, p1099; McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed, p1851)
The phenomenon whereby compounds whose molecules have the same number and kind of atoms and the same atomic arrangement, but differ in their spatial relationships. (From McGraw-Hill Dictionary of Scientific and Technical Terms, 5th ed)
A set of genes descended by duplication and variation from some ancestral gene. Such genes may be clustered together on the same chromosome or dispersed on different chromosomes. Examples of multigene families include those that encode the hemoglobins, immunoglobulins, histocompatibility antigens, actins, tubulins, keratins, collagens, heat shock proteins, salivary glue proteins, chorion proteins, cuticle proteins, yolk proteins, and phaseolins, as well as histones, ribosomal RNA, and transfer RNA genes. The latter three are examples of reiterated genes, where hundreds of identical genes are present in a tandem array. (King & Stanfield, A Dictionary of Genetics, 4th ed)
The study, utilization, and manipulation of those microorganisms capable of economically producing desirable substances or changes in substances, and the control of undesirable microorganisms.
Drug metabolizing enzymes which oxidize methyl ethers. Usually found in liver microsomes.
One of the FURANS with a carbonyl thereby forming a cyclic lactone. It is an endogenous compound made from gamma-aminobutyrate and is the precursor of gamma-hydroxybutyrate. It is also used as a pharmacological agent and solvent.
The restriction of a characteristic behavior, anatomical structure or physical system, such as immune response; metabolic response, or gene or gene variant to the members of one species. It refers to that property which differentiates one species from another but it is also used for phylogenetic levels higher or lower than the species.
Iron-containing proteins that transfer electrons, usually at a low potential, to flavoproteins; the iron is not present as in heme. (McGraw-Hill Dictionary of Scientific and Technical Terms, 5th ed)
An autosomal recessive genetic disease of the EXOCRINE GLANDS. It is caused by mutations in the gene encoding the CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR expressed in several organs including the LUNG, the PANCREAS, the BILIARY SYSTEM, and the SWEAT GLANDS. Cystic fibrosis is characterized by epithelial secretory dysfunction associated with ductal obstruction resulting in AIRWAY OBSTRUCTION; chronic RESPIRATORY INFECTIONS; PANCREATIC INSUFFICIENCY; maldigestion; salt depletion; and HEAT PROSTRATION.
Directed modification of the gene complement of a living organism by such techniques as altering the DNA, substituting genetic material by means of a virus, transplanting whole nuclei, transplanting cell hybrids, etc.
Genes which regulate or circumscribe the activity of other genes; specifically, genes which code for PROTEINS or RNAs which have GENE EXPRESSION REGULATION functions.
The sum of the weight of all the atoms in a molecule.
A highly volatile inhalation anesthetic used mainly in short surgical procedures where light anesthesia with good analgesia is required. It is also used as an industrial solvent. Prolonged exposure to high concentrations of the vapor can lead to cardiotoxicity and neurological impairment.
A phenomenon where microorganisms communicate and coordinate their behavior by the accumulation of signaling molecules. A reaction occurs when a substance accumulates to a sufficient concentration. This is most commonly seen in bacteria.
Salts of alginic acid that are extracted from marine kelp and used to make dental impressions and as absorbent material for surgical dressings.
Substances which pollute the soil. Use for soil pollutants in general or for which there is no specific heading.
Mold and yeast inhibitor. Used as a fungistatic agent for foods, especially cheeses.
Oxidoreductases that are specific for KETONES.
Antibiotic pigment produced by Pseudomonas aeruginosa.
The arrangement of two or more amino acid or base sequences from an organism or organisms in such a way as to align areas of the sequences sharing common properties. The degree of relatedness or homology between the sequences is predicted computationally or statistically based on weights assigned to the elements aligned between the sequences. This in turn can serve as a potential indicator of the genetic relatedness between the organisms.
An enzyme that catalyzes the first step of histidine catabolism, forming UROCANIC ACID and AMMONIA from HISTIDINE. Deficiency of this enzyme is associated with elevated levels of serum histidine and is called histidinemia (AMINO ACID METABOLISM, INBORN ERRORS).
Toluidines are a group of organic compounds consisting of various derivatives of toluene with an amine group (-NH2) attached to the benzene ring, which have been used in chemical synthesis and historical medical research but are not currently utilized as therapeutic agents due to their carcinogenic properties.
Nitrosoguanidines are organic compounds containing a nitroso group (-NO) and a guanidine group (-R1R2N-CN-), known for their alkylating properties and potential use as therapeutic agents or carcinogenic substances, depending on the specific compound and context.
Toxins produced, especially by bacterial or fungal cells, and released into the culture medium or environment.
Enzymes of the isomerase class that catalyze reactions in which a group can be regarded as eliminated from one part of a molecule, leaving a double bond, while remaining covalently attached to the molecule. (From Enzyme Nomenclature, 1992) EC 5.5.
A genus of gram-negative bacteria of the family MORAXELLACEAE, found in soil and water and of uncertain pathogenicity.
Proteins isolated from the outer membrane of Gram-negative bacteria.
The ability of microorganisms, especially bacteria, to resist or to become tolerant to chemotherapeutic agents, antimicrobial agents, or antibiotics. This resistance may be acquired through gene mutation or foreign DNA in transmissible plasmids (R FACTORS).
The chemical alteration of an exogenous substance by or in a biological system. The alteration may inactivate the compound or it may result in the production of an active metabolite of an inactive parent compound. The alterations may be divided into METABOLIC DETOXICATION, PHASE I and METABOLIC DETOXICATION, PHASE II.
A fractionated cell extract that maintains a biological function. A subcellular fraction isolated by ultracentrifugation or other separation techniques must first be isolated so that a process can be studied free from all of the complex side reactions that occur in a cell. The cell-free system is therefore widely used in cell biology. (From Alberts et al., Molecular Biology of the Cell, 2d ed, p166)
A P450 oxidoreductase that catalyzes the hydroxylation of the terminal carbon of linear hydrocarbons such as octane and FATTY ACIDS in the omega position. The enzyme may also play a role in the oxidation of a variety of structurally unrelated compounds such as XENOBIOTICS, and STEROIDS.
The usually underground portions of a plant that serve as support, store food, and through which water and mineral nutrients enter the plant. (From American Heritage Dictionary, 1982; Concise Dictionary of Biology, 1990)
Diseases of plants.
Enzymes that catalyze the cleavage of a carbon-sulfur bond by means other than hydrolysis or oxidation. EC 4.4.
The genetic complement of a BACTERIA as represented in its DNA.
The normality of a solution with respect to HYDROGEN ions; H+. It is related to acidity measurements in most cases by pH = log 1/2[1/(H+)], where (H+) is the hydrogen ion concentration in gram equivalents per liter of solution. (McGraw-Hill Dictionary of Scientific and Technical Terms, 6th ed)
Liquids that dissolve other substances (solutes), generally solids, without any change in chemical composition, as, water containing sugar. (Grant & Hackh's Chemical Dictionary, 5th ed)
A species of gram-negative bacteria in the genus PSEUDOMONAS, which is found in SOIL and WATER.
A sugar acid formed by the oxidation of the C-6 carbon of GLUCOSE. In addition to being a key intermediate metabolite of the uronic acid pathway, glucuronic acid also plays a role in the detoxification of certain drugs and toxins by conjugating with them to form GLUCURONIDES.
Organic esters or salts of sulfonic acid derivatives containing an aliphatic hydrocarbon radical.
Body of knowledge related to the use of organisms, cells or cell-derived constituents for the purpose of developing products which are technically, scientifically and clinically useful. Alteration of biologic function at the molecular level (i.e., GENETIC ENGINEERING) is a central focus; laboratory methods used include TRANSFECTION and CLONING technologies, sequence and structure analysis algorithms, computer databases, and gene and protein structure function analysis and prediction.
The art or process of comparing photometrically the relative intensities of the light in different parts of the spectrum.
Steroid derivatives formed by oxidation of a methyl group on the side chain or a methylene group in the ring skeleton to form a ketone.
Vertical transmission of hereditary characters by DNA from cytoplasmic organelles such as MITOCHONDRIA; CHLOROPLASTS; and PLASTIDS, or from PLASMIDS or viral episomal DNA.
Enumeration by direct count of viable, isolated bacterial, archaeal, or fungal CELLS or SPORES capable of growth on solid CULTURE MEDIA. The method is used routinely by environmental microbiologists for quantifying organisms in AIR; FOOD; and WATER; by clinicians for measuring patients' microbial load; and in antimicrobial drug testing.
The biosynthesis of RNA carried out on a template of DNA. The biosynthesis of DNA from an RNA template is called REVERSE TRANSCRIPTION.
A flavoring agent. It is the intermediate product in the two-step bioconversion of ferulic acid to vanillin. (J Biotechnol 1996;50(2-3):107-13).
Benzaldehydes are aromatic organic compounds consisting of a benzene ring connected to a formyl group (-CHO), which is the simplest and most representative compound being benzaldehyde (C6H5CHO).
The presence of bacteria, viruses, and fungi in water. This term is not restricted to pathogenic organisms.
An estrogenic steroid produced by HORSES. It has a total of five double bonds in the A- and B-ring. High concentration of equilenin is found in the URINE of pregnant mares.
Organic compounds containing the carboxy group (-COOH). This group of compounds includes amino acids and fatty acids. Carboxylic acids can be saturated, unsaturated, or aromatic.
Those components of an organism that determine its capacity to cause disease but are not required for its viability per se. Two classes have been characterized: TOXINS, BIOLOGICAL and surface adhesion molecules that effect the ability of the microorganism to invade and colonize a host. (From Davis et al., Microbiology, 4th ed. p486)
Polymers of organic acids and alcohols, with ester linkages--usually polyethylene terephthalate; can be cured into hard plastic, films or tapes, or fibers which can be woven into fabrics, meshes or velours.
The property of objects that determines the direction of heat flow when they are placed in direct thermal contact. The temperature is the energy of microscopic motions (vibrational and translational) of the particles of atoms.
Isomeric forms and derivatives of octanol (C8H17OH).
Ureohydrolases are a class of enzymes that catalyze the hydrolysis of urea into ammonia and carbon dioxide, which can include urease, urease accessory proteins, and other enzymes with similar functions.

The PalkBFGHJKL promoter is under carbon catabolite repression control in Pseudomonas oleovorans but not in Escherichia coli alk+ recombinants. (1/1206)

The alk genes are located on the OCT plasmid of Pseudomonas oleovorans and encode an inducible pathway for the utilization of n-alkanes as carbon and energy sources. We have investigated the influence of alternative carbon sources on the induction of this pathway in P. oleovorans and Escherichia coli alk+ recombinants. In doing so, we confirmed earlier reports that induction of alkane hydroxylase activity in pseudomonads is subject to carbon catabolite repression. Specifically, synthesis of the monooxygenase component AlkB is repressed at the transcriptional level. The alk genes have been cloned into plasmid pGEc47, which has a copy number of about 5 to 10 per cell in both E. coli and pseudomonads. Pseudomonas putida GPo12 is a P. oleovorans derivative cured of the OCT plasmid. Upon introduction of pGEc47 in this strain, carbon catabolite repression of alkane hydroxylase activity was reduced significantly. In cultures of recombinant E. coli HB101 and W3110 carrying pGEc47, induction of AlkB and transcription of the alkB gene were no longer subject to carbon catabolite repression. This suggests that carbon catabolite repression of alkane degradation is regulated differently in Pseudomonas and in E. coli strains. These results also indicate that PalkBFGHJKL, the Palk promoter, might be useful in attaining high expression levels of heterologous genes in E. coli grown on inexpensive carbon sources which normally trigger carbon catabolite repression of native expression systems in this host.  (+info)

Purification and characterization of gentisate 1,2-dioxygenases from Pseudomonas alcaligenes NCIB 9867 and Pseudomonas putida NCIB 9869. (2/1206)

Two 3-hydroxybenzoate-inducible gentisate 1,2-dioxygenases were purified to homogeneity from Pseudomonas alcaligenes NCIB 9867 (P25X) and Pseudomonas putida NCIB 9869 (P35X), respectively. The estimated molecular mass of the purified P25X gentisate 1, 2-dioxygenase was 154 kDa, with a subunit mass of 39 kDa. Its structure is deduced to be a tetramer. The pI of this enzyme was established to be 4.8 to 5.0. The subunit mass of P35X gentisate 1, 2-dioxygenase was 41 kDa, and this enzyme was deduced to exist as a dimer, with a native molecular mass of about 82 kDa. The pI of P35X gentisate 1,2-dioxygenase was around 4.6 to 4.8. Both of the gentisate 1,2-dioxygenases exhibited typical saturation kinetics and had apparent Kms of 92 and 143 microM for gentisate, respectively. Broad substrate specificities were exhibited towards alkyl and halogenated gentisate analogs. Both enzymes had similar kinetic turnover characteristics for gentisate, with kcat/Km values of 44.08 x 10(4) s-1 M-1 for the P25X enzyme and 39.34 x 10(4) s-1 M-1 for the P35X enzyme. Higher kcat/Km values were expressed by both enzymes against the substituted gentisates. Significant differences were observed between the N-terminal sequences of the first 23 amino acid residues of the P25X and P35X gentisate 1,2-dioxygenases. The P25X gentisate 1,2-dioxygenase was stable between pH 5.0 and 7.5, with the optimal pH around 8.0. The P35X enzyme showed a pH stability range between 7.0 and 9.0, and the optimum pH was also 8.0. The optimal temperature for both P25X and P35X gentisate 1, 2-dioxygenases was around 50 degrees C, but the P35X enzyme was more heat stable than that from P25X. Both enzymes were strongly stimulated by 0.1 mM Fe2+ but were completely inhibited by the presence of 5 mM Cu2+. Partial inhibition of both enzymes was also observed with 5 mM Mn2+, Zn2+, and EDTA.  (+info)

Degradation of chloronitrobenzenes by a coculture of Pseudomonas putida and a Rhodococcus sp. (3/1206)

A single microorganism able to mineralize chloronitrobenzenes (CNBs) has not been reported, and degradation of CNBs by coculture of two microbial strains was attempted. Pseudomonas putida HS12 was first isolated by analogue enrichment culture using nitrobenzene (NB) as the substrate, and this strain was observed to possess a partial reductive pathway for the degradation of NB. From high-performance liquid chromatography-mass spectrometry and 1H nuclear magnetic resonance analyses, NB-grown cells of P. putida HS12 were found to convert 3- and 4-CNBs to the corresponding 5- and 4-chloro-2-hydroxyacetanilides, respectively, by partial reduction and subsequent acetylation. For the degradation of CNBs, Rhodococcus sp. strain HS51, which degrades 4- and 5-chloro-2-hydroxyacetanilides, was isolated and combined with P. putida HS12 to give a coculture. This coculture was confirmed to mineralize 3- and 4-CNBs in the presence of an additional carbon source. A degradation pathway for 3- and 4-CNBs by the two isolated strains was also proposed.  (+info)

Role of the alternative sigma factor sigmaS in expression of the AlkS regulator of the Pseudomonas oleovorans alkane degradation pathway. (4/1206)

The AlkS protein activates transcription from the PalkB promoter, allowing the expression of a number of genes required for the assimilation of alkanes in Pseudomonas oleovorans. We have identified the promoter from which the alkS gene is transcribed, PalkS, and analyzed its expression under different conditions and genetic backgrounds. Transcription from PalkS was very low during the exponential phase of growth and increased considerably when cells reached the stationary phase. The PalkS -10 region was similar to the consensus described for promoters recognized by Escherichia coli RNA polymerase bound to the alternative sigma factor sigmaS, which directs the expression of many stationary-phase genes. Reporter strains containing PalkS-lacZ transcriptional fusions showed that PalkS promoter is very weakly expressed in a Pseudomonas putida strain bearing an inactivated allele of the gene coding for sigmaS, rpoS. When PalkS was transferred to E. coli, transcription started at the same site and expression was higher in stationary phase only if sigmaS-RNA polymerase was present. The low levels of AlkS protein generated in the absence of sigmaS were enough to support a partial induction of the PalkB promoter. The -10 and -35 regions of PalkS promoter also show some similarity to the consensus recognized by sigmaD-RNA polymerase, the primary form of RNA polymerase. We propose that in exponential phase PalkS is probably recognized both by sigmaD-RNA polymerase (inefficiently) and by sigmaS-RNA polymerase (present at low levels), leading to low-level expression of the alkS gene. sigmaS-RNA polymerase would be responsible for the high level of activity of PalkS observed in stationary phase.  (+info)

Reduction of cell lysate viscosity during processing of poly(3-hydroxyalkanoates) by chromosomal integration of the staphylococcal nuclease gene in Pseudomonas putida. (5/1206)

Poly(3-hydroxyalkanoates) (PHAs) are biodegradable thermoplastics which are accumulated by many bacterial species in the form of intracellular granules and which are thought to serve as reserves of carbon and energy. Pseudomonas putida accumulates a polyester, composed of medium-side-chain 3-hydroxyalkanoic acids, which has excellent film-forming properties. Industrial processing of PHA involves purification of the PHA granules from high-cell-density cultures. After the fermentation process, cells are lysed by homogenization and PHA granules are purified by chemical treatment and repeated washings to yield a PHA latex. Unfortunately, the liberation of chromosomal DNA during lysis causes a dramatic increase in viscosity, which is problematic in the subsequent purification steps. Reduction of the viscosity is generally achieved by the supplementation of commercially available nuclease preparations or by heat treatment; however, both procedures add substantial costs to the process. As a solution to this problem, a nuclease-encoding gene from Staphylococcus aureus was integrated into the genomes of several PHA producers. Staphylococcal nuclease is readily expressed in PHA-producing Pseudomonas strains and is directed to the periplasm, and occasionally to the culture medium, without affecting PHA production or strain stability. During downstream processing, the viscosity of the lysate from a nuclease-integrated Pseudomonas strain was reduced to a level similar to that observed for the wild-type strain after treatment with commercial nuclease. The nuclease gene was also functionally integrated into the chromosomes of other PHA producers, including Ralstonia eutropha.  (+info)

Phenotypic expression of PCR-generated random mutations in a Pseudomonas putida gene after its introduction into an Acinetobacter chromosome by natural transformation. (6/1206)

Localized sets of random point mutations generated by PCR amplification can be transferred efficiently to the chromosome of Acinetobacter ADP1 (also known as strain BD413) by natural transformation. The technique does not require cloning of PCR fragments in plasmids: PCR-amplified DNA fragments are internalized by cells and directly incorporated into their genomes by homologous recombination. Previously such procedures for random mutagenesis could be applied only to Acinetobacter genes affording the selection of mutant phenotypes. Here we describe the construction of a vector and recipient that allow for mutagenesis, recovery, and expression of heterologous genes that may lack a positive selection. The plasmid carries an Acinetobacter chromosomal segment interrupted by a multiple cloning site next to a kanamycin resistance marker. The insertion of heterologous DNA into the multiple cloning site prepares the insert as a target for PCR mutagenesis. PCR amplifies the kanamycin resistance marker and a flanking region of Acinetobacter DNA along with the insert of heterologous DNA. Nucleotide sequence identity between the flanking regions and corresponding chromosomal segments in an engineered Acinetobacter recipient allows homologous recombination of the PCR-amplified DNA fragments into a specific chromosomal docking site from which they can be expressed. The recipient strain contains only a portion of the kanamycin resistance gene, so donor DNA containing both this gene and the mutagenized insert can be selected by demanding growth of recombinants in the presence of kanamycin. The effectiveness of the technique was demonstrated with the relatively GC-rich Pseudomonas putida xylE gene. After only one round of PCR amplification (35 cycles), donor DNA produced transformants of which up to 30% carried a defective xylE gene after growth at 37 degrees C. Of recombinant clones that failed to express xylE at 37 degrees C, about 10% expressed the gene when grown at 22 degrees C. The techniques described here could be adapted to prepare colonies with an altered function in any gene for which either a selection or a suitable phenotypic screen exists.  (+info)

cumA, a gene encoding a multicopper oxidase, is involved in Mn2+ oxidation in Pseudomonas putida GB-1. (7/1206)

Pseudomonas putida GB-1-002 catalyzes the oxidation of Mn2+. Nucleotide sequence analysis of the transposon insertion site of a nonoxidizing mutant revealed a gene (designated cumA) encoding a protein homologous to multicopper oxidases. Addition of Cu2+ increased the Mn2+-oxidizing activity of the P. putida wild type by a factor of approximately 5. The growth rates of the wild type and the mutant were not affected by added Cu2+. A second open reading frame (designated cumB) is located downstream from cumA. Both cumA and cumB probably are part of a single operon. The translation product of cumB was homologous (level of identity, 45%) to that of orf74 of Bradyrhizobium japonicum. A mutation in orf74 resulted in an extended lag phase and lower cell densities. Similar growth-related observations were made for the cumA mutant, suggesting that the cumA mutation may have a polar effect on cumB. This was confirmed by site-specific gene replacement in cumB. The cumB mutation did not affect the Mn2+-oxidizing ability of the organism but resulted in decreased growth. In summary, our data indicate that the multicopper oxidase CumA is involved in the oxidation of Mn2+ and that CumB is required for optimal growth of P. putida GB-1-002.  (+info)

Homogenization and crystallization of histidine ammonia-lyase by exchange of a surface cysteine residue. (8/1206)

Histidase (histidine ammonia-lyase, EC 4.3.1.3) from Pseudomonas putida was expressed in Escherichia coli and purified. In the absence of thiols the tetrameric enzyme gave rise to undefined aggregates and suitable crystals could not be obtained. The solvent accessibility along the chain was predicted from the amino acid sequence. Among the seven cysteines, only one was labeled as 'solvent-exposed'. The exchange of this cysteine to alanine abolished all undefined aggregations and yielded readily crystals diffracting to 1.8 A resolution.  (+info)

"Pseudomonas putida" is a species of gram-negative, rod-shaped bacteria that is commonly found in soil and water environments. It is a non-pathogenic, opportunistic microorganism that is known for its versatile metabolism and ability to degrade various organic compounds. This bacterium has been widely studied for its potential applications in bioremediation and industrial biotechnology due to its ability to break down pollutants such as toluene, xylene, and other aromatic hydrocarbons. It is also known for its resistance to heavy metals and antibiotics, making it a valuable tool in the study of bacterial survival mechanisms and potential applications in bioremediation and waste treatment.

