Multigene Family
Molecular Sequence Data
Base Sequence
Amino Acid Sequence
Cloning, Molecular
Pseudogenes
Genes
Evolution, Molecular
Sequence Homology, Nucleic Acid
Proline-Rich Protein Domains
Sequence Homology, Amino Acid
Gene Conversion
Nucleic Acid Hybridization
Biological Evolution
DNA
Blotting, Southern
Sequence Alignment
Chromosome Mapping
Plant Proteins
DNA, Complementary
Babesia bovis
Sequence Analysis, DNA
RNA, Transfer, Gly
RNA, Messenger
Transcription, Genetic
Salivary Proline-Rich Proteins
DNA Restriction Enzymes
Species Specificity
Anaplasma
Gene Duplication
Plants
beta-Keratins
Bombyx
Repetitive Sequences, Nucleic Acid
Introns
Restriction Mapping
Salivary Proteins and Peptides
Receptors, Odorant
Antigenic Variation
Gene Expression Regulation, Plant
Models, Genetic
African Swine Fever Virus
Polymerase Chain Reaction
Schizonts
Gene Expression Regulation
Arabidopsis
Gene Library
Genetic Linkage
DNA Primers
Blotting, Northern
Trophozoites
Gene Expression
Chorion
Selection, Genetic
Conserved Sequence
Polymorphism, Genetic
Exons
Oligonucleotide Probes
Ehrlichia chaffeensis
Viperidae
Plants, Genetically Modified
DNA, Recombinant
Consensus Sequence
Mutation
Plasmids
Organ Specificity
Sequence Homology
RNA, Plant
Karyotype
Antigens, Protozoan
Vertebrates
Oryza sativa
Chromosomes
Chickens
Ehrlichiosis
Chordata, Nonvertebrate
Genomic Library
Genes, Duplicate
Expressed Sequence Tags
Brassica
RNA, Ribosomal, 5S
Arabidopsis Proteins
Triticum
RNA
Cosmids
Vomeronasal Organ
Zea mays
Isoenzymes
Plant Roots
Cotyledon
RNA, Small Nuclear
Reverse Transcriptase Polymerase Chain Reaction
Tissue Distribution
Ribulose-Bisphosphate Carboxylase
Polydnaviridae
Alleles
Fabaceae
Bryopsida
Membrane Proteins
Drosophila
Annexins
Gene Expression Profiling
Genome
Promoter Regions, Genetic
Gene Dosage
Recombination, Genetic
Claudins
Fishes
Open Reading Frames
Gene Expression Regulation, Enzymologic
DNA, Ribosomal
Drosophila melanogaster
Gene Expression Regulation, Developmental
Major Histocompatibility Complex
Protein Structure, Tertiary
Soybeans
Transcription Factors
Plants, Medicinal
Lyases
Lycopersicon esculentum
Seeds
Protein Isoforms
Protein Biosynthesis
Crossing Over, Genetic
Glutathione Transferase
High Mobility Group Proteins
Phenotype
Intermediate Filament Proteins
alpha-Amylases
Protein Sorting Signals
Mammals
Electrophoresis, Agar Gel
Charophyceae
Mycoplasma
Tubulin
Bacterial Outer Membrane Proteins
Plant Leaves
In Situ Hybridization
Plasmodium falciparum
Heat-Shock Proteins
Isoelectric Point
Immunoglobulin Variable Region
Solanum tuberosum
Gene Deletion
Polymorphism, Restriction Fragment Length
Chromosomes, Human, Pair 1
Poly A
Drosophila Proteins
Saccharomyces cerevisiae
Hybrid Cells
Trypanosoma cruzi
Proteins
Escherichia coli
Tobacco
Plant Growth Regulators
Host-Parasite Interactions
DNA-Binding Proteins
Sequence Analysis
Peptides
DNA Probes
Regulatory Sequences, Nucleic Acid
Liver
Single-Strand Specific DNA and RNA Endonucleases
DNA Transposable Elements
Gene Amplification
Ethylenes
Recombinant Fusion Proteins
The cardiac homeobox gene Csx/Nkx2.5 lies genetically upstream of multiple genes essential for heart development. (1/13607)
Csx/Nkx2.5 is a vertebrate homeobox gene with a sequence homology to the Drosophila tinman, which is required for the dorsal mesoderm specification. Recently, heterozygous mutations of this gene were found to cause human congenital heart disease (Schott, J.-J., Benson, D. W., Basson, C. T., Pease, W., Silberbach, G. M., Moak, J. P., Maron, B. J., Seidman, C. E. and Seidman, J. G. (1998) Science 281, 108-111). To investigate the functions of Csx/Nkx2.5 in cardiac and extracardiac development in the vertebrate, we have generated and analyzed mutant mice completely null for Csx/Nkx2.5. Homozygous null embryos showed arrest of cardiac development after looping and poor development of blood vessels. Moreover, there were severe defects in vascular formation and hematopoiesis in the mutant yolk sac. Interestingly, TUNEL staining and PCNA staining showed neither enhanced apoptosis nor reduced cell proliferation in the mutant myocardium. In situ hybridization studies demonstrated that, among 20 candidate genes examined, expression of ANF, BNP, MLC2V, N-myc, MEF2C, HAND1 and Msx2 was disturbed in the mutant heart. Moreover, in the heart of adult chimeric mice generated from Csx/Nkx2.5 null ES cells, there were almost no ES cell-derived cardiac myocytes, while there were substantial contributions of Csx /Nkx2.5-deficient cells in other organs. Whole-mount &bgr;-gal staining of chimeric embryos showed that more than 20% contribution of Csx/Nkx2. 