A species of halophilic archaea found in salt lakes. Some strains form a PURPLE MEMBRANE under anaerobic conditions.
A genus of HALOBACTERIACEAE whose growth requires a high concentration of salt. Binary fission is by constriction.
Any of the processes by which cytoplasmic or intercellular factors influence the differential control of gene action in archaea.
Proteins found in any species of archaeon.
Functionally and structurally differentiated, purple-pigmented regions of the cytoplasmic membrane of some strains of Halobacterium halobium. The membrane develops under anaerobic conditions and is made almost entirely of the purple pigment BACTERIORHODOPSINS. (From Singleton & Sainsbury Dictionary of Microbiology and Molecular Biology, 2d ed)
Light driven chloride ion pumps that are ubiquitously found in halophilic archaea (HALOBACTERIALES).
Rhodopsins found in the PURPLE MEMBRANE of halophilic archaea such as HALOBACTERIUM HALOBIUM. Bacteriorhodopsins function as an energy transducers, converting light energy into electrochemical energy via PROTON PUMPS.
Photosensory rhodopsins found in microorganisms such as HALOBACTERIA. They convert light signals into biochemical information that regulates certain cellular functions such as flagellar motor activity.
The functional genetic units of ARCHAEA.
The genetic complement of an archaeal organism (ARCHAEA) as represented in its DNA.
A genus of rod-shaped, extremely halophilic HALOBACTERIACEAE which grows in alkaline conditions. They are strictly aerobic and some strains are motile. Natronobacterium is found in soda lakes, alkaline salterns, and soda soils.
A species of halophilic archaea found in the Dead Sea.
The general name for a group of fat-soluble pigments found in green, yellow, and leafy vegetables, and yellow fruits. They are aliphatic hydrocarbons consisting of a polyisoprene backbone.
That portion of the electromagnetic spectrum in the visible, ultraviolet, and infrared range.
Photochemistry is the study of chemical reactions induced by absorption of light, resulting in the promotion of electrons to higher energy levels and subsequent formation of radicals or excited molecules that can undergo various reaction pathways.
One of the three domains of life (the others being BACTERIA and Eukarya), formerly called Archaebacteria under the taxon Bacteria, but now considered separate and distinct. They are characterized by: (1) the presence of characteristic tRNAs and ribosomal RNAs; (2) the absence of peptidoglycan cell walls; (3) the presence of ether-linked lipids built from branched-chain subunits; and (4) their occurrence in unusual habitats. While archaea resemble bacteria in morphology and genomic organization, they resemble eukarya in their method of genomic replication. The domain contains at least four kingdoms: CRENARCHAEOTA; EURYARCHAEOTA; NANOARCHAEOTA; and KORARCHAEOTA.
Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories.
The order of amino acids as they occur in a polypeptide chain. This is referred to as the primary structure of proteins. It is of fundamental importance in determining PROTEIN CONFORMATION.
Proteins found in any species of bacterium.
A family of extremely halophilic archaea found in environments with high salt concentrations, such as salt lakes, evaporated brines, or salted fish. Halobacteriaceae are either obligate aerobes or facultative anaerobes and are divided into at least twenty-six genera including: HALOARCULA; HALOBACTERIUM; HALOCOCCUS; HALOFERAX; HALORUBRUM; NATRONOBACTERIUM; and NATRONOCOCCUS.

Location of a cation-binding site in the loop between helices F and G of bacteriorhodopsin as studied by 13C NMR. (1/379)

The high-affinity cation-binding sites of bacteriorhodopsin (bR) were examined by solid-state 13C NMR of samples labeled with [3-13C]Ala and [1-13C]Val. We found that the 13C NMR spectra of two kinds of blue membranes, deionized (pH 4) and acid blue at pH 1.2, were very similar and different from that of the native purple membrane. This suggested that when the surface pH is lowered, either by removal of cations or by lowering the bulk pH, substantial change is induced in the secondary structure of the protein. Partial replacement of the bound cations with Na+, Ca2+, or Mn2+ produced additional spectral changes in the 13C NMR spectra. The following conclusions were made. First, there are high-affinity cation-binding sites in both the extracellular and the cytoplasmic regions, presumably near the surface, and one of the preferred cation-binding sites is located at the loop between the helix F and G (F-G loop) near Ala196, consistent with the 3D structure of bR from x-ray diffraction and cryoelectron microscopy. Second, the bound cations undergo rather rapid exchange (with a lifetime shorter than 3 ms) among various types of cation-binding sites. As expected from the location of one of the binding sites, cation binding induced conformational alteration of the F-G interhelical loop.  (+info)

Car: a cytoplasmic sensor responsible for arginine chemotaxis in the archaeon Halobacterium salinarum. (2/379)