"Pseudomonas" is a genus of Gram-negative, rod-shaped bacteria that are widely found in soil, water, and plants. Some species of Pseudomonas can cause disease in animals and humans, with P. aeruginosa being the most clinically relevant as it's an opportunistic pathogen capable of causing various types of infections, particularly in individuals with weakened immune systems.

P. aeruginosa is known for its remarkable ability to resist many antibiotics and disinfectants, making infections caused by this bacterium difficult to treat. It can cause a range of healthcare-associated infections, such as pneumonia, bloodstream infections, urinary tract infections, and surgical site infections. In addition, it can also cause external ear infections and eye infections.

Prompt identification and appropriate antimicrobial therapy are crucial for managing Pseudomonas infections, although the increasing antibiotic resistance poses a significant challenge in treatment.

"Pseudomonas aeruginosa" is a medically important, gram-negative, rod-shaped bacterium that is widely found in the environment, such as in soil, water, and on plants. It's an opportunistic pathogen, meaning it usually doesn't cause infection in healthy individuals but can cause severe and sometimes life-threatening infections in people with weakened immune systems, burns, or chronic lung diseases like cystic fibrosis.

P. aeruginosa is known for its remarkable ability to resist many antibiotics and disinfectants due to its intrinsic resistance mechanisms and the acquisition of additional resistance determinants. It can cause various types of infections, including respiratory tract infections, urinary tract infections, gastrointestinal infections, dermatitis, and severe bloodstream infections known as sepsis.

The bacterium produces a variety of virulence factors that contribute to its pathogenicity, such as exotoxins, proteases, and pigments like pyocyanin and pyoverdine, which aid in iron acquisition and help the organism evade host immune responses. Effective infection control measures, appropriate use of antibiotics, and close monitoring of high-risk patients are crucial for managing P. aeruginosa infections.

Pseudomonas infections are infections caused by the bacterium Pseudomonas aeruginosa or other species of the Pseudomonas genus. These bacteria are gram-negative, opportunistic pathogens that can cause various types of infections, including respiratory, urinary tract, gastrointestinal, dermatological, and bloodstream infections.

Pseudomonas aeruginosa is a common cause of healthcare-associated infections, particularly in patients with weakened immune systems, chronic lung diseases, or those who are hospitalized for extended periods. The bacteria can also infect wounds, burns, and medical devices such as catheters and ventilators.

Pseudomonas infections can be difficult to treat due to the bacteria's resistance to many antibiotics. Treatment typically involves the use of multiple antibiotics that are effective against Pseudomonas aeruginosa. In severe cases, intravenous antibiotics or even hospitalization may be necessary.

Prevention measures include good hand hygiene, contact precautions for patients with known Pseudomonas infections, and proper cleaning and maintenance of medical equipment.

Toluene is not a medical condition or disease, but it is a chemical compound that is widely used in various industrial and commercial applications. Medically, toluene can be relevant as a substance of abuse due to its intoxicating effects when inhaled or sniffed. It is a colorless liquid with a distinctive sweet aroma, and it is a common solvent found in many products such as paint thinners, adhesives, and rubber cement.

In the context of medical toxicology, toluene exposure can lead to various health issues, including neurological damage, cognitive impairment, memory loss, nausea, vomiting, and hearing and vision problems. Chronic exposure to toluene can also cause significant harm to the developing fetus during pregnancy, leading to developmental delays, behavioral problems, and physical abnormalities.

"Pseudomonas fluorescens" is a gram-negative, rod-shaped bacterium found in various environments such as soil, water, and some plants. It is a non-pathogenic species of the Pseudomonas genus, which means it does not typically cause disease in humans. The name "fluorescens" comes from its ability to produce a yellow-green pigment that fluoresces under ultraviolet light. This bacterium is known for its versatility and adaptability, as well as its ability to break down various organic compounds, making it useful in bioremediation and other industrial applications.

Oxygenases are a class of enzymes that catalyze the incorporation of molecular oxygen (O2) into their substrates. They play crucial roles in various biological processes, including the biosynthesis of many natural products, as well as the detoxification and degradation of xenobiotics (foreign substances).

There are two main types of oxygenases: monooxygenases and dioxygenases. Monooxygenases introduce one atom of molecular oxygen into a substrate while reducing the other to water. An example of this type of enzyme is cytochrome P450, which is involved in drug metabolism and steroid hormone synthesis. Dioxygenases, on the other hand, incorporate both atoms of molecular oxygen into their substrates, often leading to the formation of new carbon-carbon bonds or the cleavage of existing ones.

It's important to note that while oxygenases are essential for many life-sustaining processes, they can also contribute to the production of harmful reactive oxygen species (ROS) during normal cellular metabolism. An imbalance in ROS levels can lead to oxidative stress and damage to cells and tissues, which has been linked to various diseases such as cancer, neurodegeneration, and cardiovascular disease.

Xylenes are aromatic hydrocarbons that are often used as solvents in the industrial field. They are composed of two benzene rings with methyl side groups (-CH3) and can be found as a mixture of isomers: ortho-xylene, meta-xylene, and para-xylene.

In a medical context, xylenes may be relevant due to their potential for exposure in occupational settings or through environmental contamination. Short-term exposure to high levels of xylenes can cause irritation of the eyes, nose, throat, and lungs, as well as symptoms such as headache, dizziness, and nausea. Long-term exposure has been linked to neurological effects, including memory impairment, hearing loss, and changes in behavior and mood.

It is worth noting that xylenes are not typically considered a direct medical diagnosis, but rather a potential exposure hazard or environmental contaminant that may have health impacts.

Catechol 2,3-dioxygenase is an enzyme that catalyzes the conversion of catechols to muconic acids as part of the meta-cleavage pathway in the breakdown of aromatic compounds. This enzyme plays a crucial role in the degradation of various aromatic hydrocarbons, including lignin and environmental pollutants such as polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs). Catechol 2,3-dioxygenase requires Fe(II) as a cofactor for its activity. The gene that encodes this enzyme is often used as a bioremediation marker to monitor the degradation of aromatic pollutants in the environment.

Environmental biodegradation is the breakdown of materials, especially man-made substances such as plastics and industrial chemicals, by microorganisms such as bacteria and fungi in order to use them as a source of energy or nutrients. This process occurs naturally in the environment and helps to break down organic matter into simpler compounds that can be more easily absorbed and assimilated by living organisms.

Biodegradation in the environment is influenced by various factors, including the chemical composition of the substance being degraded, the environmental conditions (such as temperature, moisture, and pH), and the type and abundance of microorganisms present. Some substances are more easily biodegraded than others, and some may even be resistant to biodegradation altogether.

Biodegradation is an important process for maintaining the health and balance of ecosystems, as it helps to prevent the accumulation of harmful substances in the environment. However, some man-made substances, such as certain types of plastics and industrial chemicals, may persist in the environment for long periods of time due to their resistance to biodegradation, leading to negative impacts on wildlife and ecosystems.

In recent years, there has been increasing interest in developing biodegradable materials that can break down more easily in the environment as a way to reduce waste and minimize environmental harm. These efforts have led to the development of various biodegradable plastics, coatings, and other materials that are designed to degrade under specific environmental conditions.

Dioxygenases are a class of enzymes that catalyze the incorporation of both atoms of molecular oxygen (O2) into their substrates. They are classified based on the type of reaction they catalyze and the number of iron atoms in their active site. The two main types of dioxygenases are:

1. Intradiol dioxygenases: These enzymes cleave an aromatic ring by inserting both atoms of O2 into a single bond between two carbon atoms, leading to the formation of an unsaturated diol (catechol) intermediate and the release of CO2. They contain a non-heme iron(III) center in their active site.

An example of intradiol dioxygenase is catechol 1,2-dioxygenase, which catalyzes the conversion of catechol to muconic acid.

2. Extradiol dioxygenases: These enzymes cleave an aromatic ring by inserting one atom of O2 at a position adjacent to the hydroxyl group and the other atom at a more distant position, leading to the formation of an unsaturated lactone or cyclic ether intermediate. They contain a non-heme iron(II) center in their active site.

An example of extradiol dioxygenase is homogentisate 1,2-dioxygenase, which catalyzes the conversion of homogentisate to maleylacetoacetate in the tyrosine degradation pathway.

Dioxygenases play important roles in various biological processes, including the metabolism of aromatic compounds, the biosynthesis of hormones and signaling molecules, and the detoxification of xenobiotics.

Bacterial proteins are a type of protein that are produced by bacteria as part of their structural or functional components. These proteins can be involved in various cellular processes, such as metabolism, DNA replication, transcription, and translation. They can also play a role in bacterial pathogenesis, helping the bacteria to evade the host's immune system, acquire nutrients, and multiply within the host.

Bacterial proteins can be classified into different categories based on their function, such as:

1. Enzymes: Proteins that catalyze chemical reactions in the bacterial cell.
2. Structural proteins: Proteins that provide structural support and maintain the shape of the bacterial cell.
3. Signaling proteins: Proteins that help bacteria to communicate with each other and coordinate their behavior.
4. Transport proteins: Proteins that facilitate the movement of molecules across the bacterial cell membrane.
5. Toxins: Proteins that are produced by pathogenic bacteria to damage host cells and promote infection.
6. Surface proteins: Proteins that are located on the surface of the bacterial cell and interact with the environment or host cells.

Understanding the structure and function of bacterial proteins is important for developing new antibiotics, vaccines, and other therapeutic strategies to combat bacterial infections.

Catechols are a type of chemical compound that contain a benzene ring with two hydroxyl groups (-OH) attached to it in the ortho position. The term "catechol" is often used interchangeably with "ortho-dihydroxybenzene." Catechols are important in biology because they are produced through the metabolism of certain amino acids, such as phenylalanine and tyrosine, and are involved in the synthesis of various neurotransmitters and hormones. They also have antioxidant properties and can act as reducing agents. In chemistry, catechols can undergo various reactions, such as oxidation and polymerization, to form other classes of compounds.

A bacterial gene is a segment of DNA (or RNA in some viruses) that contains the genetic information necessary for the synthesis of a functional bacterial protein or RNA molecule. These genes are responsible for encoding various characteristics and functions of bacteria such as metabolism, reproduction, and resistance to antibiotics. They can be transmitted between bacteria through horizontal gene transfer mechanisms like conjugation, transformation, and transduction. Bacterial genes are often organized into operons, which are clusters of genes that are transcribed together as a single mRNA molecule.

It's important to note that the term "bacterial gene" is used to describe genetic elements found in bacteria, but not all genetic elements in bacteria are considered genes. For example, some DNA sequences may not encode functional products and are therefore not considered genes. Additionally, some bacterial genes may be plasmid-borne or phage-borne, rather than being located on the bacterial chromosome.

Benzoates are the salts and esters of benzoic acid. They are widely used as preservatives in foods, cosmetics, and pharmaceuticals to prevent the growth of microorganisms. The chemical formula for benzoic acid is C6H5COOH, and when it is combined with a base (like sodium or potassium), it forms a benzoate salt (e.g., sodium benzoate or potassium benzoate). When benzoic acid reacts with an alcohol, it forms a benzoate ester (e.g., methyl benzoate or ethyl benzoate).

Benzoates are generally considered safe for use in food and cosmetics in small quantities. However, some people may have allergies or sensitivities to benzoates, which can cause reactions such as hives, itching, or asthma symptoms. In addition, there is ongoing research into the potential health effects of consuming high levels of benzoates over time, particularly in relation to gut health and the development of certain diseases.

In a medical context, benzoates may also be used as a treatment for certain conditions. For example, sodium benzoate is sometimes given to people with elevated levels of ammonia in their blood (hyperammonemia) to help reduce those levels and prevent brain damage. This is because benzoates can bind with excess ammonia in the body and convert it into a form that can be excreted in urine.

Camphor is a waxy, flammable solid with a strong aroma, derived from the wood of the camphor laurel (Cinnamomum camphora). In a medical context, camphor is used topically as a skin protectant and a counterirritant, and in some over-the-counter products such as nasal decongestants and muscle rubs. It can also be found in some insect repellents and embalming fluids.

Camphor works by stimulating nerve endings and increasing blood flow to the area where it is applied. This can help to relieve pain, reduce inflammation, and alleviate congestion. However, camphor should be used with caution, as it can be toxic if ingested or absorbed in large amounts through the skin. It is important to follow the instructions on product labels carefully and avoid using camphor on broken or irritated skin.

Gene expression regulation in bacteria refers to the complex cellular processes that control the production of proteins from specific genes. This regulation allows bacteria to adapt to changing environmental conditions and ensure the appropriate amount of protein is produced at the right time.

Bacteria have a variety of mechanisms for regulating gene expression, including:

1. Operon structure: Many bacterial genes are organized into operons, which are clusters of genes that are transcribed together as a single mRNA molecule. The expression of these genes can be coordinately regulated by controlling the transcription of the entire operon.
2. Promoter regulation: Transcription is initiated at promoter regions upstream of the gene or operon. Bacteria have regulatory proteins called sigma factors that bind to the promoter and recruit RNA polymerase, the enzyme responsible for transcribing DNA into RNA. The binding of sigma factors can be influenced by environmental signals, allowing for regulation of transcription.
3. Attenuation: Some operons have regulatory regions called attenuators that control transcription termination. These regions contain hairpin structures that can form in the mRNA and cause transcription to stop prematurely. The formation of these hairpins is influenced by the concentration of specific metabolites, allowing for regulation of gene expression based on the availability of those metabolites.
4. Riboswitches: Some bacterial mRNAs contain regulatory elements called riboswitches that bind small molecules directly. When a small molecule binds to the riboswitch, it changes conformation and affects transcription or translation of the associated gene.
5. CRISPR-Cas systems: Bacteria use CRISPR-Cas systems for adaptive immunity against viruses and plasmids. These systems incorporate short sequences from foreign DNA into their own genome, which can then be used to recognize and cleave similar sequences in invading genetic elements.

Overall, gene expression regulation in bacteria is a complex process that allows them to respond quickly and efficiently to changing environmental conditions. Understanding these regulatory mechanisms can provide insights into bacterial physiology and help inform strategies for controlling bacterial growth and behavior.

Molecular sequence data refers to the specific arrangement of molecules, most commonly nucleotides in DNA or RNA, or amino acids in proteins, that make up a biological macromolecule. This data is generated through laboratory techniques such as sequencing, and provides information about the exact order of the constituent molecules. This data is crucial in various fields of biology, including genetics, evolution, and molecular biology, allowing for comparisons between different organisms, identification of genetic variations, and studies of gene function and regulation.

Urocanate hydratase is an enzyme that is involved in the metabolism of the amino acid histidine. The gene for this enzyme is located on chromosome 7q31-q32. Urocanate hydratase catalyzes the conversion of urocanate to imidazoleacetic acid, which is an important step in the degradation of histidine. Defects in this enzyme can lead to a rare genetic disorder called histidinemia, which is characterized by elevated levels of histidine and its metabolites in the blood and urine. However, it's important to note that histidinemia is generally considered a benign condition, and affected individuals usually do not experience any symptoms or complications.

Polyhydroxyalkanoates (PHAs) are naturally occurring, biodegradable polyesters accumulated by some bacteria as intracellular granules under conditions of limiting nutrients, typically carbon source excess and nutrient deficiency. They serve as a form of energy reserve and can be produced from renewable resources such as sugars, lipids, or organic acids. PHAs have potential applications in various fields including packaging, agriculture, pharmaceuticals, and medicine due to their biodegradability and biocompatibility.

A plasmid is a small, circular, double-stranded DNA molecule that is separate from the chromosomal DNA of a bacterium or other organism. Plasmids are typically not essential for the survival of the organism, but they can confer beneficial traits such as antibiotic resistance or the ability to degrade certain types of pollutants.

Plasmids are capable of replicating independently of the chromosomal DNA and can be transferred between bacteria through a process called conjugation. They often contain genes that provide resistance to antibiotics, heavy metals, and other environmental stressors. Plasmids have also been engineered for use in molecular biology as cloning vectors, allowing scientists to replicate and manipulate specific DNA sequences.

Plasmids are important tools in genetic engineering and biotechnology because they can be easily manipulated and transferred between organisms. They have been used to produce vaccines, diagnostic tests, and genetically modified organisms (GMOs) for various applications, including agriculture, medicine, and industry.

Catechol 1,2-dioxygenase is an enzyme that catalyzes the conversion of catechols to muconic acids as part of the meta-cleavage pathway in the breakdown of aromatic compounds in bacteria. The enzyme requires iron as a cofactor and functions by cleaving the aromatic ring between the two hydroxyl groups in the catechol molecule. This reaction is an important step in the degradation of various environmental pollutants, such as polychlorinated biphenyls (PCBs) and lignin, by certain bacterial species.

Adipates are a group of chemical compounds that are esters of adipic acid. Adipic acid is a dicarboxylic acid with the formula (CH₂)₄(COOH)₂. Adipates are commonly used as plasticizers in the manufacture of polyvinyl chloride (PVC) products, such as pipes, cables, and flooring. They can also be found in cosmetics, personal care products, and some food additives.

Adipates are generally considered to be safe for use in consumer products, but like all chemicals, they should be used with caution and in accordance with recommended guidelines. Some adipates have been shown to have potential health effects, such as endocrine disruption and reproductive toxicity, at high levels of exposure. Therefore, it is important to follow proper handling and disposal procedures to minimize exposure.

"Pseudomonas stutzeri" is a gram-negative, rod-shaped bacterium that is widely found in various environments such as soil, water, and plants. It is a non-fermentative, motile bacterium that can survive in diverse conditions due to its metabolic versatility. While it is not typically considered a human pathogen, there have been reports of P. stutzeri causing infections in immunocompromised individuals or those with underlying medical conditions. These infections can include respiratory tract infections, urinary tract infections, and bacteremia. However, such cases are relatively rare, and the bacterium is generally considered to have low pathogenic potential for humans.

Pseudomonas phages are viruses that infect and replicate within bacteria of the genus Pseudomonas. These phages are important in the study of Pseudomonas species, which include several significant human pathogens such as P. aeruginosa. Phages can be used for therapeutic purposes to treat bacterial infections, including those caused by Pseudomonas. Additionally, they are also useful tools in molecular biology and genetic research.

It's worth noting that while "Pseudomonas phages" refers specifically to phages that infect Pseudomonas bacteria, the term "phage" on its own is used to describe any virus that infects and replicates within a bacterial host.

"Pseudomonas syringae" is a gram-negative, aerobic bacterium that is widely found in various environments, including water, soil, and plant surfaces. It is known to be a plant pathogen, causing diseases in a wide range of plants such as beans, peas, tomatoes, and other crops. The bacteria can infect plants through wounds or natural openings, leading to symptoms like spots on leaves, wilting, and dieback. Some strains of "P. syringae" are also associated with frost damage on plants, as they produce a protein that facilitates ice crystal formation at higher temperatures.

It's important to note that while "Pseudomonas syringae" can cause disease in plants, it is not typically considered a human pathogen and does not usually cause illness in humans.

Bacterial DNA refers to the genetic material found in bacteria. It is composed of a double-stranded helix containing four nucleotide bases - adenine (A), thymine (T), guanine (G), and cytosine (C) - that are linked together by phosphodiester bonds. The sequence of these bases in the DNA molecule carries the genetic information necessary for the growth, development, and reproduction of bacteria.

Bacterial DNA is circular in most bacterial species, although some have linear chromosomes. In addition to the main chromosome, many bacteria also contain small circular pieces of DNA called plasmids that can carry additional genes and provide resistance to antibiotics or other environmental stressors.

Unlike eukaryotic cells, which have their DNA enclosed within a nucleus, bacterial DNA is present in the cytoplasm of the cell, where it is in direct contact with the cell's metabolic machinery. This allows for rapid gene expression and regulation in response to changing environmental conditions.

An operon is a genetic unit in prokaryotic organisms (like bacteria) consisting of a cluster of genes that are transcribed together as a single mRNA molecule, which then undergoes translation to produce multiple proteins. This genetic organization allows for the coordinated regulation of genes that are involved in the same metabolic pathway or functional process. The unit typically includes promoter and operator regions that control the transcription of the operon, as well as structural genes encoding the proteins. Operons were first discovered in bacteria, but similar genetic organizations have been found in some eukaryotic organisms, such as yeast.

Parabens are a group of synthetic preservatives that have been widely used in the cosmetics and personal care product industry since the 1920s. They are effective at inhibiting the growth of bacteria, yeasts, and molds, which helps to prolong the shelf life of these products. Parabens are commonly found in shampoos, conditioners, lotions, creams, deodorants, and other personal care items.

The most commonly used parabens include methylparaben, ethylparaben, propylparaben, and butylparaben. These compounds are often used in combination to provide broad-spectrum protection against microbial growth. Parabens work by penetrating the cell wall of microorganisms and disrupting their metabolism, which prevents them from multiplying.

Parabens have been approved for use as preservatives in cosmetics and personal care products by regulatory agencies around the world, including the U.S. Food and Drug Administration (FDA) and the European Commission's Scientific Committee on Consumer Safety (SCCS). However, there has been some controversy surrounding their safety, with concerns raised about their potential to mimic the hormone estrogen in the body and disrupt normal endocrine function.