5-deficient cells in the heart arrested cardiac development. These results indicate that (1) the complete null mutation of Csx/Nkx2.5 did not abolish initial heart looping, (2) there was no enhanced apoptosis or defective cell cycle entry in Csx/Nkx2.5 null cardiac myocytes, (3) Csx/Nkx2.5 regulates expression of several essential transcription factors in the developing heart, (4) Csx/Nkx2.5 is required for later differentiation of cardiac myocytes, (5) Csx/Nkx2. 5 null cells exert dominant interfering effects on cardiac development, and (6) there were severe defects in yolk sac angiogenesis and hematopoiesis in the Csx/Nkx2.5 null embryos. (+info)Characterization of an amphioxus paired box gene, AmphiPax2/5/8: developmental expression patterns in optic support cells, nephridium, thyroid-like structures and pharyngeal gill slits, but not in the midbrain-hindbrain boundary region. (2/13607)
On the basis of developmental gene expression, the vertebrate central nervous system comprises: a forebrain plus anterior midbrain, a midbrain-hindbrain boundary region (MHB) having organizer properties, and a rhombospinal domain. The vertebrate MHB is characterized by position, by organizer properties and by being the early site of action of Wnt1 and engrailed genes, and of genes of the Pax2/5/8 subfamily. Wada and others (Wada, H., Saiga, H., Satoh, N. and Holland, P. W. H. (1998) Development 125, 1113-1122) suggested that ascidian tunicates have a vertebrate-like MHB on the basis of ascidian Pax258 expression there. In another invertebrate chordate, amphioxus, comparable gene expression evidence for a vertebrate-like MHB is lacking. We, therefore, isolated and characterized AmphiPax2/5/8, the sole member of this subfamily in amphioxus. AmphiPax2/5/8 is initially expressed well back in the rhombospinal domain and not where a MHB would be expected. In contrast, most of the other expression domains of AmphiPax2/5/8 correspond to expression domains of vertebrate Pax2, Pax5 and Pax8 in structures that are probably homologous - support cells of the eye, nephridium, thyroid-like structures and pharyngeal gill slits; although AmphiPax2/5/8 is not transcribed in any structures that could be interpreted as homologues of vertebrate otic placodes or otic vesicles. In sum, the developmental expression of AmphiPax2/5/8 indicates that the amphioxus central nervous system lacks a MHB resembling the vertebrate isthmic region. Additional gene expression data for the developing ascidian and amphioxus nervous systems would help determine whether a MHB is a basal chordate character secondarily lost in amphioxus. The alternative is that the MHB is a vertebrate innovation. (+info)Molecular chaperones: small heat shock proteins in the limelight. (3/13607)
Small heat shock proteins have been the Cinderellas of the molecular chaperone world, but now the crystal structure of a small heat shock protein has been solved and mutation of two human homologues implicated in genetic disease. Intermediate filaments appear to be one of the key targets of their chaperone activity. (+info)TIF1gamma, a novel member of the transcriptional intermediary factor 1 family. (4/13607)