While some studies have suggested that parabens may be associated with health problems such as breast cancer and reproductive toxicity, the evidence is not conclusive, and more research is needed to fully understand their potential risks. In response to these concerns, many manufacturers have begun to remove parabens from their products or offer paraben-free alternatives. It's important to note that while avoiding parabens may be a personal preference for some individuals, there is currently no scientific consensus on the need to avoid them entirely.

Phenol, also known as carbolic acid, is an organic compound with the molecular formula C6H5OH. It is a white crystalline solid that is slightly soluble in water and has a melting point of 40-42°C. Phenol is a weak acid, but it is quite reactive and can be converted into a variety of other chemicals.

In a medical context, phenol is most commonly used as a disinfectant and antiseptic. It has a characteristic odor that is often described as "tarry" or " medicinal." Phenol is also used in some over-the-counter products, such as mouthwashes and throat lozenges, to help kill bacteria and freshen breath.

However, phenol is also a toxic substance that can cause serious harm if it is swallowed, inhaled, or absorbed through the skin. It can cause irritation and burns to the eyes, skin, and mucous membranes, and it can damage the liver and kidneys if ingested. Long-term exposure to phenol has been linked to an increased risk of cancer.

Because of its potential for harm, phenol is regulated as a hazardous substance in many countries, and it must be handled with care when used in medical or industrial settings.

Benzoic acid is an organic compound with the formula C6H5COOH. It is a colorless crystalline solid that is slightly soluble in water and more soluble in organic solvents. Benzoic acid occurs naturally in various plants and serves as an intermediate in the synthesis of other chemical compounds.

In medical terms, benzoic acid and its salts (sodium benzoate, potassium benzoate) are used as preservatives in food, beverages, and cosmetics to prevent bacterial growth. They work by inhibiting the growth of bacteria, particularly gram-positive bacteria, through the disruption of their energy production processes.

Additionally, sodium benzoate is sometimes used as a treatment for hyperammonemia, a condition characterized by high levels of ammonia in the blood. In this case, sodium benzoate acts as a detoxifying agent by binding to excess ammonia and converting it into a more easily excreted compound called hippuric acid.

It is important to note that benzoic acid and its salts can cause allergic reactions or skin irritation in some individuals, particularly those with pre-existing sensitivities or conditions. As with any medication or chemical substance, it should be used under the guidance of a healthcare professional.

'Escherichia coli' (E. coli) is a type of gram-negative, facultatively anaerobic, rod-shaped bacterium that commonly inhabits the intestinal tract of humans and warm-blooded animals. It is a member of the family Enterobacteriaceae and one of the most well-studied prokaryotic model organisms in molecular biology.

While most E. coli strains are harmless and even beneficial to their hosts, some serotypes can cause various forms of gastrointestinal and extraintestinal illnesses in humans and animals. These pathogenic strains possess virulence factors that enable them to colonize and damage host tissues, leading to diseases such as diarrhea, urinary tract infections, pneumonia, and sepsis.

E. coli is a versatile organism with remarkable genetic diversity, which allows it to adapt to various environmental niches. It can be found in water, soil, food, and various man-made environments, making it an essential indicator of fecal contamination and a common cause of foodborne illnesses. The study of E. coli has contributed significantly to our understanding of fundamental biological processes, including DNA replication, gene regulation, and protein synthesis.

Culture media is a substance that is used to support the growth of microorganisms or cells in an artificial environment, such as a petri dish or test tube. It typically contains nutrients and other factors that are necessary for the growth and survival of the organisms being cultured. There are many different types of culture media, each with its own specific formulation and intended use. Some common examples include blood agar, which is used to culture bacteria; Sabouraud dextrose agar, which is used to culture fungi; and Eagle's minimum essential medium, which is used to culture animal cells.

Chlorobenzoates are a group of chemical compounds that consist of a benzene ring substituted with one or more chlorine atoms and a carboxylate group. They are derivatives of benzoic acid, where one or more hydrogen atoms on the benzene ring have been replaced by chlorine atoms.

Chlorobenzoates can be found in various industrial applications, such as solvents, plasticizers, and pesticides. Some chlorobenzoates also have medical uses, for example, as antimicrobial agents or as intermediates in the synthesis of pharmaceuticals.

However, some chlorobenzoates can be toxic and harmful to the environment, so their use is regulated in many countries. It's important to handle and dispose of these substances properly to minimize potential health and environmental risks.

Molecular cloning is a laboratory technique used to create multiple copies of a specific DNA sequence. This process involves several steps:

1. Isolation: The first step in molecular cloning is to isolate the DNA sequence of interest from the rest of the genomic DNA. This can be done using various methods such as PCR (polymerase chain reaction), restriction enzymes, or hybridization.
2. Vector construction: Once the DNA sequence of interest has been isolated, it must be inserted into a vector, which is a small circular DNA molecule that can replicate independently in a host cell. Common vectors used in molecular cloning include plasmids and phages.
3. Transformation: The constructed vector is then introduced into a host cell, usually a bacterial or yeast cell, through a process called transformation. This can be done using various methods such as electroporation or chemical transformation.
4. Selection: After transformation, the host cells are grown in selective media that allow only those cells containing the vector to grow. This ensures that the DNA sequence of interest has been successfully cloned into the vector.
5. Amplification: Once the host cells have been selected, they can be grown in large quantities to amplify the number of copies of the cloned DNA sequence.

Molecular cloning is a powerful tool in molecular biology and has numerous applications, including the production of recombinant proteins, gene therapy, functional analysis of genes, and genetic engineering.

An amino acid sequence is the specific order of amino acids in a protein or peptide molecule, formed by the linking of the amino group (-NH2) of one amino acid to the carboxyl group (-COOH) of another amino acid through a peptide bond. The sequence is determined by the genetic code and is unique to each type of protein or peptide. It plays a crucial role in determining the three-dimensional structure and function of proteins.

A base sequence in the context of molecular biology refers to the specific order of nucleotides in a DNA or RNA molecule. In DNA, these nucleotides are adenine (A), guanine (G), cytosine (C), and thymine (T). In RNA, uracil (U) takes the place of thymine. The base sequence contains genetic information that is transcribed into RNA and ultimately translated into proteins. It is the exact order of these bases that determines the genetic code and thus the function of the DNA or RNA molecule.

Phenylacetates are a group of organic compounds that contain a phenyl group (a benzene ring with a hydroxyl group) and an acetic acid group. In the context of medicine, sodium phenylacetate is used in the treatment of certain metabolic disorders, such as urea cycle disorders, to help remove excess ammonia from the body. It does this by conjugating with glycine to form phenylacetylglutamine, which can then be excreted in the urine.

It is important to note that the use of phenylacetates should be under the supervision of a medical professional, as improper use or dosage can lead to serious side effects.

Mixed Function Oxygenases (MFOs) are a type of enzyme that catalyze the addition of one atom each from molecular oxygen (O2) to a substrate, while reducing the other oxygen atom to water. These enzymes play a crucial role in the metabolism of various endogenous and exogenous compounds, including drugs, carcinogens, and environmental pollutants.

MFOs are primarily located in the endoplasmic reticulum of cells and consist of two subunits: a flavoprotein component that contains FAD or FMN as a cofactor, and an iron-containing heme protein. The most well-known example of MFO is cytochrome P450, which is involved in the oxidation of xenobiotics and endogenous compounds such as steroids, fatty acids, and vitamins.

MFOs can catalyze a variety of reactions, including hydroxylation, epoxidation, dealkylation, and deamination, among others. These reactions often lead to the activation or detoxification of xenobiotics, making MFOs an important component of the body's defense system against foreign substances. However, in some cases, these reactions can also produce reactive intermediates that may cause toxicity or contribute to the development of diseases such as cancer.

RNA polymerase sigma 54 (σ^54) is not a medical term, but rather a molecular biology concept. It's a type of sigma factor that associates with the core RNA polymerase to form the holoenzyme in bacteria. Sigma factors are subunits of RNA polymerase that recognize and bind to specific promoter sequences on DNA, thereby initiating transcription of genes into messenger RNA (mRNA).

σ^54 is unique because it requires additional energy to melt the DNA strands at the promoter site for transcription initiation. This energy comes from ATP hydrolysis, which is facilitated by a group of proteins called bacterial enhancer-binding proteins (bEBPs). The σ^54-dependent promoters typically contain two conserved sequence elements: an upstream activating sequence (UAS) and a downstream core promoter element (DPE).

In summary, RNA polymerase sigma 54 is a type of sigma factor that plays a crucial role in the initiation of transcription in bacteria. It specifically recognizes and binds to certain promoter sequences on DNA, and its activity requires ATP hydrolysis facilitated by bEBPs.

Alkanes are a group of saturated hydrocarbons, which are characterized by the presence of single bonds between carbon atoms in their molecular structure. The general formula for alkanes is CnH2n+2, where n represents the number of carbon atoms in the molecule.

The simplest and shortest alkane is methane (CH4), which contains one carbon atom and four hydrogen atoms. As the number of carbon atoms increases, the length and complexity of the alkane chain also increase. For example, ethane (C2H6) contains two carbon atoms and six hydrogen atoms, while propane (C3H8) contains three carbon atoms and eight hydrogen atoms.

Alkanes are important components of fossil fuels such as natural gas, crude oil, and coal. They are also used as starting materials in the production of various chemicals and materials, including plastics, fertilizers, and pharmaceuticals. In the medical field, alkanes may be used as anesthetics or as solvents for various medical applications.

Hydrolases are a class of enzymes that help facilitate the breakdown of various types of chemical bonds through a process called hydrolysis, which involves the addition of water. These enzymes catalyze the cleavage of bonds in substrates by adding a molecule of water, leading to the formation of two or more smaller molecules.

Hydrolases play a crucial role in many biological processes, including digestion, metabolism, and detoxification. They can act on a wide range of substrates, such as proteins, lipids, carbohydrates, and nucleic acids, breaking them down into smaller units that can be more easily absorbed or utilized by the body.

Examples of hydrolases include:

1. Proteases: enzymes that break down proteins into smaller peptides or amino acids.
2. Lipases: enzymes that hydrolyze lipids, such as triglycerides, into fatty acids and glycerol.
3. Amylases: enzymes that break down complex carbohydrates, like starches, into simpler sugars, such as glucose.
4. Nucleases: enzymes that cleave nucleic acids, such as DNA or RNA, into smaller nucleotides or oligonucleotides.
5. Phosphatases: enzymes that remove phosphate groups from various substrates, including proteins and lipids.
6. Esterases: enzymes that hydrolyze ester bonds in a variety of substrates, such as those found in some drugs or neurotransmitters.

Hydrolases are essential for maintaining proper cellular function and homeostasis, and their dysregulation can contribute to various diseases and disorders.

Aromatic hydrocarbons, also known as aromatic compounds or arenes, are a class of organic compounds characterized by a planar ring structure with delocalized electrons that give them unique chemical properties. The term "aromatic" was originally used to describe their distinctive odors, but it now refers to their characteristic molecular structure and stability.

Aromatic hydrocarbons contain one or more benzene rings, which are cyclic structures consisting of six carbon atoms arranged in a planar hexagonal shape. Each carbon atom in the benzene ring is bonded to two other carbon atoms and one hydrogen atom, forming alternating double and single bonds between the carbon atoms. However, the delocalized electrons in the benzene ring are evenly distributed around the ring, leading to a unique electronic structure that imparts stability and distinctive chemical properties to aromatic hydrocarbons.

Examples of aromatic hydrocarbons include benzene, toluene, xylene, and naphthalene. These compounds have important uses in industry, but they can also pose health risks if not handled properly. Exposure to high levels of aromatic hydrocarbons has been linked to various health effects, including cancer, neurological damage, and respiratory problems.

Benzene derivatives are chemical compounds that are derived from benzene, which is a simple aromatic hydrocarbon with the molecular formula C6H6. Benzene has a planar, hexagonal ring structure, and its derivatives are formed by replacing one or more of the hydrogen atoms in the benzene molecule with other functional groups.

Benzene derivatives have a wide range of applications in various industries, including pharmaceuticals, dyes, plastics, and explosives. Some common examples of benzene derivatives include toluene, xylene, phenol, aniline, and nitrobenzene. These compounds can have different physical and chemical properties depending on the nature and position of the substituents attached to the benzene ring.

It is important to note that some benzene derivatives are known to be toxic or carcinogenic, and their production, use, and disposal must be carefully regulated to ensure safety and protect public health.

Styrene is an organic compound that is primarily used in the production of polystyrene plastics and resins. In a medical context, styrene is not a term that is typically used to describe a specific disease or condition. However, exposure to high levels of styrene has been linked to potential health effects, including neurological damage, irritation of the eyes, nose, and throat, and possible increased risk of cancer.

Styrene is classified as a possible human carcinogen by the International Agency for Research on Cancer (IARC) based on evidence from animal studies. However, more research is needed to fully understand the potential health risks associated with exposure to styrene in humans.

If you have further questions about styrene or its potential health effects, I would recommend consulting with a healthcare professional or toxicologist who can provide more detailed and personalized advice based on your specific situation and concerns.

Chlorobenzenes are a group of chemical compounds that consist of a benzene ring (a cyclic structure with six carbon atoms in a hexagonal arrangement) substituted with one or more chlorine atoms. They have the general formula C6H5Clx, where x represents the number of chlorine atoms attached to the benzene ring.

Chlorobenzenes are widely used as industrial solvents, fumigants, and intermediates in the production of other chemicals. Some common examples of chlorobenzenes include monochlorobenzene (C6H5Cl), dichlorobenzenes (C6H4Cl2), trichlorobenzenes (C6H3Cl3), and tetrachlorobenzenes (C6H2Cl4).

Exposure to chlorobenzenes can occur through inhalation, skin contact, or ingestion. They are known to be toxic and can cause a range of health effects, including irritation of the eyes, skin, and respiratory tract, headaches, dizziness, nausea, and vomiting. Long-term exposure has been linked to liver and kidney damage, neurological effects, and an increased risk of cancer.

It is important to handle chlorobenzenes with care and follow appropriate safety precautions to minimize exposure. If you suspect that you have been exposed to chlorobenzenes, seek medical attention immediately.

DNA transposable elements, also known as transposons or jumping genes, are mobile genetic elements that can change their position within a genome. They are composed of DNA sequences that include genes encoding the enzymes required for their own movement (transposase) and regulatory elements. When activated, the transposase recognizes specific sequences at the ends of the element and catalyzes the excision and reintegration of the transposable element into a new location in the genome. This process can lead to genetic variation, as the insertion of a transposable element can disrupt the function of nearby genes or create new combinations of gene regulatory elements. Transposable elements are widespread in both prokaryotic and eukaryotic genomes and are thought to play a significant role in genome evolution.

Isomerases are a class of enzymes that catalyze the interconversion of isomers of a single molecule. They do this by rearranging atoms within a molecule to form a new structural arrangement or isomer. Isomerases can act on various types of chemical bonds, including carbon-carbon and carbon-oxygen bonds.

There are several subclasses of isomerases, including:

1. Racemases and epimerases: These enzymes interconvert stereoisomers, which are molecules that have the same molecular formula but different spatial arrangements of their atoms in three-dimensional space.
2. Cis-trans isomerases: These enzymes interconvert cis and trans isomers, which differ in the arrangement of groups on opposite sides of a double bond.
3. Intramolecular oxidoreductases: These enzymes catalyze the transfer of electrons within a single molecule, resulting in the formation of different isomers.
4. Mutases: These enzymes catalyze the transfer of functional groups within a molecule, resulting in the formation of different isomers.
5. Tautomeres: These enzymes catalyze the interconversion of tautomers, which are isomeric forms of a molecule that differ in the location of a movable hydrogen atom and a double bond.

Isomerases play important roles in various biological processes, including metabolism, signaling, and regulation.

Camphor 5-monooxygenase is an enzyme that catalyzes the conversion of camphor to 5-exo-hydroxycamphor, which is the first step in the degradation of camphor by certain bacteria. This enzyme is a member of the cytochrome P450 family and requires NADPH and molecular oxygen for its activity. The gene that encodes this enzyme is often used as a marker for the presence of camphor-degrading bacteria in environmental samples.

Succinates, in a medical context, most commonly refer to the salts or esters of succinic acid. Succinic acid is a dicarboxylic acid that is involved in the Krebs cycle, which is a key metabolic pathway in cells that generates energy through the oxidation of acetyl-CoA derived from carbohydrates, fats, and proteins.

Succinates can also be used as a buffer in medical solutions and as a pharmaceutical intermediate in the synthesis of various drugs. In some cases, succinate may be used as a nutritional supplement or as a component of parenteral nutrition formulations to provide energy and help maintain acid-base balance in patients who are unable to eat normally.

It's worth noting that there is also a condition called "succinic semialdehyde dehydrogenase deficiency" which is a genetic disorder that affects the metabolism of the amino acid gamma-aminobutyric acid (GABA). This condition can lead to an accumulation of succinic semialdehyde and other metabolic byproducts, which can cause neurological symptoms such as developmental delay, hypotonia, and seizures.

I apologize, but there seems to be a misunderstanding. "Soil microbiology" is not a medical term; rather, it is a branch of microbiology that deals with the study of microorganisms in soil. It involves understanding the diversity, ecology, and biochemistry of bacteria, fungi, algae, protozoa, and other microscopic life forms found in soil. This field has applications in agriculture, environmental science, and waste management but is not directly related to medical definitions or human health.

I'm sorry for any confusion, but "Mandelic Acids" is not a recognized medical term or concept in dermatology or medicine. Mandelic acid, however, is a type of chemical compound used in skincare products for various purposes such as exfoliation and reducing hyperpigmentation. It is an aromatic hydroxyacetic acid derived from mandelic almonds. If you have any questions about skincare ingredients or treatments, I'd be happy to help clarify those for you!

A mutation is a permanent change in the DNA sequence of an organism's genome. Mutations can occur spontaneously or be caused by environmental factors such as exposure to radiation, chemicals, or viruses. They may have various effects on the organism, ranging from benign to harmful, depending on where they occur and whether they alter the function of essential proteins. In some cases, mutations can increase an individual's susceptibility to certain diseases or disorders, while in others, they may confer a survival advantage. Mutations are the driving force behind evolution, as they introduce new genetic variability into populations, which can then be acted upon by natural selection.

Protocatechuate-3,4-dioxygenase is an enzyme that catalyzes the ortho-cleavage of protocatechuate, an aromatic compound, in the meta-cleavage pathway of aerobic bacterial catabolism. The enzyme requires Fe(II) as a cofactor and has two subunits: alpha and beta. The alpha subunit contains the catalytic site and is responsible for binding and cleaving protocatechuate, while the beta subunit serves a regulatory role.

The reaction catalyzed by protocatechuate-3,4-dioxygenase is as follows:

Protocatechuate + O2 -> 3-carboxy-cis,cis-muconate

This enzyme plays an important role in the degradation of various aromatic compounds and is widely distributed in bacteria, fungi, and plants. It has been studied extensively as a model system for understanding the mechanisms of aromatic ring cleavage and has potential applications in bioremediation and industrial biotechnology.

Genetic conjugation is a type of genetic transfer that occurs between bacterial cells. It involves the process of one bacterium (the donor) transferring a piece of its DNA to another bacterium (the recipient) through direct contact or via a bridge-like connection called a pilus. This transferred DNA may contain genes that provide the recipient cell with new traits, such as antibiotic resistance or virulence factors, which can make the bacteria more harmful or difficult to treat. Genetic conjugation is an important mechanism for the spread of antibiotic resistance and other traits among bacterial populations.

DNA Sequence Analysis is the systematic determination of the order of nucleotides in a DNA molecule. It is a critical component of modern molecular biology, genetics, and genetic engineering. The process involves determining the exact order of the four nucleotide bases - adenine (A), guanine (G), cytosine (C), and thymine (T) - in a DNA molecule or fragment. This information is used in various applications such as identifying gene mutations, studying evolutionary relationships, developing molecular markers for breeding, and diagnosing genetic diseases.

The process of DNA Sequence Analysis typically involves several steps, including DNA extraction, PCR amplification (if necessary), purification, sequencing reaction, and electrophoresis. The resulting data is then analyzed using specialized software to determine the exact sequence of nucleotides.

In recent years, high-throughput DNA sequencing technologies have revolutionized the field of genomics, enabling the rapid and cost-effective sequencing of entire genomes. This has led to an explosion of genomic data and new insights into the genetic basis of many diseases and traits.

Oxidoreductases are a class of enzymes that catalyze oxidation-reduction reactions, which involve the transfer of electrons from one molecule (the reductant) to another (the oxidant). These enzymes play a crucial role in various biological processes, including energy production, metabolism, and detoxification.

The oxidoreductase-catalyzed reaction typically involves the donation of electrons from a reducing agent (donor) to an oxidizing agent (acceptor), often through the transfer of hydrogen atoms or hydride ions. The enzyme itself does not undergo any permanent chemical change during this process, but rather acts as a catalyst to lower the activation energy required for the reaction to occur.

Oxidoreductases are classified and named based on the type of electron donor or acceptor involved in the reaction. For example, oxidoreductases that act on the CH-OH group of donors are called dehydrogenases, while those that act on the aldehyde or ketone groups are called oxidases. Other examples include reductases, peroxidases, and catalases.

Understanding the function and regulation of oxidoreductases is important for understanding various physiological processes and developing therapeutic strategies for diseases associated with impaired redox homeostasis, such as cancer, neurodegenerative disorders, and cardiovascular disease.

I'm sorry for any confusion, but "octanes" is not a medical term. It is a term used in chemistry and physics, particularly in reference to fuel. Octane is a hydrocarbon molecule found in gasoline, and it is used as a measure of the fuel's ability to resist engine knocking or pinging during combustion.

The octane rating of gasoline typically ranges from 87 (regular) to 91-93 (premium). Higher-octane fuels are often recommended for high-performance vehicles that have higher compression ratios in their engines. If you have any questions related to medical terminology, I'd be happy to help!

Substrate specificity in the context of medical biochemistry and enzymology refers to the ability of an enzyme to selectively bind and catalyze a chemical reaction with a particular substrate (or a group of similar substrates) while discriminating against other molecules that are not substrates. This specificity arises from the three-dimensional structure of the enzyme, which has evolved to match the shape, charge distribution, and functional groups of its physiological substrate(s).

Substrate specificity is a fundamental property of enzymes that enables them to carry out highly selective chemical transformations in the complex cellular environment. The active site of an enzyme, where the catalysis takes place, has a unique conformation that complements the shape and charge distribution of its substrate(s). This ensures efficient recognition, binding, and conversion of the substrate into the desired product while minimizing unwanted side reactions with other molecules.

Substrate specificity can be categorized as:

1. Absolute specificity: An enzyme that can only act on a single substrate or a very narrow group of structurally related substrates, showing no activity towards any other molecule.
2. Group specificity: An enzyme that prefers to act on a particular functional group or class of compounds but can still accommodate minor structural variations within the substrate.
3. Broad or promiscuous specificity: An enzyme that can act on a wide range of structurally diverse substrates, albeit with varying catalytic efficiencies.

Understanding substrate specificity is crucial for elucidating enzymatic mechanisms, designing drugs that target specific enzymes or pathways, and developing biotechnological applications that rely on the controlled manipulation of enzyme activities.

Aldehyde oxidoreductases are a class of enzymes that catalyze the oxidation of aldehydes to carboxylic acids using NAD+ or FAD as cofactors. They play a crucial role in the detoxification of aldehydes generated from various metabolic processes, such as lipid peroxidation and alcohol metabolism. These enzymes are widely distributed in nature and have been identified in bacteria, yeast, plants, and animals.

The oxidation reaction catalyzed by aldehyde oxidoreductases involves the transfer of electrons from the aldehyde substrate to the cofactor, resulting in the formation of a carboxylic acid and reduced NAD+ or FAD. The enzymes are classified into several families based on their sequence similarity and cofactor specificity.

One of the most well-known members of this family is alcohol dehydrogenase (ADH), which catalyzes the oxidation of alcohols to aldehydes or ketones as part of the alcohol metabolism pathway. Another important member is aldehyde dehydrogenase (ALDH), which further oxidizes the aldehydes generated by ADH to carboxylic acids, thereby preventing the accumulation of toxic aldehydes in the body.

Deficiencies in ALDH enzymes have been linked to several human diseases, including alcoholism and certain types of cancer. Therefore, understanding the structure and function of aldehyde oxidoreductases is essential for developing new therapeutic strategies to treat these conditions.

Biofilms are defined as complex communities of microorganisms, such as bacteria and fungi, that adhere to surfaces and are enclosed in a matrix made up of extracellular polymeric substances (EPS). The EPS matrix is composed of polysaccharides, proteins, DNA, and other molecules that provide structural support and protection to the microorganisms within.

Biofilms can form on both living and non-living surfaces, including medical devices, implants, and biological tissues. They are resistant to antibiotics, disinfectants, and host immune responses, making them difficult to eradicate and a significant cause of persistent infections. Biofilms have been implicated in a wide range of medical conditions, including chronic wounds, urinary tract infections, middle ear infections, and device-related infections.

The formation of biofilms typically involves several stages, including initial attachment, microcolony formation, maturation, and dispersion. Understanding the mechanisms underlying biofilm formation and development is crucial for developing effective strategies to prevent and treat biofilm-associated infections.

Naphthalene is not typically referred to as a medical term, but it is a chemical compound with the formula C10H8. It is a white crystalline solid that is aromatic and volatile, and it is known for its distinctive mothball smell. In a medical context, naphthalene is primarily relevant as a potential toxin or irritant.

Naphthalene can be found in some chemical products, such as mothballs and toilet deodorant blocks. Exposure to high levels of naphthalene can cause symptoms such as nausea, vomiting, diarrhea, and headaches. Long-term exposure has been linked to anemia and damage to the liver and nervous system.

In addition, naphthalene is a known environmental pollutant that can be found in air, water, and soil. It is produced by the combustion of fossil fuels and is also released from some industrial processes. Naphthalene has been shown to have toxic effects on aquatic life and may pose a risk to human health if exposure levels are high enough.

Gluconates are a group of salts and esters derived from gluconic acid, a weak organic acid that is naturally produced in the human body during the metabolism of carbohydrates. In medical contexts, gluconates are often used as a source of the essential mineral ions, such as calcium, magnesium, and iron, which are necessary for various bodily functions.

Gluconate salts are commonly used in pharmaceutical and nutritional supplements because they are highly soluble in water, making them easy to absorb and utilize by the body. For example, calcium gluconate is a common treatment for hypocalcemia (low blood calcium levels), while magnesium gluconate is used to treat magnesium deficiency.

Gluconates may also be used as preservatives in some medical products, such as intravenous solutions and eye drops, due to their ability to inhibit the growth of bacteria and other microorganisms. Overall, gluconates are a versatile class of compounds with important applications in medicine and health.

Insertional mutagenesis is a process of introducing new genetic material into an organism's genome at a specific location, which can result in a change or disruption of the function of the gene at that site. This technique is often used in molecular biology research to study gene function and regulation. The introduction of the foreign DNA is typically accomplished through the use of mobile genetic elements, such as transposons or viruses, which are capable of inserting themselves into the genome.

The insertion of the new genetic material can lead to a loss or gain of function in the affected gene, resulting in a mutation. This type of mutagenesis is called "insertional" because the mutation is caused by the insertion of foreign DNA into the genome. The effects of insertional mutagenesis can range from subtle changes in gene expression to the complete inactivation of a gene.

This technique has been widely used in genetic research, including the study of developmental biology, cancer, and genetic diseases. It is also used in the development of genetically modified organisms (GMOs) for agricultural and industrial applications.

Alcohol oxidoreductases are a class of enzymes that catalyze the oxidation of alcohols to aldehydes or ketones, while reducing nicotinamide adenine dinucleotide (NAD+) to NADH. These enzymes play an important role in the metabolism of alcohols and other organic compounds in living organisms.

The most well-known example of an alcohol oxidoreductase is alcohol dehydrogenase (ADH), which is responsible for the oxidation of ethanol to acetaldehyde in the liver during the metabolism of alcoholic beverages. Other examples include aldehyde dehydrogenases (ALDH) and sorbitol dehydrogenase (SDH).

These enzymes are important targets for the development of drugs used to treat alcohol use disorder, as inhibiting their activity can help to reduce the rate of ethanol metabolism and the severity of its effects on the body.

Restriction mapping is a technique used in molecular biology to identify the location and arrangement of specific restriction endonuclease recognition sites within a DNA molecule. Restriction endonucleases are enzymes that cut double-stranded DNA at specific sequences, producing fragments of various lengths. By digesting the DNA with different combinations of these enzymes and analyzing the resulting fragment sizes through techniques such as agarose gel electrophoresis, researchers can generate a restriction map - a visual representation of the locations and distances between recognition sites on the DNA molecule. This information is crucial for various applications, including cloning, genome analysis, and genetic engineering.

Benzyl alcohol is a aromatic alcohol with the chemical formula C6H5CH2OH. It is a colorless liquid with a characteristic, mildly unpleasant odor. Benzyl alcohol is used as a solvent and as an intermediate in the production of other chemicals. In medicine, it is used as a local anesthetic and antimicrobial agent. It can be found in some personal care products, such as cosmetics, shampoos, and sunscreens, as well as in topical medications and intravenous medications.

Anti-bacterial agents, also known as antibiotics, are a type of medication used to treat infections caused by bacteria. These agents work by either killing the bacteria or inhibiting their growth and reproduction. There are several different classes of anti-bacterial agents, including penicillins, cephalosporins, fluoroquinolones, macrolides, and tetracyclines, among others. Each class of antibiotic has a specific mechanism of action and is used to treat certain types of bacterial infections. It's important to note that anti-bacterial agents are not effective against viral infections, such as the common cold or flu. Misuse and overuse of antibiotics can lead to antibiotic resistance, which is a significant global health concern.

Cresols are a group of chemical compounds that are phenolic derivatives of benzene, consisting of methyl substituted cresidines. They have the formula C6H4(OH)(\_3CH3). There are three isomers of cresol, depending on the position of the methyl group: ortho-cresol (m-cresol), meta-cresol (p-cresol), and para-cresol (o-cresol). Cresols are used as disinfectants, antiseptics, and preservatives in various industrial and commercial applications. They have a characteristic odor and are soluble in alcohol and ether. In medical terms, cresols may be used as topical antiseptic agents, but they can also cause skin irritation and sensitization.

Benzyl alcohol is an aromatic alcohol with the chemical formula C6H5CH2OH. It is a colorless liquid with a mild, pleasant odor and is used as a solvent and preservative in cosmetics, medications, and other products. Benzyl alcohol can also be found as a natural component of some essential oils, fruits, and teas.

Benzyl alcohol is not typically considered a "drug" or a medication, but it may have various pharmacological effects when used in certain medical contexts. For example, it has antimicrobial properties and is sometimes used as a preservative in injectable medications to prevent the growth of bacteria and fungi. It can also be used as a local anesthetic or analgesic in some topical creams and ointments.

It's important to note that benzyl alcohol can be harmful or fatal to infants and young children, especially when it is used in high concentrations or when it is introduced into the body through intravenous (IV) routes. Therefore, it should be used with caution in these populations and only under the guidance of a healthcare professional.

Oxidation-Reduction (redox) reactions are a type of chemical reaction involving a transfer of electrons between two species. The substance that loses electrons in the reaction is oxidized, and the substance that gains electrons is reduced. Oxidation and reduction always occur together in a redox reaction, hence the term "oxidation-reduction."

In biological systems, redox reactions play a crucial role in many cellular processes, including energy production, metabolism, and signaling. The transfer of electrons in these reactions is often facilitated by specialized molecules called electron carriers, such as nicotinamide adenine dinucleotide (NAD+/NADH) and flavin adenine dinucleotide (FAD/FADH2).

The oxidation state of an element in a compound is a measure of the number of electrons that have been gained or lost relative to its neutral state. In redox reactions, the oxidation state of one or more elements changes as they gain or lose electrons. The substance that is oxidized has a higher oxidation state, while the substance that is reduced has a lower oxidation state.

Overall, oxidation-reduction reactions are fundamental to the functioning of living organisms and are involved in many important biological processes.

Steroid isomerases are a class of enzymes that catalyze the interconversion of steroids by rearranging various chemical bonds within their structures, leading to the formation of isomers. These enzymes play crucial roles in steroid biosynthesis and metabolism, enabling the production of a diverse array of steroid hormones with distinct biological activities.

There are several types of steroid isomerases, including:

1. 3-beta-hydroxysteroid dehydrogenase/delta(5)-delta(4) isomerase (3-beta-HSD): This enzyme catalyzes the conversion of delta(5) steroids to delta(4) steroids, accompanied by the oxidation of a 3-beta-hydroxyl group to a keto group. It is essential for the biosynthesis of progesterone, cortisol, and aldosterone.
2. Aromatase: This enzyme converts androgens (such as testosterone) into estrogens (such as estradiol) by introducing a phenolic ring, which results in the formation of an aromatic A-ring. It is critical for the development and maintenance of female secondary sexual characteristics.
3. 17-beta-hydroxysteroid dehydrogenase (17-beta-HSD): This enzyme catalyzes the interconversion between 17-keto and 17-beta-hydroxy steroids, playing a key role in the biosynthesis of estrogens, androgens, and glucocorticoids.
4. 5-alpha-reductase: This enzyme catalyzes the conversion of testosterone to dihydrotestosterone (DHT) by reducing the double bond between carbons 4 and 5 in the A-ring. DHT is a more potent androgen than testosterone, playing essential roles in male sexual development and prostate growth.
5. 20-alpha-hydroxysteroid dehydrogenase (20-alpha-HSD): This enzyme catalyzes the conversion of corticosterone to aldosterone, a critical mineralocorticoid involved in regulating electrolyte and fluid balance.
6. 3-beta-hydroxysteroid dehydrogenase (3-beta-HSD): This enzyme catalyzes the conversion of pregnenolone to progesterone and 17-alpha-hydroxypregnenolone to 17-alpha-hydroxyprogesterone, which are essential intermediates in steroid hormone biosynthesis.

These enzymes play crucial roles in the biosynthesis, metabolism, and elimination of various steroid hormones, ensuring proper endocrine function and homeostasis. Dysregulation or mutations in these enzymes can lead to various endocrine disorders, including congenital adrenal hyperplasia (CAH), polycystic ovary syndrome (PCOS), androgen insensitivity syndrome (AIS), and others.

In the context of medicine and pharmacology, "kinetics" refers to the study of how a drug moves throughout the body, including its absorption, distribution, metabolism, and excretion (often abbreviated as ADME). This field is called "pharmacokinetics."

1. Absorption: This is the process of a drug moving from its site of administration into the bloodstream. Factors such as the route of administration (e.g., oral, intravenous, etc.), formulation, and individual physiological differences can affect absorption.

2. Distribution: Once a drug is in the bloodstream, it gets distributed throughout the body to various tissues and organs. This process is influenced by factors like blood flow, protein binding, and lipid solubility of the drug.

3. Metabolism: Drugs are often chemically modified in the body, typically in the liver, through processes known as metabolism. These changes can lead to the formation of active or inactive metabolites, which may then be further distributed, excreted, or undergo additional metabolic transformations.

4. Excretion: This is the process by which drugs and their metabolites are eliminated from the body, primarily through the kidneys (urine) and the liver (bile).

Understanding the kinetics of a drug is crucial for determining its optimal dosing regimen, potential interactions with other medications or foods, and any necessary adjustments for special populations like pediatric or geriatric patients, or those with impaired renal or hepatic function.

Hydroxybenzoates are the salts or esters of hydroxybenzoic acids. They are commonly used as preservatives in food, cosmetics, and pharmaceutical products due to their antimicrobial and antifungal properties. The most common examples include methylparaben, ethylparaben, propylparaben, and butylparaben. These compounds work by inhibiting the growth of bacteria and fungi, thereby increasing the shelf life and safety of various products. However, there has been some concern about their potential health effects, including possible hormonal disruption, and their use in certain applications is being re-evaluated.

Siderophores are low-molecular-weight organic compounds that are secreted by microorganisms, such as bacteria and fungi, to chelate and solubilize iron from their environment. They are able to bind ferric iron (Fe3+) with very high affinity and form a siderophore-iron complex, which can then be taken up by the microorganism through specific transport systems. This allows them to acquire iron even in environments where it is present at very low concentrations or in forms that are not readily available for uptake. Siderophores play an important role in the survival and virulence of many pathogenic microorganisms, as they help them to obtain the iron they need to grow and multiply.

Trinitrotoluene (TNT) is not typically considered a medical term, but it is a chemical compound with the formula C6H2(NO2)3CH3. It is a yellow, odorless solid that is used as an explosive. It is not a substance that would be encountered in a medical context, unless discussing topics such as military injuries or environmental exposures.

A genetic complementation test is a laboratory procedure used in molecular genetics to determine whether two mutated genes can complement each other's function, indicating that they are located at different loci and represent separate alleles. This test involves introducing a normal or wild-type copy of one gene into a cell containing a mutant version of the same gene, and then observing whether the presence of the normal gene restores the normal function of the mutated gene. If the introduction of the normal gene results in the restoration of the normal phenotype, it suggests that the two genes are located at different loci and can complement each other's function. However, if the introduction of the normal gene does not restore the normal phenotype, it suggests that the two genes are located at the same locus and represent different alleles of the same gene. This test is commonly used to map genes and identify genetic interactions in a variety of organisms, including bacteria, yeast, and animals.

ADP Ribose Transferases are a group of enzymes that catalyze the transfer of ADP-ribose groups from donor molecules, such as NAD+ (nicotinamide adenine dinucleotide), to specific acceptor molecules. This transfer process plays a crucial role in various cellular processes, including DNA repair, gene expression regulation, and modulation of protein function.

The reaction catalyzed by ADP Ribose Transferases can be represented as follows:

Donor (NAD+ or NADP+) + Acceptor → Product (NR + ADP-ribosylated acceptor)

There are two main types of ADP Ribose Transferases based on their function and the type of modification they perform:

1. Poly(ADP-ribose) polymerases (PARPs): These enzymes add multiple ADP-ribose units to a single acceptor protein, forming long, linear, or branched chains known as poly(ADP-ribose) (PAR). PARylation is involved in DNA repair, genomic stability, and cell death pathways.
2. Monomeric ADP-ribosyltransferases: These enzymes transfer a single ADP-ribose unit to an acceptor protein, which is called mono(ADP-ribosyl)ation. This modification can regulate protein function, localization, and stability in various cellular processes, such as signal transduction, inflammation, and stress response.

Dysregulation of ADP Ribose Transferases has been implicated in several diseases, including cancer, neurodegenerative disorders, and cardiovascular diseases. Therefore, understanding the function and regulation of these enzymes is essential for developing novel therapeutic strategies to target these conditions.

A sigma factor is a type of protein in bacteria that plays an essential role in the initiation of transcription, which is the first step of gene expression. Sigma factors recognize and bind to specific sequences on DNA, known as promoters, enabling the attachment of RNA polymerase, the enzyme responsible for synthesizing RNA.

In bacteria, RNA polymerase is made up of several subunits, including a core enzyme and a sigma factor. The sigma factor confers specificity to the RNA polymerase by recognizing and binding to the promoter region of the DNA, allowing transcription to begin. Once transcription starts, the sigma factor is released from the RNA polymerase, which then continues to synthesize RNA until it reaches the end of the gene.

Bacteria have multiple sigma factors that allow them to respond to different environmental conditions and stresses by regulating the expression of specific sets of genes. For example, some sigma factors are involved in the regulation of genes required for growth and metabolism under normal conditions, while others are involved in the response to heat shock, starvation, or other stressors.

Overall, sigma factors play a crucial role in regulating gene expression in bacteria, allowing them to adapt to changing environmental conditions and maintain cellular homeostasis.

In the context of medical definitions, 'carbon' is not typically used as a standalone term. Carbon is an element with the symbol C and atomic number 6, which is naturally abundant in the human body and the environment. It is a crucial component of all living organisms, forming the basis of organic compounds, such as proteins, carbohydrates, lipids, and nucleic acids (DNA and RNA).

Carbon forms strong covalent bonds with various elements, allowing for the creation of complex molecules that are essential to life. In this sense, carbon is a fundamental building block of life on Earth. However, it does not have a specific medical definition as an isolated term.

Promoter regions in genetics refer to specific DNA sequences located near the transcription start site of a gene. They serve as binding sites for RNA polymerase and various transcription factors that regulate the initiation of gene transcription. These regulatory elements help control the rate of transcription and, therefore, the level of gene expression. Promoter regions can be composed of different types of sequences, such as the TATA box and CAAT box, and their organization and composition can vary between different genes and species.

Carboxy-lyases are a class of enzymes that catalyze the removal of a carboxyl group from a substrate, often releasing carbon dioxide in the process. These enzymes play important roles in various metabolic pathways, such as the biosynthesis and degradation of amino acids, sugars, and other organic compounds.

Carboxy-lyases are classified under EC number 4.2 in the Enzyme Commission (EC) system. They can be further divided into several subclasses based on their specific mechanisms and substrates. For example, some carboxy-lyases require a cofactor such as biotin or thiamine pyrophosphate to facilitate the decarboxylation reaction, while others do not.

Examples of carboxy-lyases include:

1. Pyruvate decarboxylase: This enzyme catalyzes the conversion of pyruvate to acetaldehyde and carbon dioxide during fermentation in yeast and other organisms.
2. Ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO): This enzyme is essential for photosynthesis in plants and some bacteria, as it catalyzes the fixation of carbon dioxide into an organic molecule during the Calvin cycle.
3. Phosphoenolpyruvate carboxylase: Found in plants, algae, and some bacteria, this enzyme plays a role in anaplerotic reactions that replenish intermediates in the citric acid cycle. It catalyzes the conversion of phosphoenolpyruvate to oxaloacetate and inorganic phosphate.
4. Aspartate transcarbamylase: This enzyme is involved in the biosynthesis of pyrimidines, a class of nucleotides. It catalyzes the transfer of a carboxyl group from carbamoyl aspartate to carbamoyl phosphate, forming cytidine triphosphate (CTP) and fumarate.
5. Urocanase: Found in animals, this enzyme is involved in histidine catabolism. It catalyzes the conversion of urocanate to formiminoglutamate and ammonia.

Salicylates are a group of chemicals found naturally in certain fruits, vegetables, and herbs, as well as in some medications like aspirin. They are named after willow bark's active ingredient, salicin, from which they were derived. Salicylates have anti-inflammatory, analgesic (pain-relieving), and antipyretic (fever-reducing) properties.

In a medical context, salicylates are often used to relieve pain, reduce inflammation, and lower fever. High doses of salicylates can have blood thinning effects and may be used in the prevention of strokes or heart attacks. Commonly prescribed salicylate medications include aspirin, methylsalicylate, and sodium salicylate.

It is important to note that some people may have allergic reactions to salicylates, and overuse can lead to side effects such as stomach ulcers, ringing in the ears, and even kidney or liver damage.

Enzyme induction is a process by which the activity or expression of an enzyme is increased in response to some stimulus, such as a drug, hormone, or other environmental factor. This can occur through several mechanisms, including increasing the transcription of the enzyme's gene, stabilizing the mRNA that encodes the enzyme, or increasing the translation of the mRNA into protein.

In some cases, enzyme induction can be a beneficial process, such as when it helps the body to metabolize and clear drugs more quickly. However, in other cases, enzyme induction can have negative consequences, such as when it leads to the increased metabolism of important endogenous compounds or the activation of harmful procarcinogens.