We report the cloning and characterization of a novel member of the Transcriptional Intermediary Factor 1 (TIF1) gene family, human TIF1gamma. Similar to TIF1alpha and TIF1beta, the structure of TIF1beta is characterized by multiple domains: RING finger, B boxes, Coiled coil, PHD/TTC, and bromodomain. Although structurally related to TIF1alpha and TIF1beta, TIF1gamma presents several functional differences. In contrast to TIF1alpha, but like TIF1beta, TIF1 does not interact with nuclear receptors in yeast two-hybrid or GST pull-down assays and does not interfere with retinoic acid response in transfected mammalian cells. Whereas TIF1alpha and TIF1beta were previously found to interact with the KRAB silencing domain of KOX1 and with the HP1alpha, MODI (HP1beta) and MOD2 (HP1gamma) heterochromatinic proteins, suggesting that they may participate in a complex involved in heterochromatin-induced gene repression, TIF1gamma does not interact with either the KRAB domain of KOX1 or the HP1 proteins. Nevertheless, TIF1gamma, like TIF1alpha and TIF1beta, exhibits a strong silencing activity when tethered to a promoter. Since deletion of a novel motif unique to the three TIF1 proteins, called TIF1 signature sequence (TSS), abrogates transcriptional repression by TIF1gamma, this motif likely participates in TIF1 dependent repression. (+info)Molecular phylogeny of the ETS gene family. (5/13607)
We have constructed a molecular phylogeny of the ETS gene family. By distance and parsimony analysis of the ETS conserved domains we show that the family containing so far 29 different genes in vertebrates can be divided into 13 groups of genes namely ETS, ER71, GABP, PEA3, ERG, ERF, ELK, DETS4, ELF, ESE, TEL, YAN, SPI. Since the three dimensional structure of the ETS domain has revealed a similarity with the winged-helix-turn-helix proteins, we used two of them (CAP and HSF) to root the tree. This allowed us to show that the family can be divided into five subfamilies: ETS, DETS4, ELF, TEL and SPI. The ETS subfamily comprises the ETS, ER71, GABP, PEA3, ERG, ERF and the ELK groups which appear more related to each other than to any other ETS family members. The fact that some members of these subfamilies were identified in early metazoans such as diploblasts and sponges suggests that the diversification of ETS family genes predates the diversification of metazoans. By the combined analysis of both the ETS and the PNT domains, which are conserved in some members of the family, we showed that the GABP group, and not the ERG group, is the one most closely related to the ETS group. We also observed that the speed of accumulation of mutations in the various genes of the family is highly variable. Noticeably, paralogous members of the ELK group exhibit strikingly different evolutionary speed suggesting that the evolutionary pressure they support is very different. (+info)ETO-2, a new member of the ETO-family of nuclear proteins. (6/13607)
The t(8;21) is associated with 12-15% of acute myelogenous leukemias of the M2 subtype. The translocation results in the fusion of two genes, AML1 (CBFA2) on chromosome 21 and ETO (MTG8) on chromosome 8. AML1 encodes a DNA binding factor; the ETO protein product is less well characterized, but is thought to be a transcription factor. Here we describe the isolation and characterization of ETO-2, a murine cDNA that encodes a new member of the ETO family of proteins. ETO-2 is 75% identical to murine ETO and shares very high sequence identities over four regions of the protein with ETO (domain I-III and zinc-finger). Northern analysis identifies ETO-2 transcripts in many of the murine tissues analysed and in the developing mouse embryo. ETO-2 is also expressed in myeloid and erythroid cell lines. We confirmed the nuclear localization of ETO-2 and demonstrated that domain III and the zinc-finger region are not required for nuclear localization. We further showed that a region within ETO, containing domain II, mediates dimerization among family members. This region is conserved in the oncoprotein AML-1/ETO. The recent identification of another ETO-like protein, myeloid translocation gene-related protein 1, together with the data presented here, demonstrates that at least three ETO proteins exist with the potential to form dimers in the cell nucleus. (+info)Isolation of zebrafish gdf7 and comparative genetic mapping of genes belonging to the growth/differentiation factor 5, 6, 7 subgroup of the TGF-beta superfamily. (7/13607)