Enzyme induction is an important concept in pharmacology and toxicology, as it can affect the efficacy and safety of drugs and other xenobiotics. It is also relevant to the study of drug interactions, as the induction of one enzyme by a drug can lead to altered metabolism and effects of another drug that is metabolized by the same enzyme.

Gram-negative bacteria are a type of bacteria that do not retain the crystal violet stain used in the Gram staining method, a standard technique used in microbiology to classify and identify different types of bacteria based on their structural differences. This method was developed by Hans Christian Gram in 1884.

The primary characteristic distinguishing Gram-negative bacteria from Gram-positive bacteria is the composition and structure of their cell walls:

1. Cell wall: Gram-negative bacteria have a thin peptidoglycan layer, making it more susceptible to damage and less rigid compared to Gram-positive bacteria.
2. Outer membrane: They possess an additional outer membrane that contains lipopolysaccharides (LPS), which are endotoxins that can trigger strong immune responses in humans and animals. The outer membrane also contains proteins, known as porins, which form channels for the passage of molecules into and out of the cell.
3. Periplasm: Between the inner and outer membranes lies a compartment called the periplasm, where various enzymes and other molecules are located.

Some examples of Gram-negative bacteria include Escherichia coli (E. coli), Pseudomonas aeruginosa, Klebsiella pneumoniae, Salmonella enterica, Shigella spp., and Neisseria meningitidis. These bacteria are often associated with various infections, such as urinary tract infections, pneumonia, sepsis, and meningitis. Due to their complex cell wall structure, Gram-negative bacteria can be more resistant to certain antibiotics, making them a significant concern in healthcare settings.

I'm sorry for any confusion, but "Hydro-Lyases" is not a recognized medical term or category in biochemistry. It seems like there might be a misunderstanding or a typo in the term.

In biochemistry, "lyases" are enzymes that catalyze the removal of groups from substrates by means other than hydrolysis or oxidation, often forming a double bond or a ring-forming reaction. They are classified and named based on the type of bond they break.

If you meant to ask about a specific enzyme or reaction, could you please provide more context or clarify the term? I'd be happy to help further with accurate information.

Bacteria are single-celled microorganisms that are among the earliest known life forms on Earth. They are typically characterized as having a cell wall and no membrane-bound organelles. The majority of bacteria have a prokaryotic organization, meaning they lack a nucleus and other membrane-bound organelles.

Bacteria exist in diverse environments and can be found in every habitat on Earth, including soil, water, and the bodies of plants and animals. Some bacteria are beneficial to their hosts, while others can cause disease. Beneficial bacteria play important roles in processes such as digestion, nitrogen fixation, and biogeochemical cycling.

Bacteria reproduce asexually through binary fission or budding, and some species can also exchange genetic material through conjugation. They have a wide range of metabolic capabilities, with many using organic compounds as their source of energy, while others are capable of photosynthesis or chemosynthesis.

Bacteria are highly adaptable and can evolve rapidly in response to environmental changes. This has led to the development of antibiotic resistance in some species, which poses a significant public health challenge. Understanding the biology and behavior of bacteria is essential for developing strategies to prevent and treat bacterial infections and diseases.

Homogentisic acid is not a medical condition, but rather an organic compound that plays a role in certain metabolic processes. It is a breakdown product of the amino acid tyrosine, and is normally further metabolized by the enzyme homogentisate 1,2-dioxygenase.

In some individuals, a genetic mutation can result in a deficiency of this enzyme, leading to a condition called alkaptonuria. In alkaptonuria, homogentisic acid accumulates in the body and can cause damage to connective tissues, joints, and other organs over time. Symptoms may include dark urine, arthritis, and pigmentation of the ears and eyes. However, it is important to note that alkaptonuria is a rare condition, affecting only about 1 in 250,000 people worldwide.

Sequence homology, amino acid, refers to the similarity in the order of amino acids in a protein or a portion of a protein between two or more species. This similarity can be used to infer evolutionary relationships and functional similarities between proteins. The higher the degree of sequence homology, the more likely it is that the proteins are related and have similar functions. Sequence homology can be determined through various methods such as pairwise alignment or multiple sequence alignment, which compare the sequences and calculate a score based on the number and type of matching amino acids.

Phenols, also known as phenolic acids or phenol derivatives, are a class of chemical compounds consisting of a hydroxyl group (-OH) attached to an aromatic hydrocarbon ring. In the context of medicine and biology, phenols are often referred to as a type of antioxidant that can be found in various foods and plants.

Phenols have the ability to neutralize free radicals, which are unstable molecules that can cause damage to cells and contribute to the development of chronic diseases such as cancer, heart disease, and neurodegenerative disorders. Some common examples of phenolic compounds include gallic acid, caffeic acid, ferulic acid, and ellagic acid, among many others.

Phenols can also have various pharmacological activities, including anti-inflammatory, antimicrobial, and analgesic effects. However, some phenolic compounds can also be toxic or irritating to the body in high concentrations, so their use as therapeutic agents must be carefully monitored and controlled.

Microbial sensitivity tests, also known as antibiotic susceptibility tests (ASTs) or bacterial susceptibility tests, are laboratory procedures used to determine the effectiveness of various antimicrobial agents against specific microorganisms isolated from a patient's infection. These tests help healthcare providers identify which antibiotics will be most effective in treating an infection and which ones should be avoided due to resistance. The results of these tests can guide appropriate antibiotic therapy, minimize the potential for antibiotic resistance, improve clinical outcomes, and reduce unnecessary side effects or toxicity from ineffective antimicrobials.

There are several methods for performing microbial sensitivity tests, including:

1. Disk diffusion method (Kirby-Bauer test): A standardized paper disk containing a predetermined amount of an antibiotic is placed on an agar plate that has been inoculated with the isolated microorganism. After incubation, the zone of inhibition around the disk is measured to determine the susceptibility or resistance of the organism to that particular antibiotic.
2. Broth dilution method: A series of tubes or wells containing decreasing concentrations of an antimicrobial agent are inoculated with a standardized microbial suspension. After incubation, the minimum inhibitory concentration (MIC) is determined by observing the lowest concentration of the antibiotic that prevents visible growth of the organism.
3. Automated systems: These use sophisticated technology to perform both disk diffusion and broth dilution methods automatically, providing rapid and accurate results for a wide range of microorganisms and antimicrobial agents.

The interpretation of microbial sensitivity test results should be done cautiously, considering factors such as the site of infection, pharmacokinetics and pharmacodynamics of the antibiotic, potential toxicity, and local resistance patterns. Regular monitoring of susceptibility patterns and ongoing antimicrobial stewardship programs are essential to ensure optimal use of these tests and to minimize the development of antibiotic resistance.

Bacterial chromosomes are typically circular, double-stranded DNA molecules that contain the genetic material of bacteria. Unlike eukaryotic cells, which have their DNA housed within a nucleus, bacterial chromosomes are located in the cytoplasm of the cell, often associated with the bacterial nucleoid.

Bacterial chromosomes can vary in size and structure among different species, but they typically contain all of the genetic information necessary for the survival and reproduction of the organism. They may also contain plasmids, which are smaller circular DNA molecules that can carry additional genes and can be transferred between bacteria through a process called conjugation.

One important feature of bacterial chromosomes is their ability to replicate rapidly, allowing bacteria to divide quickly and reproduce in large numbers. The replication of the bacterial chromosome begins at a specific origin point and proceeds in opposite directions until the entire chromosome has been copied. This process is tightly regulated and coordinated with cell division to ensure that each daughter cell receives a complete copy of the genetic material.

Overall, the study of bacterial chromosomes is an important area of research in microbiology, as understanding their structure and function can provide insights into bacterial genetics, evolution, and pathogenesis.

Succinic acid, also known as butanedioic acid, is an organic compound with the chemical formula HOOC(CH2)2COOH. It is a white crystalline powder that is soluble in water and has a slightly acerbic taste. In medicine, succinic acid is not used as a treatment for any specific condition. However, it is a naturally occurring substance found in the body and plays a role in the citric acid cycle, which is a key process in energy production within cells. It can also be found in some foods and is used in the manufacturing of various products such as pharmaceuticals, resins, and perfumes.

Stereoisomerism is a type of isomerism (structural arrangement of atoms) in which molecules have the same molecular formula and sequence of bonded atoms, but differ in the three-dimensional orientation of their atoms in space. This occurs when the molecule contains asymmetric carbon atoms or other rigid structures that prevent free rotation, leading to distinct spatial arrangements of groups of atoms around a central point. Stereoisomers can have different chemical and physical properties, such as optical activity, boiling points, and reactivities, due to differences in their shape and the way they interact with other molecules.

There are two main types of stereoisomerism: enantiomers (mirror-image isomers) and diastereomers (non-mirror-image isomers). Enantiomers are pairs of stereoisomers that are mirror images of each other, but cannot be superimposed on one another. Diastereomers, on the other hand, are non-mirror-image stereoisomers that have different physical and chemical properties.

Stereoisomerism is an important concept in chemistry and biology, as it can affect the biological activity of molecules, such as drugs and natural products. For example, some enantiomers of a drug may be active, while others are inactive or even toxic. Therefore, understanding stereoisomerism is crucial for designing and synthesizing effective and safe drugs.

A multigene family is a group of genetically related genes that share a common ancestry and have similar sequences or structures. These genes are arranged in clusters on a chromosome and often encode proteins with similar functions. They can arise through various mechanisms, including gene duplication, recombination, and transposition. Multigene families play crucial roles in many biological processes, such as development, immunity, and metabolism. Examples of multigene families include the globin genes involved in oxygen transport, the immune system's major histocompatibility complex (MHC) genes, and the cytochrome P450 genes associated with drug metabolism.

Industrial microbiology is not strictly a medical definition, but it is a branch of microbiology that deals with the use of microorganisms for the production of various industrial and commercial products. In a broader sense, it can include the study of microorganisms that are involved in diseases of animals, humans, and plants, as well as those that are beneficial in industrial processes.

In the context of medical microbiology, industrial microbiology may involve the use of microorganisms to produce drugs, vaccines, or other therapeutic agents. For example, certain bacteria and yeasts are used to ferment sugars and produce antibiotics, while other microorganisms are used to create vaccines through a process called attenuation.

Industrial microbiology may also involve the study of microorganisms that can cause contamination in medical settings, such as hospitals or pharmaceutical manufacturing facilities. These microorganisms can cause infections and pose a risk to patients or workers, so it is important to understand their behavior and develop strategies for controlling their growth and spread.

Overall, industrial microbiology plays an important role in the development of new medical technologies and therapies, as well as in ensuring the safety and quality of medical products and environments.

Oxidoreductases, O-demethylating are enzymes that belong to the larger family of oxidoreductases. Specifically, they are involved in catalyzing the removal of methyl groups (-CH3) from various substrates through oxidation reactions. This process is known as O-demethylation.

These enzymes play a crucial role in the metabolism of xenobiotics (foreign substances) such as drugs, toxins, and carcinogens. They help convert these substances into more water-soluble forms, which can then be easily excreted from the body. O-demethylating oxidoreductases are often found in the liver, where they contribute to the detoxification of xenobiotics.

The reaction catalyzed by these enzymes involves the transfer of a hydrogen atom and the addition of an oxygen atom to the methyl group, resulting in the formation of formaldehyde (-CH2O) and a demethylated product. The cytochrome P450 family of enzymes is one example of O-demethylating oxidoreductases.

4-Butyrolactone, also known as gamma-butyrolactone (GBL) or 1,4-butanolide, is a chemical compound with the formula C4H6O2. It is a colorless oily liquid that is used in various industrial and commercial applications, including as an intermediate in the production of other chemicals, as a solvent, and as a flavoring agent.

In the medical field, 4-butyrolactone has been studied for its potential use as a sleep aid and muscle relaxant. However, it is not currently approved by regulatory agencies such as the US Food and Drug Administration (FDA) for these uses. It is also known to have abuse potential and can cause intoxication, sedation, and other central nervous system effects when ingested or inhaled.

It's important to note that 4-butyrolactone is not a medication and should only be used under the supervision of a qualified healthcare professional for approved medical purposes.

Species specificity is a term used in the field of biology, including medicine, to refer to the characteristic of a biological entity (such as a virus, bacterium, or other microorganism) that allows it to interact exclusively or preferentially with a particular species. This means that the biological entity has a strong affinity for, or is only able to infect, a specific host species.

For example, HIV is specifically adapted to infect human cells and does not typically infect other animal species. Similarly, some bacterial toxins are species-specific and can only affect certain types of animals or humans. This concept is important in understanding the transmission dynamics and host range of various pathogens, as well as in developing targeted therapies and vaccines.

Ferredoxins are iron-sulfur proteins that play a crucial role in electron transfer reactions in various biological systems, particularly in photosynthesis and nitrogen fixation. They contain one or more clusters of iron and sulfur atoms (known as the iron-sulfur cluster) that facilitate the movement of electrons between different molecules during metabolic processes.

Ferredoxins have a relatively simple structure, consisting of a polypeptide chain that binds to the iron-sulfur cluster. This simple structure allows ferredoxins to participate in a wide range of redox reactions and makes them versatile electron carriers in biological systems. They can accept electrons from various donors and transfer them to different acceptors, depending on the needs of the cell.

In photosynthesis, ferredoxins play a critical role in the light-dependent reactions by accepting electrons from photosystem I and transferring them to NADP+, forming NADPH. This reduced form of nicotinamide adenine dinucleotide phosphate (NADPH) is then used in the Calvin cycle for carbon fixation and the production of glucose.

In nitrogen fixation, ferredoxins help transfer electrons to the nitrogenase enzyme complex, which reduces atmospheric nitrogen gas (N2) into ammonia (NH3), making it available for assimilation by plants and other organisms.

Overall, ferredoxins are essential components of many metabolic pathways, facilitating electron transfer and energy conversion in various biological systems.

Cystic fibrosis (CF) is a genetic disorder that primarily affects the lungs and digestive system. It is caused by mutations in the CFTR gene, which regulates the movement of salt and water in and out of cells. When this gene is not functioning properly, thick, sticky mucus builds up in various organs, leading to a range of symptoms.

In the lungs, this mucus can clog the airways, making it difficult to breathe and increasing the risk of lung infections. Over time, lung damage can occur, which may lead to respiratory failure. In the digestive system, the thick mucus can prevent the release of digestive enzymes from the pancreas, impairing nutrient absorption and leading to malnutrition. CF can also affect the reproductive system, liver, and other organs.

Symptoms of cystic fibrosis may include persistent coughing, wheezing, lung infections, difficulty gaining weight, greasy stools, and frequent greasy diarrhea. The severity of the disease can vary significantly among individuals, depending on the specific genetic mutations they have inherited.

Currently, there is no cure for cystic fibrosis, but treatments are available to help manage symptoms and slow the progression of the disease. These may include airway clearance techniques, medications to thin mucus, antibiotics to treat infections, enzyme replacement therapy, and a high-calorie, high-fat diet. Lung transplantation is an option for some individuals with advanced lung disease.

Genetic engineering, also known as genetic modification, is a scientific process where the DNA or genetic material of an organism is manipulated to bring about a change in its characteristics. This is typically done by inserting specific genes into the organism's genome using various molecular biology techniques. These new genes may come from the same species (cisgenesis) or a different species (transgenesis). The goal is to produce a desired trait, such as resistance to pests, improved nutritional content, or increased productivity. It's widely used in research, medicine, and agriculture. However, it's important to note that the use of genetically engineered organisms can raise ethical, environmental, and health concerns.

Regulator genes are a type of gene that regulates the activity of other genes in an organism. They do not code for a specific protein product but instead control the expression of other genes by producing regulatory proteins such as transcription factors, repressors, or enhancers. These regulatory proteins bind to specific DNA sequences near the target genes and either promote or inhibit their transcription into mRNA. This allows regulator genes to play a crucial role in coordinating complex biological processes, including development, differentiation, metabolism, and response to environmental stimuli.

There are several types of regulator genes, including:

1. Constitutive regulators: These genes are always active and produce regulatory proteins that control the expression of other genes in a consistent manner.
2. Inducible regulators: These genes respond to specific signals or environmental stimuli by producing regulatory proteins that modulate the expression of target genes.
3. Negative regulators: These genes produce repressor proteins that bind to DNA and inhibit the transcription of target genes, thereby reducing their expression.
4. Positive regulators: These genes produce activator proteins that bind to DNA and promote the transcription of target genes, thereby increasing their expression.
5. Master regulators: These genes control the expression of multiple downstream target genes involved in specific biological processes or developmental pathways.

Regulator genes are essential for maintaining proper gene expression patterns and ensuring normal cellular function. Mutations in regulator genes can lead to various diseases, including cancer, developmental disorders, and metabolic dysfunctions.

Molecular weight, also known as molecular mass, is the mass of a molecule. It is expressed in units of atomic mass units (amu) or daltons (Da). Molecular weight is calculated by adding up the atomic weights of each atom in a molecule. It is a useful property in chemistry and biology, as it can be used to determine the concentration of a substance in a solution, or to calculate the amount of a substance that will react with another in a chemical reaction.

Trichloroethylene (TCE) is a volatile, colorless liquid with a chloroform-like odor. In the medical field, it is primarily used as a surgical anesthetic and an analgesic. However, its use in medicine has significantly decreased due to the availability of safer alternatives.

In a broader context, TCE is widely used in various industries as a solvent for cleaning metal parts, degreasing fabrics and other materials, and as a refrigerant. It's also present in some consumer products like paint removers, adhesives, and typewriter correction fluids.

Prolonged or repeated exposure to TCE can lead to various health issues, including neurological problems, liver and kidney damage, and an increased risk of certain cancers. Therefore, its use is regulated by environmental and occupational safety agencies worldwide.

Quorum sensing is a type of cell-cell communication that allows bacteria to detect and respond to changes in population density by producing, releasing, and responding to signaling molecules called autoinducers. This process enables the coordinated expression of certain genes related to various group behaviors such as biofilm formation, virulence factor production, and bioluminescence. The term "quorum sensing" was coined in 1994 by Bonnie L. Bassler and Susan Goldberg to describe this population-dependent gene regulation mechanism in bacteria.

Alginates are a type of polysaccharide derived from brown algae or produced synthetically, which have gelling and thickening properties. In medical context, they are commonly used as a component in wound dressings, dental impressions, and bowel cleansing products. The gels formed by alginates can provide a protective barrier to wounds, help maintain a moist environment, and promote healing. They can also be used to create a mold of the mouth or other body parts in dental and medical applications. In bowel cleansing, sodium alginates are often combined with sodium bicarbonate and water to form a solution that expands and stimulates bowel movements, helping to prepare the colon for procedures such as colonoscopy.

I'm sorry for any confusion, but "soil pollutants" is not a term typically used in medical definitions. Soil pollution refers to the presence or accumulation of hazardous substances, chemicals, or other pollutants in soil that can have negative effects on plant life, human health, and the environment.

However, if you're asking about potential health effects of exposure to soil pollutants, it could include a variety of symptoms or diseases, depending on the specific pollutant. For example, exposure to lead-contaminated soil can lead to developmental delays in children, while exposure to certain pesticides or industrial chemicals can cause neurological problems, respiratory issues, and even cancer.

If you have more specific information about a particular substance or context, I may be able to provide a more precise answer.

Sorbic acid is a chemical compound that is commonly used as a preservative in various food and cosmetic products. Medically, it's not typically used as a treatment for any specific condition. However, its preservative properties help prevent the growth of bacteria, yeast, and mold, which can improve the safety and shelf life of certain medical supplies such as ointments and eye drops.

The chemical structure of sorbic acid is that of a carboxylic acid with two double bonds, making it a unsaturated fatty acid. It's naturally found in some fruits like rowanberries and serviceberries, but most commercial sorbic acid is synthetically produced.

Food-grade sorbic acid is generally recognized as safe (GRAS) by the U.S. Food and Drug Administration (FDA), and it has a wide range of applications in food preservation, including baked goods, cheeses, wines, and fruit juices. In cosmetics, it's often used to prevent microbial growth in products like creams, lotions, and makeup.

It is important to note that some people may have allergic reactions to sorbic acid or its salts (sorbates), so caution should be exercised when introducing new products containing these substances into personal care routines or diets.

Ketone oxidoreductases are a group of enzymes that catalyze the conversion of ketones to corresponding alcohols or vice versa, through the process of reduction or oxidation. These enzymes play an essential role in various metabolic pathways and biochemical reactions within living organisms.

In the context of medical research and diagnostics, ketone oxidoreductases have gained attention for their potential applications in the development of biosensors to detect and monitor blood ketone levels, particularly in patients with diabetes. Elevated levels of ketones in the blood (known as ketonemia) can indicate a serious complication called diabetic ketoacidosis, which requires prompt medical attention.

One example of a ketone oxidoreductase is the enzyme known as d-beta-hydroxybutyrate dehydrogenase (d-BDH), which catalyzes the conversion of d-beta-hydroxybutyrate to acetoacetate. This reaction is part of the metabolic pathway that breaks down fatty acids for energy production, and it becomes particularly important during periods of low carbohydrate availability or insulin deficiency, as seen in diabetes.

Understanding the function and regulation of ketone oxidoreductases can provide valuable insights into the pathophysiology of metabolic disorders like diabetes and contribute to the development of novel therapeutic strategies for their management.

Pyocyanin is not a medical condition, but rather a blue-green pigment produced by certain strains of the bacterium Pseudomonas aeruginosa. It is a secondary metabolite that plays a role in the pathogenesis of P. aeruginosa infections. Pyocyanin has been found to have various effects on host cells, including inducing oxidative stress, inhibiting chemotaxis and phagocytosis of immune cells, and modulating signaling pathways. It is often used as a marker for the presence of P. aeruginosa in clinical samples and research settings.

In genetics, sequence alignment is the process of arranging two or more DNA, RNA, or protein sequences to identify regions of similarity or homology between them. This is often done using computational methods to compare the nucleotide or amino acid sequences and identify matching patterns, which can provide insight into evolutionary relationships, functional domains, or potential genetic disorders. The alignment process typically involves adjusting gaps and mismatches in the sequences to maximize the similarity between them, resulting in an aligned sequence that can be visually represented and analyzed.

Histidine Ammonia-Lyase (HAL) is an enzyme that catalyzes the conversion of the amino acid L-histidine into trans-urocanic acid, ammonia, and water. This reaction is a part of the histidine catabolism pathway in many organisms, including humans. The enzyme accomplishes this transformation by removing an ammonia group from the imidazole ring of L-histidine, resulting in the formation of trans-urocanic acid. Histidine Ammonia-Lyase plays a crucial role in histidine metabolism and has been studied for its potential implications in various physiological processes and diseases.

Toluidines are a group of organic compounds that consist of a benzene ring with two methyl groups and an amine group. They are derivatives of toluene, hence the name. There are three isomers of toluidines, depending on the position of the amino group: ortho-toluidine, meta-toluidine, and para-toluidine.

In a medical context, toluidines may be used as chemical reagents for diagnostic tests or in research. For example, they have been used in histology to stain tissues for microscopic examination. However, exposure to toluidines has been associated with an increased risk of bladder cancer, so appropriate safety precautions should be taken when handling these chemicals.

Nitrosoguanidines are a type of organic compound that contain a nitroso (NO) group and a guanidine group. They are known to be potent nitrosating agents, which means they can release nitrous acid or related nitrosating species. Nitrosation is a reaction that leads to the formation of N-nitroso compounds, some of which have been associated with an increased risk of cancer in humans. Therefore, nitrosoguanidines are often used in laboratory studies to investigate the mechanisms of nitrosation and the effects of N-nitroso compounds on biological systems. However, they are not typically used as therapeutic agents due to their potential carcinogenicity.

Exotoxins are a type of toxin that are produced and released by certain bacteria into their external environment, including the surrounding tissues or host's bloodstream. These toxins can cause damage to cells and tissues, and contribute to the symptoms and complications associated with bacterial infections.

Exotoxins are typically proteins, and they can have a variety of effects on host cells, depending on their specific structure and function. Some exotoxins act by disrupting the cell membrane, leading to cell lysis or death. Others interfere with intracellular signaling pathways, alter gene expression, or modify host immune responses.

Examples of bacterial infections that are associated with the production of exotoxins include:

* Botulism, caused by Clostridium botulinum
* Diphtheria, caused by Corynebacterium diphtheriae
* Tetanus, caused by Clostridium tetani
* Pertussis (whooping cough), caused by Bordetella pertussis
* Food poisoning, caused by Staphylococcus aureus or Bacillus cereus

Exotoxins can be highly potent and dangerous, and some have been developed as biological weapons. However, many exotoxins are also used in medicine for therapeutic purposes, such as botulinum toxin (Botox) for the treatment of wrinkles or dystonia.

Intramolecular lyases are a type of enzyme that catalyzes the breakdown of a molecule by removing a group of atoms from within the same molecule, creating a new chemical bond in the process. These enzymes specifically cleave a molecule through an intramolecular mechanism, meaning they act on a single substrate molecule. Intramolecular lyases are involved in various biological processes, such as DNA replication, repair, and recombination. They play a crucial role in maintaining the integrity of genetic material by removing or adding specific groups of atoms to DNA or RNA molecules.

'Acinetobacter' is a genus of gram-negative, aerobic bacteria that are commonly found in the environment, including water, soil, and healthcare settings. They are known for their ability to survive in a wide range of temperatures and pH levels, as well as their resistance to many antibiotics.

Some species of Acinetobacter can cause healthcare-associated infections, particularly in patients who are hospitalized, have weakened immune systems, or have been exposed to medical devices such as ventilators or catheters. These infections can include pneumonia, bloodstream infections, wound infections, and meningitis.

Acinetobacter baumannii is one of the most common species associated with human infection and is often resistant to multiple antibiotics, making it a significant public health concern. Infections caused by Acinetobacter can be difficult to treat and may require the use of last-resort antibiotics.

Preventing the spread of Acinetobacter in healthcare settings is important and includes practices such as hand hygiene, environmental cleaning, and contact precautions for patients with known or suspected infection.

Bacterial outer membrane proteins (OMPs) are a type of protein found in the outer membrane of gram-negative bacteria. The outer membrane is a unique characteristic of gram-negative bacteria, and it serves as a barrier that helps protect the bacterium from hostile environments. OMPs play a crucial role in maintaining the structural integrity and selective permeability of the outer membrane. They are involved in various functions such as nutrient uptake, transport, adhesion, and virulence factor secretion.

OMPs are typically composed of beta-barrel structures that span the bacterial outer membrane. These proteins can be classified into several groups based on their size, function, and structure. Some of the well-known OMP families include porins, autotransporters, and two-partner secretion systems.

Porins are the most abundant type of OMPs and form water-filled channels that allow the passive diffusion of small molecules, ions, and nutrients across the outer membrane. Autotransporters are a diverse group of OMPs that play a role in bacterial pathogenesis by secreting virulence factors or acting as adhesins. Two-partner secretion systems involve the cooperation between two proteins to transport effector molecules across the outer membrane.

Understanding the structure and function of bacterial OMPs is essential for developing new antibiotics and therapies that target gram-negative bacteria, which are often resistant to conventional treatments.

Microbial drug resistance is a significant medical issue that refers to the ability of microorganisms (such as bacteria, viruses, fungi, or parasites) to withstand or survive exposure to drugs or medications designed to kill them or limit their growth. This phenomenon has become a major global health concern, particularly in the context of bacterial infections, where it is also known as antibiotic resistance.

Drug resistance arises due to genetic changes in microorganisms that enable them to modify or bypass the effects of antimicrobial agents. These genetic alterations can be caused by mutations or the acquisition of resistance genes through horizontal gene transfer. The resistant microbes then replicate and multiply, forming populations that are increasingly difficult to eradicate with conventional treatments.

The consequences of drug-resistant infections include increased morbidity, mortality, healthcare costs, and the potential for widespread outbreaks. Factors contributing to the emergence and spread of microbial drug resistance include the overuse or misuse of antimicrobials, poor infection control practices, and inadequate surveillance systems.

To address this challenge, it is crucial to promote prudent antibiotic use, strengthen infection prevention and control measures, develop new antimicrobial agents, and invest in research to better understand the mechanisms underlying drug resistance.

Biotransformation is the metabolic modification of a chemical compound, typically a xenobiotic (a foreign chemical substance found within an living organism), by a biological system. This process often involves enzymatic conversion of the parent compound to one or more metabolites, which may be more or less active, toxic, or mutagenic than the original substance.

In the context of pharmacology and toxicology, biotransformation is an important aspect of drug metabolism and elimination from the body. The liver is the primary site of biotransformation, but other organs such as the kidneys, lungs, and gastrointestinal tract can also play a role.

Biotransformation can occur in two phases: phase I reactions involve functionalization of the parent compound through oxidation, reduction, or hydrolysis, while phase II reactions involve conjugation of the metabolite with endogenous molecules such as glucuronic acid, sulfate, or acetate to increase its water solubility and facilitate excretion.

A cell-free system is a biochemical environment in which biological reactions can occur outside of an intact living cell. These systems are often used to study specific cellular processes or pathways, as they allow researchers to control and manipulate the conditions in which the reactions take place. In a cell-free system, the necessary enzymes, substrates, and cofactors for a particular reaction are provided in a test tube or other container, rather than within a whole cell.

Cell-free systems can be derived from various sources, including bacteria, yeast, and mammalian cells. They can be used to study a wide range of cellular processes, such as transcription, translation, protein folding, and metabolism. For example, a cell-free system might be used to express and purify a specific protein, or to investigate the regulation of a particular metabolic pathway.

One advantage of using cell-free systems is that they can provide valuable insights into the mechanisms of cellular processes without the need for time-consuming and resource-intensive cell culture or genetic manipulation. Additionally, because cell-free systems are not constrained by the limitations of a whole cell, they offer greater flexibility in terms of reaction conditions and the ability to study complex or transient interactions between biological molecules.

Overall, cell-free systems are an important tool in molecular biology and biochemistry, providing researchers with a versatile and powerful means of investigating the fundamental processes that underlie life at the cellular level.

Alkane 1-monooxygenase is an enzyme that catalyzes the addition of one oxygen atom from molecular oxygen to a alkane, resulting in the formation of an alcohol. This reaction also requires the cofactor NADH or NADPH and generates water as a byproduct.

The general reaction catalyzed by alkane 1-monooxygenase can be represented as follows:

R-CH3 + O2 + NAD(P)H + H+ -> R-CH2OH + H2O + NAD(P)+

where R represents an alkyl group.

This enzyme is found in various microorganisms, such as bacteria and fungi, and plays a crucial role in their ability to degrade hydrocarbons, including alkanes, which are major components of fossil fuels. Alkane 1-monooxygenase has potential applications in bioremediation and the production of biofuels from renewable resources.

A plant root is not a medical term per se, but it is a term from botany, which is the study of plants. However, I can certainly provide a definition for you.

Plant roots are the underground organs of a plant that typically grow downward into the soil. They serve several important functions, including:

1. Anchorage: Roots help to stabilize the plant and keep it upright in the ground.
2. Absorption: Roots absorb water and nutrients from the soil, which are essential for the plant's growth and development.
3. Conduction: Roots conduct water and nutrients up to the above-ground parts of the plant, such as the stem and leaves.
4. Vegetative reproduction: Some plants can reproduce vegetatively through their roots, producing new plants from root fragments or specialized structures called rhizomes or tubers.

Roots are composed of several different tissues, including the epidermis, cortex, endodermis, and vascular tissue. The epidermis is the outermost layer of the root, which secretes a waxy substance called suberin that helps to prevent water loss. The cortex is the middle layer of the root, which contains cells that store carbohydrates and other nutrients. The endodermis is a thin layer of cells that surrounds the vascular tissue and regulates the movement of water and solutes into and out of the root. The vascular tissue consists of xylem and phloem, which transport water and nutrients throughout the plant.

A plant disease is a disorder that affects the normal growth and development of plants, caused by pathogenic organisms such as bacteria, viruses, fungi, parasites, or nematodes, as well as environmental factors like nutrient deficiencies, extreme temperatures, or physical damage. These diseases can cause various symptoms, including discoloration, wilting, stunted growth, necrosis, and reduced yield or productivity, which can have significant economic and ecological impacts.

Carbon-sulfur lyases are a class of enzymes that catalyze the cleavage of carbon-sulfur bonds in organic compounds, resulting in the formation of a new double bond. These enzymes play important roles in various biological processes, including the metabolism of sulfur-containing amino acids and the biosynthesis of certain cofactors and secondary metabolites.

Carbon-sulfur lyases are classified under EC number 4.4.1, which includes enzymes that catalyze the formation of carbon-carbon bonds by means other than those involving oxidoreductases. Within this class, carbon-sulfur lyases are further divided into several subcategories based on their specific reaction mechanisms and substrate specificities.

One example of a carbon-sulfur lyase is cysteine desulfurase (EC 2.8.1.7), which catalyzes the formation of alanine and a persulfide group from L-cysteine, releasing elemental sulfur as a byproduct. This enzyme plays a critical role in the biosynthesis of iron-sulfur clusters, which are essential cofactors for many proteins involved in electron transfer reactions.

Another example is 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2), which catalyzes the formation of a persulfide group on a cysteine residue in the enzyme itself, using 3-mercaptopyruvate as a sulfur donor. This enzyme is involved in the biosynthesis of various secondary metabolites containing sulfur atoms, such as allicin in garlic and penicillamine in certain fungi.

Overall, carbon-sulfur lyases are important enzymes that play critical roles in various biological processes involving the cleavage or formation of carbon-sulfur bonds.

A bacterial genome is the complete set of genetic material, including both DNA and RNA, found within a single bacterium. It contains all the hereditary information necessary for the bacterium to grow, reproduce, and survive in its environment. The bacterial genome typically includes circular chromosomes, as well as plasmids, which are smaller, circular DNA molecules that can carry additional genes. These genes encode various functional elements such as enzymes, structural proteins, and regulatory sequences that determine the bacterium's characteristics and behavior.

Bacterial genomes vary widely in size, ranging from around 130 kilobases (kb) in Mycoplasma genitalium to over 14 megabases (Mb) in Sorangium cellulosum. The complete sequencing and analysis of bacterial genomes have provided valuable insights into the biology, evolution, and pathogenicity of bacteria, enabling researchers to better understand their roles in various diseases and potential applications in biotechnology.

Hydrogen-ion concentration, also known as pH, is a measure of the acidity or basicity of a solution. It is defined as the negative logarithm (to the base 10) of the hydrogen ion activity in a solution. The standard unit of measurement is the pH unit. A pH of 7 is neutral, less than 7 is acidic, and greater than 7 is basic.

In medical terms, hydrogen-ion concentration is important for maintaining homeostasis within the body. For example, in the stomach, a high hydrogen-ion concentration (low pH) is necessary for the digestion of food. However, in other parts of the body such as blood, a high hydrogen-ion concentration can be harmful and lead to acidosis. Conversely, a low hydrogen-ion concentration (high pH) in the blood can lead to alkalosis. Both acidosis and alkalosis can have serious consequences on various organ systems if not corrected.

Solvents, in a medical context, are substances that are capable of dissolving or dispersing other materials, often used in the preparation of medications and solutions. They are commonly organic chemicals that can liquefy various substances, making it possible to administer them in different forms, such as oral solutions, topical creams, or injectable drugs.

However, it is essential to recognize that solvents may pose health risks if mishandled or misused, particularly when they contain volatile organic compounds (VOCs). Prolonged exposure to these VOCs can lead to adverse health effects, including respiratory issues, neurological damage, and even cancer. Therefore, it is crucial to handle solvents with care and follow safety guidelines to minimize potential health hazards.

"Pseudomonas mendocina" is a gram-negative, rod-shaped bacterium that belongs to the family Pseudomonadaceae. It is commonly found in soil and water environments. This species is generally considered to be nonpathogenic, meaning it does not typically cause disease in humans. However, there have been rare cases of infection associated with this bacterium, particularly in individuals with weakened immune systems.

The name "mendocina" comes from the location where the bacterium was first isolated, which is Mendocino County in California, USA. Like other Pseudomonas species, it can survive under a wide range of environmental conditions and can metabolize various organic compounds as its energy source.

It's worth noting that while "Pseudomonas mendocina" is not a common human pathogen, identifying the specific bacterial species involved in an infection is important for appropriate treatment. Therefore, laboratory testing and identification of bacteria to the species level can be helpful in guiding medical decision-making.

Glucuronic acid is a physiological important organic acid, which is a derivative of glucose. It is formed by the oxidation of the primary alcohol group of glucose to form a carboxyl group at the sixth position. Glucuronic acid plays a crucial role in the detoxification process in the body as it conjugates with toxic substances, making them water-soluble and facilitating their excretion through urine or bile. This process is known as glucuronidation. It is also a component of various polysaccharides, such as heparan sulfate and chondroitin sulfate, which are found in the extracellular matrix of connective tissues.

Alkanesulfonates are organic compounds that consist of a hydrocarbon chain, typically consisting of alkane molecules, which is bonded to a sulfonate group. The sulfonate group (-SO3-) consists of a sulfur atom bonded to three oxygen atoms, with one of the oxygen atoms carrying a negative charge.

Alkanesulfonates are commonly used as detergents and surfactants due to their ability to reduce surface tension and improve the wetting, emulsifying, and dispersing properties of liquids. They are also used in various industrial applications, such as in the production of paper, textiles, and leather.

In medical terms, alkanesulfonates may be used as topical antimicrobial agents or as ingredients in personal care products. However, some alkanesulfonates have been found to have potential health and environmental hazards, such as irritation of the skin and eyes, respiratory effects, and potential toxicity to aquatic life. Therefore, their use is subject to regulatory oversight and safety assessments.

Biotechnology is defined in the medical field as a branch of technology that utilizes biological processes, organisms, or systems to create products that are technologically useful. This can include various methods and techniques such as genetic engineering, cell culture, fermentation, and others. The goal of biotechnology is to harness the power of biology to produce drugs, vaccines, diagnostic tests, biofuels, and other industrial products, as well as to advance our understanding of living systems for medical and scientific research.

The use of biotechnology has led to significant advances in medicine, including the development of new treatments for genetic diseases, improved methods for diagnosing illnesses, and the creation of vaccines to prevent infectious diseases. However, it also raises ethical and societal concerns related to issues such as genetic modification of organisms, cloning, and biosecurity.

Spectrophotometry is a technical analytical method used in the field of medicine and science to measure the amount of light absorbed or transmitted by a substance at specific wavelengths. This technique involves the use of a spectrophotometer, an instrument that measures the intensity of light as it passes through a sample.

In medical applications, spectrophotometry is often used in laboratory settings to analyze various biological samples such as blood, urine, and tissues. For example, it can be used to measure the concentration of specific chemicals or compounds in a sample by measuring the amount of light that is absorbed or transmitted at specific wavelengths.

In addition, spectrophotometry can also be used to assess the properties of biological tissues, such as their optical density and thickness. This information can be useful in the diagnosis and treatment of various medical conditions, including skin disorders, eye diseases, and cancer.

Overall, spectrophotometry is a valuable tool for medical professionals and researchers seeking to understand the composition and properties of various biological samples and tissues.

Ketosteroids are a type of steroid compound that contain a ketone functional group in their chemical structure. They are derived from cholesterol and are present in both animal and plant tissues. Some ketosteroids are produced endogenously, while others can be introduced exogenously through the diet or medication.

Endogenous ketosteroids include steroid hormones such as testosterone, estradiol, and cortisol, which contain a ketone group in their structure. Exogenous ketosteroids can be found in certain medications, such as those used to treat hormonal imbalances or inflammation.

Ketosteroids have been studied for their potential therapeutic uses, including as anti-inflammatory agents and for the treatment of hormone-related disorders. However, more research is needed to fully understand their mechanisms of action and potential benefits.

Extrachromosomal inheritance refers to the transmission of genetic information that occurs outside of the chromosomes, which are the structures in the cell nucleus that typically contain and transmit genetic material. This type of inheritance is relatively rare and can involve various types of genetic elements, such as plasmids or transposons.

In extrachromosomal inheritance, these genetic elements can replicate independently of the chromosomes and be passed on to offspring through mechanisms other than traditional Mendelian inheritance. This can lead to non-Mendelian patterns of inheritance, where traits do not follow the expected dominant or recessive patterns.

One example of extrachromosomal inheritance is the transmission of mitochondrial DNA (mtDNA), which occurs in the cytoplasm of the cell rather than on the chromosomes. Mitochondria are organelles that produce energy for the cell, and they contain their own small circular genome that is inherited maternally. Mutations in mtDNA can lead to a variety of genetic disorders, including mitochondrial diseases.

Overall, extrachromosomal inheritance is an important area of study in genetics, as it can help researchers better understand the complex ways in which genetic information is transmitted and expressed in living organisms.

A "colony count" is a method used to estimate the number of viable microorganisms, such as bacteria or fungi, in a sample. In this technique, a known volume of the sample is spread onto the surface of a solid nutrient medium in a petri dish and then incubated under conditions that allow the microorganisms to grow and form visible colonies. Each colony that grows on the plate represents an individual cell (or small cluster of cells) from the original sample that was able to divide and grow under the given conditions. By counting the number of colonies that form, researchers can make a rough estimate of the concentration of microorganisms in the original sample.

The term "microbial" simply refers to microscopic organisms, such as bacteria, fungi, or viruses. Therefore, a "colony count, microbial" is a general term that encompasses the use of colony counting techniques to estimate the number of any type of microorganism in a sample.

Colony counts are used in various fields, including medical research, food safety testing, and environmental monitoring, to assess the levels of contamination or the effectiveness of disinfection procedures. However, it is important to note that colony counts may not always provide an accurate measure of the total number of microorganisms present in a sample, as some cells may be injured or unable to grow under the conditions used for counting. Additionally, some microorganisms may form clusters or chains that can appear as single colonies, leading to an overestimation of the true cell count.

Genetic transcription is the process by which the information in a strand of DNA is used to create a complementary RNA molecule. This process is the first step in gene expression, where the genetic code in DNA is converted into a form that can be used to produce proteins or functional RNAs.

During transcription, an enzyme called RNA polymerase binds to the DNA template strand and reads the sequence of nucleotide bases. As it moves along the template, it adds complementary RNA nucleotides to the growing RNA chain, creating a single-stranded RNA molecule that is complementary to the DNA template strand. Once transcription is complete, the RNA molecule may undergo further processing before it can be translated into protein or perform its functional role in the cell.

Transcription can be either "constitutive" or "regulated." Constitutive transcription occurs at a relatively constant rate and produces essential proteins that are required for basic cellular functions. Regulated transcription, on the other hand, is subject to control by various intracellular and extracellular signals, allowing cells to respond to changing environmental conditions or developmental cues.

Vanillic Acid is not a medical term, but it is a chemical compound with the name 4-hydroxy-3-methoxybenzoic acid. It is a type of phenolic acid that occurs naturally in some foods and plants, including vanilla beans, pineapples, and certain types of mushrooms.

Vanillic Acid has been studied for its potential antioxidant, anti-inflammatory, and neuroprotective properties. However, it is not considered a medication or a medical treatment and does not have a specific medical definition.

Benzaldehyde is an organic compound with the formula C6H5CHO. It is the simplest aromatic aldehyde, and it consists of a benzene ring attached to a formyl group. Benzaldehyde is a colorless liquid with a characteristic almond-like odor.