The Growth/differentiation factor (Gdf) 5, 6, 7 genes form a closely related subgroup belonging to the TGF-beta superfamily. In zebrafish, there are three genes that belong to the Gdf5, 6, 7 subgroup that have been named radar, dynamo, and contact. The genes radar and dynamo both encode proteins most similar to mouse GDF6. The orthologous identity of these genes on the basis of amino acid similarities has not been clear. We have identified gdf7, a fourth zebrafish gene belonging to the Gdf5, 6, 7 subgroup. To assign correct orthologies and to investigate the evolutionary relationships of the human, mouse, and zebrafish Gdf5, 6, 7 subgroup, we have compared genetic map positions of the zebrafish and mammalian genes. We have mapped zebrafish gdf7 to linkage group (LG) 17, contact to LG9, GDF6 to human chromosome (Hsa) 8 and GDF7 to Hsa2p. The radar and dynamo genes have been localized previously to LG16 and LG19, respectively. A comparison of syntenies shared among human, mouse, and zebrafish genomes indicates that gdf7 is the ortholog of mammalian GDF7/Gdf7. LG16 shares syntenic relationships with mouse chromosome (Mmu) 4, including Gdf6. Portions of LG16 and LG19 appear to be duplicate chromosomes, thus suggesting that radar and dynamo are both orthologs of Gdf6. Finally, the mapping data is consistent with contact being the zebrafish ortholog of mammalian GDF5/Gdf5. (+info)Analysis of two cosmid clones from chromosome 4 of Drosophila melanogaster reveals two new genes amid an unusual arrangement of repeated sequences. (8/13607)
Chromosome 4 from Drosophila melanogaster has several unusual features that distinguish it from the other chromosomes. These include a diffuse appearance in salivary gland polytene chromosomes, an absence of recombination, and the variegated expression of P-element transgenes. As part of a larger project to understand these properties, we are assembling a physical map of this chromosome. Here we report the sequence of two cosmids representing approximately 5% of the polytenized region. Both cosmid clones contain numerous repeated DNA sequences, as identified by cross hybridization with labeled genomic DNA, BLAST searches, and dot matrix analysis, which are positioned between and within the transcribed sequences. The repetitive sequences include three copies of the mobile element Hoppel, one copy of the mobile element HB, and 18 DINE repeats. DINE is a novel, short repeated sequence dispersed throughout both cosmid sequences. One cosmid includes the previously described cubitus interruptus (ci) gene and two new genes: that a gene with a predicted amino acid sequence similar to ribosomal protein S3a which is consistent with the Minute(4)101 locus thought to be in the region, and a novel member of the protein family that includes plexin and met-hepatocyte growth factor receptor. The other cosmid contains only the two short 5'-most exons from the zinc-finger-homolog-2 (zfh-2) gene. This is the first extensive sequence analysis of noncoding DNA from chromosome 4. The distribution of the various repeats suggests its organization is similar to the beta-heterochromatic regions near the base of the major chromosome arms. Such a pattern may account for the diffuse banding of the polytene chromosome 4 and the variegation of many P-element transgenes on the chromosome. (+info)Symptoms of ehrlichiosis typically begin within one to two weeks after the tick bite and may include fever, headache, muscle pain, joint pain, and rash. In severe cases, the infection can spread to the bloodstream and cause more serious complications, such as respiratory distress, liver failure, and kidney failure.
Ehrlichiosis is diagnosed through a combination of physical examination, medical history, and laboratory tests, including a polymerase chain reaction (PCR) test to detect the bacterial DNA in the blood. Treatment typically involves antibiotics, such as doxycycline or azithromycin, which are effective against the bacteria that cause ehrlichiosis.
Prevention of ehrlichiosis primarily involves avoiding tick habitats and using tick-repellent clothing and insecticides to prevent tick bites. Early detection and treatment of ehrlichiosis can help reduce the risk of serious complications and improve outcomes for infected individuals.