Benzaldehyde occurs naturally in various plants, including bitter almonds, cherries, peaches, and apricots. It is used in many industrial applications, such as in the production of perfumes, flavorings, and dyes. In addition, benzaldehyde has been used in medical research for its potential therapeutic effects, such as its anti-inflammatory and antimicrobial properties.

However, it is important to note that benzaldehyde can be toxic in high concentrations and may cause irritation to the skin, eyes, and respiratory system. Therefore, it should be handled with care and used in accordance with appropriate safety guidelines.

Water microbiology is not a formal medical term, but rather a branch of microbiology that deals with the study of microorganisms found in water. It involves the identification, enumeration, and characterization of bacteria, viruses, parasites, and other microscopic organisms present in water sources such as lakes, rivers, oceans, groundwater, drinking water, and wastewater.

In a medical context, water microbiology is relevant to public health because it helps to assess the safety of water supplies for human consumption and recreational activities. It also plays a critical role in understanding and preventing waterborne diseases caused by pathogenic microorganisms that can lead to illnesses such as diarrhea, skin infections, and respiratory problems.

Water microbiologists use various techniques to study water microorganisms, including culturing, microscopy, genetic analysis, and biochemical tests. They also investigate the ecology of these organisms, their interactions with other species, and their response to environmental factors such as temperature, pH, and nutrient availability.

Overall, water microbiology is a vital field that helps ensure the safety of our water resources and protects public health.

Equilenin is an estrogen compound that is found in certain plants and is also produced synthetically. It is structurally similar to the natural estrogens produced by the human body, such as estradiol and estrone. Equilenin has been used in some forms of hormone replacement therapy and in the treatment of certain medical conditions, such as breast cancer and prostate cancer. However, its use is not as common as other synthetic estrogens due to its potential side effects and risks.

Like other estrogen compounds, equilenin works by binding to estrogen receptors in the body, which are found in various tissues including the breasts, uterus, bones, and brain. This binding action can stimulate cell growth and development, as well as regulate various physiological processes such as bone density, cholesterol levels, and mood.

It is important to note that the use of estrogen therapy, including equilenin, carries certain risks, particularly for postmenopausal women. Long-term use of estrogen therapy has been associated with an increased risk of breast cancer, endometrial cancer, stroke, and blood clots. Therefore, it should only be used under the close supervision of a healthcare provider and for the shortest duration necessary to treat the underlying medical condition.

Carboxylic acids are organic compounds that contain a carboxyl group, which is a functional group made up of a carbon atom doubly bonded to an oxygen atom and single bonded to a hydroxyl group. The general formula for a carboxylic acid is R-COOH, where R represents the rest of the molecule.

Carboxylic acids can be found in various natural sources such as in fruits, vegetables, and animal products. Some common examples of carboxylic acids include formic acid (HCOOH), acetic acid (CH3COOH), propionic acid (C2H5COOH), and butyric acid (C3H7COOH).

Carboxylic acids have a variety of uses in industry, including as food additives, pharmaceuticals, and industrial chemicals. They are also important intermediates in the synthesis of other organic compounds. In the body, carboxylic acids play important roles in metabolism and energy production.

Virulence factors are characteristics or components of a microorganism, such as bacteria, viruses, fungi, or parasites, that contribute to its ability to cause damage or disease in a host organism. These factors can include various structures, enzymes, or toxins that allow the pathogen to evade the host's immune system, attach to and invade host tissues, obtain nutrients from the host, or damage host cells directly.

Examples of virulence factors in bacteria include:

1. Endotoxins: lipopolysaccharides found in the outer membrane of Gram-negative bacteria that can trigger a strong immune response and inflammation.
2. Exotoxins: proteins secreted by some bacteria that have toxic effects on host cells, such as botulinum toxin produced by Clostridium botulinum or diphtheria toxin produced by Corynebacterium diphtheriae.
3. Adhesins: structures that help the bacterium attach to host tissues, such as fimbriae or pili in Escherichia coli.
4. Capsules: thick layers of polysaccharides or proteins that surround some bacteria and protect them from the host's immune system, like those found in Streptococcus pneumoniae or Klebsiella pneumoniae.
5. Invasins: proteins that enable bacteria to invade and enter host cells, such as internalins in Listeria monocytogenes.
6. Enzymes: proteins that help bacteria obtain nutrients from the host by breaking down various molecules, like hemolysins that lyse red blood cells to release iron or hyaluronidases that degrade connective tissue.

Understanding virulence factors is crucial for developing effective strategies to prevent and treat infectious diseases caused by these microorganisms.

I'm sorry for any confusion, but "Polyesters" is not a medical term. It is a term used in materials science and textile industry to describe a type of synthetic fiber made from polymers characterized by the presence of ester groups in their main chain. If you have any questions related to medical terminology or concepts, I'd be happy to help with those instead!

Temperature, in a medical context, is a measure of the degree of hotness or coldness of a body or environment. It is usually measured using a thermometer and reported in degrees Celsius (°C), degrees Fahrenheit (°F), or kelvin (K). In the human body, normal core temperature ranges from about 36.5-37.5°C (97.7-99.5°F) when measured rectally, and can vary slightly depending on factors such as time of day, physical activity, and menstrual cycle. Elevated body temperature is a common sign of infection or inflammation, while abnormally low body temperature can indicate hypothermia or other medical conditions.

Octanols are a type of chemical compound known as alcohols, specifically they are fatty alcohols with a chain of 8 carbon atoms. The most common octanol is called 1-octanol, which has the chemical formula CH3(CH2)7OH. It is a colorless oily liquid that is used in the synthesis of other chemicals and as a solvent. Octanols are often used as standards for measuring the partition coefficient between octanol and water, which is a measure of a compound's hydrophobicity or lipophilicity. This property is important in understanding how a compound may be absorbed, distributed, metabolized, and excreted in the body.

Ureohydrolases are a class of enzymes that catalyze the hydrolysis of urea into ammonia and carbon dioxide. The reaction is as follows:

CO(NH2)2 + H2O → 2 NH3 + CO2

The most well-known example of a ureohydrolase is the enzyme urease, which is found in many organisms including bacteria, fungi, and plants. Ureases are important virulence factors for some pathogenic bacteria, as they allow these microorganisms to survive in the acidic environment of the urinary tract by metabolizing urea present in the urine.

Ureohydrolases play a role in various biological processes, such as nitrogen metabolism and pH regulation. However, their activity can also contribute to the formation of kidney stones and other urological disorders if excessive amounts of ammonia are produced in the urinary tract.