Fumio Takei
ACTA2
Gene family
Actin, alpha skeletal muscle
Venom
Small nuclear ribonucleoprotein polypeptide E
Seagrass
Vomeronasal organ
PPIF
Polyphenol oxidase
Vomeronasal receptor
Arabinogalactan protein
Enrico Coen
APOA4
Entamoeba invadens
Olfactory receptor
MYH1
DVL1
DVL3
TM7SF2
7-Dehydrocholesterol reductase
Lamin B receptor
WIF domain
GNAI3
Patatin-like phospholipase
Eosinophil peroxidase
DVL2
TGM5
MHC class I
Patatin
Phaeodarea
Collared nightjar
Ictonychinae
Georissus
Exsudoporus frostii
Congenital mirror movement disorder
Mantamonadidae
Isothrix
Synemin
Heart-type fatty acid binding protein
HLA A1-B8-DR3-DQ2
Plakophilin-1
Phengodidae
Tulosesus congregatus
Antennal lobe
Ophiocordyceps sinensis
Ostropomycetidae
Eremoneura
Environmental DNA
Christine Maggs
Psophodidae
Stenomesseae
Rosales
List of fossil pinnipedimorphs
PDE4B
Peronosporaceae
Elective genetic and genomic testing
Rhynchoedura
Carbonic anhydrase III, muscle specific
IER5 generates a novel hypo-phosphorylated active form of HSF1 and contributes to tumorigenesis
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Genes8
- Semenov MV, Snyder M. Human dishevelled genes constitute a DHR-containing multigene family. (medlineplus.gov)
- The complete nucleotide sequence of a 4.3-kilobase DNA segment, containing a complete gene with structure very similar to those of known Family 2 cystatin genes, was determined. (lu.se)
- Tales genes pueden estar agrupados en el mismo cromosoma o dispersos en diferentes cromosomas. (bvsalud.org)
- Los tres últimos son ejemplos de genes reiterados en los que están presentes cientos de genes idénticos organizados en tándem. (bvsalud.org)
- At the early developmental stages (up to stage 61 ) of acquired competence, there appears to be no fixed pattern of expression, but a pattern of unequal activation of individual genes of the Xenopus vitellogenin multigene family is established thereafter and then retained at all developmental stages of tadpoles, froglets, and in both male and female adults. (xenbase.org)
- Procesos que se dan en distintos organismos, por el que surgen nuevos genes. (bvsalud.org)
- Identification of germline pathogenic variants in DNA damage repair genes by a next-generation sequencing multigene panel in BRCAX patients. (cdc.gov)
- Multigene testing of moderate-risk genes: be mindful of the missense. (who.int)
Mutations1
- Optimizing the identification of risk-relevant mutations by multigene panel testing in selected hereditary breast/ovarian cancer families. (cdc.gov)
Genomic1
- A new member of the human cystatin multigene family has been cloned from a genomic library using a cystatin C cDNA probe. (lu.se)
Gene1
- The structure of alpha-fetoprotein (AFP) is presented in light of AFP membership and position in the albuminoid gene family in comparison to other gene family members. (atlasgeneticsoncology.org)
Breast Cancer1
- RAD51 and breast cancer susceptibility: no evidence for rare variant association in the Breast Cancer Family Registry study. (cdc.gov)
Prognosis1
- To inform affect individuals and their related family members about diagnosis, prognosis, and treatment. (medscape.com)
Patients2
- Les isolats de Mycobacterium tuberculosis issus de patients précédemment traités (n = 88) provenant de toutes les régions de la République arabe syrienne ont été caractérisés en termes de sensibilité aux antibiotiques et en fonction de leur génotype au moyen de la méthode de PCR d'éléments répétitifs doubles (DRE-PCR) pour la proximité des éléments d'ADN IS6110 répétés (élément génétique mobile) et des séquences répétées PGRS (Polymorphic GC-rich repetitive sequence). (who.int)
- It is also ideal for screening patients' family members. (medscape.com)
Member1
- Cystatin D, being the first described member of a third subfamily within the cystatin Family 2, thus appears to have a distinct function in the body in contrast to other cystatins. (lu.se)
Members1
- The cystatin D sequence contains all regions of relevance for cysteine proteinase inhibitory activity and also the 4 cysteine residues that form disulfide bridges in the other members of cystatin Family 2. (lu.se)
Germline1
- 9. Detection of germline variants using expanded multigene panels in patients with localized pancreatic cancer . (nih.gov)
Proteins1
- For example, 2964 amiRNAs target annotated DNA and RNA binding protein families and 1777 target transporter proteins, and another sublibrary targets proteins of unknown function. (nih.gov)
Panel3
- 6. The results of multigene panel sequencing in Slovak HBOC families. (nih.gov)
- The results of multigene panel sequencing in Slovak HBOC families. (cdc.gov)
- When a family member has been diagnosed with FAP with a known mutation, the patient's at-risk family members can be screened for this mutation only , as opposed to undergoing the slower and more expensive process of multigene panel sequencing. (medscape.com)
Gene family2
- The human metallothionein gene family: structure and expression. (nih.gov)
- [ 2 ] Cytochrome P450 enzymes (CYPs) are a multi gene family of heme-containing isoenzymes that are involved in oxidative metabolism of drug, steroids and carcinogens. (medscape.com)