... CR30RNSLL(pADPTel). Pseudomonas putida is an example for plant growth promoting Rhizobacterium, which ... Thus, use of P. putida in many research labs is preferable to some other Pseudomonas species, such as Pseudomonas aeruginosa, ... Phylogenomic analysis reclassified the strain KT2440 in a new species Pseudomonas alloputida. Pseudomonas putida's amenability ... nov., Pseudomonas inefficax sp. nov., Pseudomonas persica sp. nov., and Pseudomonas shirazica sp. nov". Systematic and Applied ...
Reitz MS, Rodwell VW (1970). "Delta-aminovaleramidase of Pseudomonas putida". J. Biol. Chem. 245 (12): 3091-6. PMID 5432799. ...
... from Pseudomonas putida has a core structure consisting of 3-layers, alpha/beta/alpha. As of late 2007, 4 ... Tsuru D, Oka I, Yoshimoto T (1976). "Creatinine decomposing enzymes in Pseudomonas putida". Agric. Biol. Chem. 40 (5): 1011- ... "Cloning of the creatinine amidohydrolase gene from Pseudomonas sp. PS-7". Biosci. Biotechnol. Biochem. 59 (7): 1331-1332. doi: ...
Jensen RH, Woolfolk CA (August 1985). "Formation of Filaments by Pseudomonas putida". Applied and Environmental Microbiology. ... and ultrastructural properties of Pseudomonas putida biofilms". Journal of Bacteriology. 185 (20): 6199-6204. doi:10.1128/JB. ... the Stenotrophomonas maltophilia diffusible signal factor influences biofilm formation and polymyxin tolerance in Pseudomonas ...
For example, in Pseudomonas putida, scientists have engineered a strain to overexpress glc and glcDEF, operons that contain ... The glyoxylic acid pathway is commonly studied in the Pseudomonas genus as many species such as P. putida are known to be ... "Taxis of Pseudomonas putida F1 toward Phenylacetic Acid Is Mediated by the Energy Taxis Receptor Aer2". Applied and ... "Engineering Pseudomonas putida KT2440 for efficient ethylene glycol utilization". Metabolic Engineering. 48: 197-207. doi: ...
It is isolated from Pseudomonas putida. Rheinwald JG, Chakrabarty AM, Gunsalus IC (March 1973). "A transmissible plasmid ... "Complete nucleotide sequence of the 5-exo-hydroxycamphor dehydrogenase gene on the CAM plasmid of Pseudomonas putida (ATCC ... involved in cytochrome P-450cam hydroxylase of Pseudomonas putida". Journal of Biochemistry. 106 (5): 831-6. doi:10.1093/ ... controlling camphor oxidation in Pseudomonas putida". Proceedings of the National Academy of Sciences of the United States of ...
Klamann E, Lingens F (1980). "Degradation of (-)-ephedrine by Pseudomonas putida. Detection of (-)-ephedrine: NAD+- ...
Hopper DJ, Kaderbhai MA (April 2003). "The quinohaemoprotein lupanine hydroxylase from Pseudomonas putida". Biochimica et ... 2 H+ The enzyme isolated from Pseudomonas putida contains heme c and requires pyrroloquinoline quinone (PQQ) for activity ... a quinocytochrome c from an alkaloid-degrading Pseudomonas sp". The Biochemical Journal. 279 ( Pt 1): 105-9. doi:10.1042/ ...
It is closely related to Pseudomonas putida. Nicolas Vodovar; David Vallenet; Stéphane Cruveiller; Zoé Rouy; Valérie Barbe; ... Type strain of Pseudomonas entomophila at BacDive - the Bacterial Diversity Metadatabase v t e (Articles with short description ... Pseudomonas entomophila is a strain of bacterium that lives in the soil and can infect insects. ... "Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila" (PDF). ...
Otha Y, Ribbons DW (1970). "Crystallization of orcinol hydroxylase from Pseudomonas putida". FEBS Lett. 11 (3): 189-192. doi: ...
US Patent 4,259,444 Chakrabarty, AM; Mylroie, JR; Friello, DA; Vacca, JG (1975). "Transformation of Pseudomonas putida and ... Shaham, M; Chakrabarty, AM; Gunsalus, IC (1973). "Camphor plasmid-mediated chromosomal transfer in Pseudomonas putida". Journal ... now called Pseudomonas putida) capable of consuming oil one or two orders of magnitude faster than the previous four strains of ... "A transmissible plasmid controlling camphor oxidation in Pseudomonas putida". Proceedings of the National Academy of Sciences ...
Sevrioukova IF, Li H, Poulos TL (February 2004). "Crystal structure of putidaredoxin reductase from Pseudomonas putida, the ... component of the P450cam monooxygenase system from Pseudomonas putida". Journal of Molecular Biology. 333 (2): 377-92. doi: ... "Structure of C73G putidaredoxin from Pseudomonas putida" (PDF). Acta Crystallographica Section D. 60 (Pt 5): 816-22. doi: ... involved in cytochrome P-450cam hydroxylase of Pseudomonas putida". Journal of Biochemistry. 106 (5): 831-6. PMID 2613690. ...
Pseudomonas putida: Indian (Bengali) inventor and microbiologist Ananda Mohan Chakrabarty created a variety of man-made ... "Transformation of Pseudomonas putida and Escherichia coli with plasmid-linked drug-resistance factor DNA". Proceedings of the ... "Camphor plasmid-mediated chromosomal transfer in Pseudomonas putida". Journal of Bacteriology. 116 (2): 944-9. doi:10.1128/JB. ... "A transmissible plasmid controlling camphor oxidation in Pseudomonas putida". Proceedings of the National Academy of Sciences ...
... (Bacteriophage gh-1) is a bacteriophage capable of infecting susceptible strains of Pseudomonas putida. ... "Pseudomonas putida bacteriophage gh-1 ATCC ® 12633-B1™". - ATCC database entry for gh-1 "Pseudomonad phage gh-1". - Virus-Host ... Lee, L.; Boezi, J. (1966). "Characterization of bacteriophage gh-1 for Pseudomonas putida". Journal of Bacteriology. American ... Kovalyova, I.; Kropinski, A. (2003). "The complete genomic sequence of lytic bacteriophage gh-1 infecting Pseudomonas putida - ...
The bacterium Pseudomonas putida serotype M10 produces a naturally-occurring NADH-dependent morphinone reductase that can work ... Long MT, Hailes AM, Kirby GW, Bruce NC (October 1995). "Transformations of morphine alkaloids by Pseudomonas putida M10". ...
Payton CW, Chang YF (1982). "delta1-piperideine-2-carboxylate reductase of Pseudomonas putida". J. Bacteriol. 149 (3): 864-71. ...
Chohnan S, Akagi K, Takamura Y (January 2003). "Functions of malonate decarboxylase subunits from Pseudomonas putida". ...
"Chaotropic solutes cause water stress in Pseudomonas putida". Environmental Microbiology. 5 (12): 1270-1280. doi:10.1111/j.1462 ...
"Chaotropic solutes cause water stress in Pseudomonas putida". Environmental Microbiology. 5 (12): 1270-1280. doi:10.1111/j.1462 ...
... aeruginosa phage LUZ19 (a Phikmvvirus) Pseudomonas aeruginosa phage ΦKZ Pseudomonas putida phage gh-1 Culture ... Pseudomonas at origin of world's rain and snow Pseudomonas survive in nuclear reactor Pseudomonas genome database Pseudomonas ... Pseudomonas phage Φ6 Pseudomonas phage ΦCTX Pseudomonas aeruginosa phage EL Pseudomonas aeruginosa phage ΦKMV (a Phikmvvirus) ... "The Ever-Expanding Pseudomonas Genus: Description of 43 New Species and Partition of the Pseudomonas putida Group". ...
Chohnan S, Akagi K, Takamura Y (January 2003). "Functions of malonate decarboxylase subunits from Pseudomonas putida". ...
The sequence of the enzyme has been obtained from bacteria Pseudomonas putida M10 and has been successfully expressed in yeast ... "morB - Morphinone reductase - Pseudomonas putida - morB gene & protein". www.uniprot.org. Galanie, Stephanie; Thodey, Kate; ... The catalysis is part of the degradation pathway of morphine and codeine in Pseudomonas putida M10: morphine dehydrogenase and ... French, C E; Bruce, N C (1 July 1994). "Purification and characterization of morphinone reductase from Pseudomonas putida M10 ...
Donnelly MI, Dagley S (1980). "Production of methanol from aromatic acids by Pseudomonas putida". J. Bacteriol. 142 (3): 916-24 ...
Espinosa-Urgel, Manuel; Kolter, Roberto; Ramos, Juan-Luis (February 2002). "Root colonization by Pseudomonas putida: love at ... O'Toole, G. A.; Kolter, R. (October 1998). "Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm ... Sakuragi, Yumiko; Kolter, Roberto (July 2007). "Quorum-sensing regulation of the biofilm matrix genes (pel) of Pseudomonas ... O'Toole, GA; Kolter, R (1998). "Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, ...
Hu L, Mulfinger LM, Phillips AT (1987). "Purification and properties of formylglutamate amidohydrolase from Pseudomonas putida ...
published the genome annotation of a strain of Pseudomonas putida (CSV86), a bacterium known for its preference of naphthalene ... "Genome Sequence of Naphthalene-Degrading Soil Bacterium Pseudomonas putida CSV86". Genome Announcements. 1 (1): 234-235. doi: ... "Insights into functional and evolutionary analysis of carbaryl metabolic pathway from Pseudomonas sp. strain C5pp". Scientific ...
Ornston LN (August 1966). "The conversion of catechol and protocatechuate to β-ketoadipate by Pseudomonas putida. II. Enzymes ... Ornston LN (1970). "Conversion of catechol and protocatechuate to β-ketoadipate (Pseudomonas putida)". Methods Enzymol. 17A: ...
... she analyzed the surface properties and physical morphology of Pseudomonas putida biofilms and investigated how biofilm ... "Physical Morphology and Surface Properties of Unsaturated Pseudomonas putida Biofilms". Journal of Bacteriology. 182 (13): 3809 ... "Elongation Correlates with Nutrient Deprivation in Pseudomonas aeruginosa-Unsaturated Biofilms". Microbial Ecology. 43 (4): 416 ...
Ornston LN (August 1966). "The conversion of catechol and protocatechuate to beta-ketoadipate by Pseudomonas putida. 3. Enzymes ... Ornston LN (1970). "Conversion of catechol and protocatechuate to beta-ketoadipate (Pseudomonas putida)". Methods Enzymol. 17A ...
It can be found in Pseudomonas putida and Pseudomonas fluorescens. The enzyme 4-hydroxybenzoate 3-monooxygenase (NAD(P)H) ... This enzyme participates in 2,4-dichlorobenzoate degradation in Pseudomonas putida. The enzyme 4-hydroxybenzaldehyde ... This enzyme participates in toluene and xylene degradation in bacteria such as Pseudomonas mendocina. It is also found in ... It can be found in Pseudomonas species. The enzyme 4-hydroxybenzoyl-CoA thioesterase utilizes 4-hydroxybenzoyl-CoA and H2O to ...
Pseudomonas putida CR30RNSLL(pADPTel). Pseudomonas putida is an example for plant growth promoting Rhizobacterium, which ... Thus, use of P. putida in many research labs is preferable to some other Pseudomonas species, such as Pseudomonas aeruginosa, ... Phylogenomic analysis reclassified the strain KT2440 in a new species Pseudomonas alloputida. Pseudomonas putidas amenability ... nov., Pseudomonas inefficax sp. nov., Pseudomonas persica sp. nov., and Pseudomonas shirazica sp. nov". Systematic and Applied ...
Background: Pseudomonas putida is a promising host for the bioproduction of chemicals, but its industrial applications are ... The aim of this work is to empower the anoxic metabolism of Pseudomonas putida to enable bioproduction anaerobically, with the ... Electrofermentation As a Tool to Balance Redox in Engineered Pseudomonas Putida. Conference ... Anoxic metabolism and biochemical production in Pseudomonas putida F1 driven by a bioelectrochemical system. Biotechnol ...
Timeline for Species Pseudomonas putida [TaxId:303] from a.127.1.2 Histidine ammonia-lyase (HAL): *Species Pseudomonas putida [ ... Species Pseudomonas putida [TaxId:303] from a.127.1.2 Histidine ammonia-lyase (HAL) appears in SCOP 1.73. *Species Pseudomonas ... PDB entries in Species: Pseudomonas putida [TaxId: 303]:. *Domain(s) for 1b8f: *. Domain d1b8fa_: 1b8f A: [19434]. complexed ... Species Pseudomonas putida [TaxId:303] from a.127.1.2 Histidine ammonia-lyase (HAL) appears in the current release, SCOPe 2.08 ...
Timeline for Species Pseudomonas putida [TaxId:303] from c.1.9.15 Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699: * ... PDB entry in Species: Pseudomonas putida [TaxId: 303]:. *Domain(s) for 2ffi: *. Domain d2ffia1: 2ffi A:10-280 [133385]. ... Lineage for Species: Pseudomonas putida [TaxId: 303]. *Root: SCOP 1.73 *. Class c: Alpha and beta proteins (a/b) [51349] (141 ... Species Pseudomonas putida [TaxId:303] from c.1.9.15 Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 is new in SCOP ...
Pseudomonas putida KT2440). Find diseases associated with this biological target and compounds tested against it in bioassay ...
Pseudomonas Ortholog Database. View orthologs at Pseudomonas Ortholog Database Pseudomonas Ortholog Group. POG005031 (551 ... Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database. ... If you have used this database, please ensure that you acknowledge this most recent Pseudomonas Genome Database publication ... Pseudomonas putida BIRD-1, PPUBIRD1_0152 (engB) .list-group { margin-bottom: 5px; width: 150px; text-align: left; } Cytoplasmic ...
Pseudomonas Ortholog Database. View orthologs at Pseudomonas Ortholog Database Pseudomonas Ortholog Group. POG016374 (100 ... Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database. ... If you have used this database, please ensure that you acknowledge this most recent Pseudomonas Genome Database publication ...
putida in Europe (3). VIM-1 in P. putida was first reported in Europe (4), and VIM-2 in P. putida was first reported in Taiwan ... producing Pseudomonas aeruginosa and Pseudomonas putida isolated disseminated in a Korean hospital. Antimicrob Agents Chemother ... Presence of Pseudomonas putida strains harboring plasmids bearing the metallo-β-lactamase gene bla IMP in a hospital in Japan. ... VIM-2-producing Pseudomonas putida, Buenos Aires. Emerging Infectious Diseases. 2007;13(4):668. doi:10.3201/eid1304.061083.. ...
P4SB - From Plastic waste to Plastic value using Pseudomonas putida Synthetic Biology. ...
Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics ... Pseudomonas putida KT2440. Mutation(s): 7 Gene Names: allA, PP_4288. EC: 3.5.3.19 (PDB Primary Data), 4.3.2.3 (UniProt). ... Find proteins for P59285 (Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)) ... Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics ...
Pseudomonas putida UW4 is a rhizospheric plant-growth-promoting bacterium that has the ability to produce IAA. The sequencing ... We sought to better understand the IAA biosynthesis pathways operating in Pseudomonas putida UW4 by isolating, purifying and ... Characterizing the Indole-3-Acetic Acid Biosynthesis Pathways in Pseudomonas putida UW4. ... Daiana Duca (2013). Characterizing the Indole-3-Acetic Acid Biosynthesis Pathways in Pseudomonas putida UW4. UWSpace. http:// ...
For this purpose, the non-pathogenic production host P. putida KT2440 containing the rhlAB genes with the native P. aeruginosa ... hosts as well as uncoupling from complex quorum sensing regulatory networks compared to their natural producer Pseudomonas ... Electro competent Pseudomonas putida KT2440 wt were prepared according to Choi et al. (2006). The solution containing the PCR ... Pseudomonas putida KT2440 with plasmid pSynPro8oT_rhlAB producing mono-rhamnolipids was used as described previously (Beuker et ...
Pseudomonas putida KT217 was grown on a complex medium comprised of co-products of the ethanol and biodiesel industries to ... Pseudomonas putida KT217 was grown on a complex medium comprised of co-products of the ethanol and biodiesel ... Figure 1. Growth and PHA production of P. putida KT217 on a CCS medium with fed-batch glycerol addition. Average of ... Figure 2. Glycerol utilization rate for P. putida KT217 grown on a CCS medium with fed-batch glycerol addition. ...
... re-vealed sixteen groups of Pseudomonas and justified the partitioning of the P. putida group into fifteen subgroups. Pairwise ... Type strains of Pseudomonas are well-known to represent only a small fraction of this diversity and the number of available ... Consequently, new Pseudomonas species are regularly reported and the number of species within the genus is in constant ... In this study, whole genome se-quencing enabled us to define 43 new Pseudomonas species and to provide an update of the Pseu- ...
We performed a random mutagenesis screen of the unique IutY protein of Pseudomonas putida, a protein that combines a cytosolic ... We performed a random mutagenesis screen of the unique IutY protein of Pseudomonas putida, a protein that combines a cytosolic ... We performed a random mutagenesis screen of the unique IutY protein of Pseudomonas putida, a protein that combines a cytosolic ... We performed a random mutagenesis screen of the unique IutY protein of Pseudomonas putida, a protein that combines a cytosolic ...
Physical map of the DNA of bacteriophage tf of Pseudomonas putida. In: Mol Gen Mikrobiol Virusol. 1988 ; Vol. 6. pp. 12. ... Physical map of the DNA of bacteriophage tf of Pseudomonas putida. Leonid Kulakov, VV Kochetkov, VN Ksenzenko, VN Krylov, AM ... 1988). Physical map of the DNA of bacteriophage tf of Pseudomonas putida. Mol Gen Mikrobiol Virusol, 6, 12. ... Physical map of the DNA of bacteriophage tf of Pseudomonas putida. / Kulakov, Leonid; Kochetkov, VV; Ksenzenko, VN et al. ...
The purpose of this research is to determine whether a plant-associated strain o Pseudomonas putida has the ability to produce ... My findings indicate that Pseudomonas putida does produce cyanide under biofilm conditions providing valuable information ... The genus Pseudomonas is a group of gram-negative bacteria having great ecological diversity. Some species produce HCN which ... concerning cyanogenic bacteria especially in the Pseudomonas group. ...
Protein PP_4011 in Pseudomonas putida KT2440. Annotation: FitnessBrowser__Putida:PP_4011 ... Source: Putida in FitnessBrowser. Candidate for 3 steps in Amino acid biosynthesis. Pathway. Step. Score. Similar to. Id.. Cov. ... Pseudomonas putida KT2440 (Putida) at FitnessBrowser. *Potential gaps in Pseudomonas putida KT2440 ...
Protein PP_3602 in Pseudomonas putida KT2440. Annotation: FitnessBrowser__Putida:PP_3602 ... Source: Putida in FitnessBrowser. Candidate for 4 steps in catabolism of small carbon sources. Pathway. Step. Score. Similar to ... Pseudomonas putida KT2440 (Putida) at FitnessBrowser. *Potential gaps in Pseudomonas putida KT2440 ...
Funciton: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy ...
Stress-induced transposition of Tn4652 in Pseudomonas ...
Three different bactericides were evaluated in vitro against Pseudomonas putida. Among the three, Bactinash at 0.1% was most ... The pathogen responsible for the disease was isolated and identified as Pseudomonas putida based biochemical and molecular ... ISOLATION AND IDENTIFICATION OF PSEUDOMONAS PUTIDA FROM BACTERIAL LEAF BLIGHT DISEASE OF CHRYSANTHEMUM AND ITS MANAGEMENT USING ... this is the first report of the occurrence of bacterial blight disease of Chrysanthemum caused by Pseudomonas putida in ...
The fluorescent Pseudomonas sp. viz., Pseudomonas putida L, Pseudomonas fluorescens M and Pseudomonas aeruginosaC were grown in ... Home Vol 11 Issue 2 Comparative Effect of Pseudomonas aeruginosa, Pseudomonas fluorescens and Pseudomonas putida on the... ... Field application of Pseudomonas putida L, Pseudomonas fluorescensM and Pseudomonas aeruginosaCin replant sites of Maggota and ... Comparative Effect of Pseudomonas aeruginosa, Pseudomonas fluorescens and Pseudomonas putida on the Growth of Replanted Apple. ...
Afegbua, S. L., & Batty, L. C. (2019). Effect of plant growth promoting bacterium; Pseudomonas putida UW4 inoculation on ... Afegbua, SL & Batty, LC 2019, Effect of plant growth promoting bacterium; Pseudomonas putida UW4 inoculation on ... Dive into the research topics of Effect of plant growth promoting bacterium; Pseudomonas putida UW4 inoculation on ... Effect of plant growth promoting bacterium; Pseudomonas putida UW4 inoculation on phytoremediation efficacy of monoculture and ...
Interspecies cross-talk between co-cultured Pseudomonas putida and Escherichia coli. Environ Microbiol Rep. 2017 08; 9(4):441- ...
Dong, F., Quevedo, A. C., Wang, X., Valsami-Jones, E., & Kreft, J-U. (2022). Experimental evolution of Pseudomonas putida under ... Dong, F, Quevedo, AC, Wang, X, Valsami-Jones, E & Kreft, J-U 2022, Experimental evolution of Pseudomonas putida under silver ... Experimental evolution of Pseudomonas putida under silver ion versus nanoparticle stress. Feng Dong, Ana C Quevedo, Xiang Wang ... Experimental evolution of Pseudomonas putida under silver ion versus nanoparticle stress. / Dong, Feng; Quevedo, Ana C; Wang, ...
Role of Tyrosine 114 of L-Methionine γ-lyase from Pseudomonas putida. / Inoue, Hiroyuki; Inagaki, Kenji; Adachi, Naoki et al. ... N2 - L-Methionine γ-lyase from Pseudomonas putida has a conserved tyrosine residue (Tyr114) in the active site as in all known ... AB - L-Methionine γ-lyase from Pseudomonas putida has a conserved tyrosine residue (Tyr114) in the active site as in all known ... Dive into the research topics of Role of Tyrosine 114 of L-Methionine γ-lyase from Pseudomonas putida. Together they form a ...
... starting with the prominent chassis strain Pseudomonas putida. P. putida KT2440 has a versatile metabolism and high resistance ... starting with the prominent chassis strain Pseudomonas putida. P. putida KT2440 has a versatile metabolism and high resistance ... Development of synthetic biology tools for Pseudomonas putida. *Entwicklung von Werkzeugen der synthetischen Biologie für ... This thesis aimed to increase the number of rationally designed and well-characterized genetic tools for P. putida KT2440 to ...
Pseudomonas putida protein. Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB ... Pseudomonas xanthomarina DSM 18231 protein. Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB ... Pseudomonas sp. NFACC16-2 protein. Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB ... Pseudomonas alcaliphila protein. Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB ...
Pseudomonas putida strain KT2440 is a versatile biosafety strain known for good expression of heterologous genes, so we have ... Pseudomonas putida strain KT2440 is a versatile biosafety strain known for good expression of heterologous genes, so we have ... Efficient production of soluble recombinant single chain Fv fragments by a Pseudomonas putida strain KT2440 cell factory.. en. ... Efficient production of soluble recombinant single chain Fv fragments by a Pseudomonas putida strain KT2440 cell factory.. ...
  • The Food and Drug Administration (FDA) has listed P. putida strain KT2440 as Host-vector system safety level 1 certified (HV-1), indicating that it is safe to use without any extra precautions. (wikipedia.org)
  • The P. putida KT2440 chromosome is characterized by strand symmetry and intrastrand parity of complementary oligonucleotides. (wikipedia.org)
  • Phylogenomic analysis reclassified the strain KT2440 in a new species Pseudomonas alloputida. (wikipedia.org)
  • For this purpose, the non-pathogenic production host P. putida KT2440 containing the rhlAB genes with the native P. aeruginosa 5′-UTR region was used. (springer.com)
  • P. putida KT2440 has a versatile metabolism and high resistance towards oxidative stress. (rwth-aachen.de)
  • This thesis aimed to increase the number of rationally designed and well-characterized genetic tools for P. putida KT2440 to foster synthetic biology. (rwth-aachen.de)
  • Stable genomic integration is often used for metabolic engineering, but characterized sites, so-called landing pads, across the genome of P. putida KT2440 are missing. (rwth-aachen.de)
  • We analyzed RNA-Seq data towards regions that are equally expressed to identify suitable integration sites across the genome of P. putida KT2440. (rwth-aachen.de)
  • In summary, this thesis contributes to P. putida KT2440 synthetic biology. (rwth-aachen.de)
  • Getting the tough challenges, like the use of aromatic compounds from plastic or lignin as substrates, will distinguish P. putida KT2440 from the well-established microbes. (rwth-aachen.de)
  • Efficient production of soluble recombinant single chain Fv fragments by a Pseudomonas putida strain KT2440 cell factory. (helmholtz-hzi.de)
  • Pseudomonas putida strain KT2440 is a versatile biosafety strain known for good expression of heterologous genes, so we have explored its utility as a cell factory for production of scFvs. (helmholtz-hzi.de)
  • A promoter engineering-based strategy enhances polyhydroxyalkanoate production in Pseudomonas putida KT2440. (helmholtz-hzi.de)
  • Southern hybridization experiments and analysis of the P. putida KT2440 genome sequence indicated that sepR is a relatively rare commodity compared to homologues of the sepABC genes. (canada.ca)
  • Pseudomonas putida KT2440 je bezpečná, robustní, původem půdní bakterie, nejdůkladněji prozkoumaná pseudomonáda známá vysokou odolností ke stresům. (muni.cz)
  • V navrhovaném projektu využijeme nejnovější nástroje a postupy metabolického inženýrství a syntetické biologie pro bezprecedentní přestavbu katabolismu sacharidů v kmeni P. putida EM42, což je P. putida KT2440 s redukovaným genomem a lepšími fyziologickými vlastnostmi. (muni.cz)
  • Thus, use of P. putida in many research labs is preferable to some other Pseudomonas species, such as Pseudomonas aeruginosa, for example, which is an opportunistic pathogen. (wikipedia.org)
  • Aztreonam resistance could not be transferred by conjugation between IMP-1-producing (aztreonam-resistant) P . putida and P . aeruginosa ( 2 ) and is not associated with a transposon carrying blaVIM-2 ( 6 ). (cdc.gov)
  • Today, mainly heterologous production systems are targeted due to the advantage of non-pathogenic hosts as well as uncoupling from complex quorum sensing regulatory networks compared to their natural producer Pseudomonas aeruginosa . (springer.com)
  • Home Vol 11 Issue 2 Comparative Effect of Pseudomonas aeruginosa, Pseudomonas fluorescens and Pseudomonas putida on the. (microbiologyjournal.org)
  • Pseudomonas aeruginosa C , Pseudomonas fluorescens M and Pseudomonas putida L were selected for field studies. (microbiologyjournal.org)
  • P. aeruginosa , P. fluorescens and P. putida in individual and consortial combination to act as biofertilizer which can become one of the most promising biotechnologies to solve apple replant disease and can also improve production with low inputs in fertilizer. (microbiologyjournal.org)
  • All the twelve isolates from apple rhizosphere were morphologically, physiologically and biochemically characterized so as to select the isolates belonging to P. aeruginosa, P. putida and P. fluorescens group. (microbiologyjournal.org)
  • Pseudomonas aeruginosa and other members of this group of gram-negative bacilli are opportunistic pathogens that frequently cause hospital-acquired infections, particularly in ventilator patients, burn patients, and patients with neutropenia or chronic debility. (msdmanuals.com)
  • In humans, P. aeruginosa is the most common pathogen, but infection may result from P. paucimobilis , P. putida , P. fluorescens , or P. acidovorans . (msdmanuals.com)
  • Here, synthetic biology is used for the tailoring of hyperproducing strains, starting with the prominent chassis strain Pseudomonas putida. (rwth-aachen.de)
  • In this study, we tested how a gradient of spatial habitat complexity in the form of fractal mazes influenced the growth, substrate degradation, and interactions of the bacterial strain Pseudomonas putida and the fungal strain Coprinopsis cinerea. (lu.se)
  • We used experimental evolution of the model environmental bacterium Pseudomonas putida to ask whether bacteria respond differently to Ag + or AgNP treatment. (birmingham.ac.uk)
  • In the absence of this treatment, bioassays with the bacterium Pseudomonas putida (ATCC11250) showed decreasing specific growth rates μ (used here to quantify 2,4-DCP toxicity) with increasing concentrations of 2,4-DCP. (njit.edu)
  • Bio-agents such as Hypocrea rufa (Trichoderma viride) and Pseudomonas fluorescens were also found effective in inhibiting the bacterial pathogen both in vitro and in vivo. (ijpcbs.com)
  • A species-specific extragenic palindromic sequence is the most common repeat in the genome that can be exploited for the typing of P. putida strains. (wikipedia.org)
  • Type strains of Pseudomonas are well-known to represent only a small fraction of this diversity and the number of available Pseudomonas genome sequences is increasing rapidly. (preprints.org)
  • Phylogenies based on the rpoD gene and whole genome sequences, including 316 and 313 type strains of Pseudomonas, respectively, re-vealed sixteen groups of Pseudomonas and justified the partitioning of the P. putida group into fifteen subgroups. (preprints.org)
  • Pairwise average nucleotide identities were calculated between type strains and a selection of 60 genomes of non-type strains of Pseudomonas. (preprints.org)
  • Forty-one strains were incor-rectly assigned at the species level and among those, 19 strains were shown to represent an addi-tional 13 new Pseudomonas species that remain to be formally classified. (preprints.org)
  • The main objective of this research was to exploit the indigenous potential fluorescent Pseudomonas strains viz. (microbiologyjournal.org)
  • Based on 16S rRNA analysis, P. putida was taxonomically confirmed to be a Pseudomonas species (sensu stricto) and placed, along with several other species, in the P. putida group, to which it lends its name. (wikipedia.org)
  • Consequently, new Pseudomonas species are regularly reported and the number of species within the genus is in constant evolution. (preprints.org)
  • In this study, whole genome se-quencing enabled us to define 43 new Pseudomonas species and to provide an update of the Pseu-domonas evolutionary and taxonomic relationships. (preprints.org)
  • Fluorescent Pseudomonas species have a number of traits like antifungal, siderophores, phosphatesolubilization, lytic enzymes, HCN, ammonia and plant growth regulators that allow them to act as plant growth promoting and biocontrol agents. (microbiologyjournal.org)
  • Fluorescent Pseudomonas species are the most diverse and versatile group of plant growth promoting rhizobacteria. (microbiologyjournal.org)
  • P. putida ATH-43 genome now forms part of the 65 genomes of this species registered at the NCBI database (September, 2016) and it is highly related with the endophytic strain P. putida W619, which is also resistant to several heavy metals. (unab.cl)
  • The genus Pseudomonas hosts an extensive genetic diversity and is one of the largest genera among Gram-negative bacteria. (preprints.org)
  • The genus Pseudomonas is a group of gram-negative bacteria having great ecological diversity. (andrews.edu)
  • My findings indicate that Pseudomonas putida does produce cyanide under biofilm conditions providing valuable information concerning cyanogenic bacteria especially in the Pseudomonas group. (andrews.edu)
  • Further characterization of multi-metal resistant psychrotrophic bacteria such as P. putida ATH-43 will be promising to develop novel strategies for heavy metal bioremediation in low temperature environments. (unab.cl)
  • DEA, to the bacteria Pseudomonas putida according to DIN Guideline 38412 L8, in compliance with GLP. (europa.eu)
  • The aim of this work is to empower the anoxic metabolism of Pseudomonas putida to enable bioproduction anaerobically, with the redox power from a bioelectrochemical system (BES). (aiche.org)
  • Interspecies cross-talk between co-cultured Pseudomonas putida and Escherichia coli. (uams.edu)
  • To the best of our knowledge, this is the first report of the occurrence of bacterial blight disease of Chrysanthemum caused by Pseudomonas putida in Karnataka, India. (ijpcbs.com)
  • Pseudomonas putida has demonstrated potential biocontrol properties, as an effective antagonist of plant pathogens such as Pythium aphanidermatum and Fusarium oxysporum f.sp. (wikipedia.org)
  • The protein count and GC content of the (63) genomes that belong to the P. putida wider evolutionary group (as defined by a phylogenomic analysis of 494 complete genomes from the entire Pseudomonas genus) ranges between 3748-6780 (average: 5197) and between 58.7-64.4% (average: 62.3%), respectively. (wikipedia.org)
  • The core proteome of the analyzed 63 genomes (of the P. putida group) comprised 1724 proteins, of which only 1 core protein was specific for this group, meaning that it was absent in all other analyzed Pseudomonads. (wikipedia.org)
  • Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database. (pseudomonas.com)
  • Pseudomonas putida's amenability to genetic manipulation has allowed it to be used in the synthesis of numerous organic pharmaceutical and agricultural compounds from various substrates. (wikipedia.org)
  • Upgrading Pseudomonas putida by synthetic biology for biotechnological processing of lignocellulosic substrates. (muni.cz)
  • The pathogen responsible for the disease was isolated and identified as Pseudomonas putida based biochemical and molecular methods. (ijpcbs.com)
  • The serial dilution agar plate method was used to isolate Pseudomonas sp. (microbiologyjournal.org)
  • Characterization of a novel blaIMP gene, blaIMP-58, using whole genome sequencing in a Pseudomonas putida isolate detected in Denmark. (cdc.gov)
  • In this report we present the first draft genome sequence of a P. putida strain isolated from the Antarctic continent. (unab.cl)
  • An R-prime, pUU2, derived from the broad host-range plasmid R68.44+ was generated carrying the dehalogenase I gene from Pseudomonas putida PP3. (warwick.ac.uk)
  • A new gene cluster, designated sepABC and a divergently transcribed sepR, was found downstream of the two-component todST phosphorelay system that regulates toluene degradation (the tod pathway) in Pseudomonas putida F1 (PpF1). (canada.ca)
  • The bacterium P. putida is being engineered for the conversion of lignin-derived monomers into key chemicals, such as bioplastic or Nylon precursors. (lu.se)
  • For example, we have developed a modified P. putida strain that can convert Kraft-lignin derived guaiacol into muconic acid, a precursor for Nylon 66 ( https://pubs.acs.org/doi/full/10.1021/acssuschemeng.1c00933 ). (lu.se)
  • Pseudomonas putida UW4 is a rhizospheric plant-growth-promoting bacterium that has the ability to produce IAA. (uwaterloo.ca)
  • The large scale application of indigenous plant growth promoting fluorescent Pseudomonas sp. (microbiologyjournal.org)
  • Pseudomonas putida colonies, in triplicate, were exposed to the test substance (directly diluted in test medium) at nominal concentrations of 0.01, 0.05, 0.10, 0.50, 1.00, 2.50, 5.00 and 10.00 g/L. Inhibition of cell growth compared to controls was recorded after 16 h. (europa.eu)
  • A variety of P. putida, called multiplasmid hydrocarbon-degrading Pseudomonas, is the first patented organism in the world. (wikipedia.org)
  • P. putida was able to survive and produce almost exclusively 2‑Keto-gluconate from glucose under anoxic conditions due to redox balancing with electron mediators in a BES. (aiche.org)
  • The present study portrays the synthesis of mcl PHAs from Pseudomonas putida using glucose as the sole carbon source. (envirobiotechjournals.com)
  • P. putida cells survived under anaerobic conditions and limited biofilm formation could be observed on the anode surface. (aiche.org)
  • However, carbapenem-susceptible P . putida had low levels of susceptibility because the MIC 50 was only 1 dilution below the current breakpoint ( 7 , 8 ). (cdc.gov)
  • This work pinpoints the importance of correct taxonomic assignment and phylogenetic classification in order to perform integrative studies linking genetic diversity, lifestyle and metabolic potential of Pseudomonas spp. (preprints.org)
  • Production and characterization of a recombinant single-chain antibody (scFv) for tracing the σ54 factor of Pseudomonas putida. (helmholtz-hzi.de)
  • We performed a random mutagenesis screen of the unique IutY protein of Pseudomonas putida, a protein that combines a cytosolic σECF domain and a periplasmic anti-sigma factor domain in a single polypeptide. (vu.nl)
  • L-Methionine γ-lyase from Pseudomonas putida has a conserved tyrosine residue (Tyr114) in the active site as in all known sequences of γ-family pyridoxal 5′-phosphate dependent enzymes. (elsevierpure.com)
  • Pseudomonas putida is a promising host for the bioproduction of chemicals, but its industrial applications are significantly limited by its obligate aerobic character. (aiche.org)
  • Pseudomonas putida CBB5, a nonengineered, wild-type variety found in soil, can live on caffeine and has been observed to break caffeine down into carbon dioxide and ammonia. (wikipedia.org)
  • The purpose of this research is to determine whether a plant-associated strain o Pseudomonas putida has the ability to produce cyanide under biofilm conditions. (andrews.edu)
  • The aim of the study was to select more effective combination of fluorescent Pseudomonas sp. (microbiologyjournal.org)
  • If you have used this database, please ensure that you acknowledge this most recent Pseudomonas Genome Database publication rather than just the website URL. (pseudomonas.com)