A new metabolic signaling pathway for arginine, both a chemoeffector and a fermentative energy source, is described for Halobacterium salinarum. Systematic screening of 80+ potentially chemotactic compounds with two behavioral assays identified leucine, isoleucine, valine, methionine, cysteine, arginine and several peptides as strong chemoattractants. Deletion analysis of a number of potential halobacterial transducer genes led to the identification of Car, a specific cytoplasmic arginine transducer which lacks transmembrane helices and was biochemically shown to be localized in the cytoplasm. Flow assays were used to show specific adaptive responses to arginine and ornithine in wild-type but not Deltacar cells, demonstrating the role of Car in sensing arginine. The signaling pathway from external arginine to the flagellar motor of the cell involves an arginine:ornithine antiporter which was quantitatively characterized for its transport kinetics and inhibitors. By compiling the chemotactic behavior, the adaptive responses and the characteristics of the arginine:ornithine antiporter to arginine and its analogs, we now understand how the combination of arginine uptake and its metabolic conversion is required to build an effective sensing system. In both bacteria and the archaea this is the first chemoeffector molecule of a soluble methylatable transducer to be identified.  (+info)

Simulation analysis of the retinal conformational equilibrium in dark-adapted bacteriorhodopsin. (3/379)

In dark-adapted bacteriorhodopsin (bR) the retinal moiety populates two conformers: all-trans and (13,15)cis. Here we examine factors influencing the thermodynamic equilibrium and conformational transition between the two forms, using molecular mechanics and dynamics calculations. Adiabatic potential energy mapping indicates that whereas the twofold intrinsic torsional potentials of the C13==C14 and C15==N16 double bonds favor a sequential torsional pathway, the protein environment favors a concerted, bicycle-pedal mechanism. Which of these two pathways will actually occur in bR depends on the as yet unknown relative weight of the intrinsic and environmental effects. The free energy difference between the conformers was computed for wild-type and modified bR, using molecular dynamics simulation. In the wild-type protein the free energy of the (13,15)cis retinal form is calculated to be 1.1 kcal/mol lower than the all-trans retinal form, a value within approximately kBT of experiment. In contrast, in isolated retinal the free energy of the all-trans state is calculated to be 2.1 kcal/mol lower than (13,15)cis. The free energy differences are similar to the adiabatic potential energy differences in the various systems examined, consistent with an essentially enthalpic origin. The stabilization of the (13,15)cis form in bR relative to the isolated retinal molecule is found to originate from improved protein-protein interactions. Removing internal water molecules near the Schiff base strongly stabilizes the (13,15)cis form, whereas a double mutation that removes negative charges in the retinal pocket (Asp85 to Ala; Asp212 to Ala) has the opposite effect.  (+info)

Chloride ion binding to bacteriorhodopsin at low pH: an infrared spectroscopic study. (4/379)

Bacteriorhodopsin (bR) and halorhodopsin (hR) are light-induced ion pumps in the cell membrane of Halobacterium salinarium. Under normal conditions bR is an outward proton transporter, whereas hR is an inward Cl- transporter. There is strong evidence that at very low pH and in the presence of Cl-, bR transports Cl- ions into the cell, similarly to hR. The chloride pumping activity of bR is connected to the so-called acid purple state. To account for the observed effects in bR a tentative complex counterion was suggested for the protonated Schiff base of the retinal chromophore. It would consist of three charged residues: Asp-85, Asp-212, and Arg-82. This quadruplet (including the Schiff base) would also serve as a Cl- binding site at low pH. We used Fourier transform infrared difference spectroscopy to study the structural changes during the transitions between the normal, acid blue, and acid purple states. Asp-85 and Asp-212 were shown to participate in the transitions. During the normal-to-acid blue transition, Asp-85 protonates. When the pH is further lowered in the presence of Cl-, Cl- binds and Asp-212 also protonates. The binding of Cl- and the protonation of Asp-212 occur simultaneously, but take place only when Asp-85 is already protonated. It is suggested that HCl is taken up in undissociated form in exchange for a neutral water molecule.  (+info)

Time-resolved absorption and photothermal measurements with sensory rhodopsin I from Halobacterium salinarum. (5/379)

An expansion accompanying the formation of the first intermediate in the photocycle of transducer-free sensory rhodopsin I (SRI) was determined by means of time-resolved laser-induced optoacoustic spectroscopy. For the native protein (SRI-WT), the absolute value of the expansion is approximately 5.5 mL and for the mutant SRI-D76N, approximately 1.5 mL per mol of phototransformed species (in 0.5 M NaCl), calculated by using the formation quantum yield for the first intermediate (S610) of Phi610 = 0.4 +/- 0.05 for SRI-WT and 0.5 +/- 0.05 for SRI-D76N, measured by laser-induced optoacoustic spectroscopy and by laser flash photolysis. The similarity in Phi610 and in the determined value of the energy level of S610, E610 = (142 +/- 12) kJ/mol for SRI-WT and SRI-D76N indicates that Asp76 is not directly involved in the first step of the phototransformation. The increase with pH of the magnitude of the structural volume change for the formation of S610 in SRI-WT and in SRI-D76N upon excitation with 580 nm indicates also that amino acids other than Asp76, and other than those related to the Schiff base, are involved in the process. The difference in structural volume changes as well as differences in the activation parameters for the S610 decay should be attributed to differences in the rigidity of the cavity surrounding the chromophore. Except for the decay of the first intermediate, which is faster than in the SRI-transducer complex, the rate constants of the photocycle for transducer-free SRI in detergent suspension are strongly retarded with respect to wild-type membranes (this comparison should be done with great care because the preparation of both samples is very different).  (+info)

Halobacterial rhodopsins. (6/379)

Following the discovery of the bacteriorhodopsin proton pump in Halobacterium halobium (salinarum), not only the halorhodopsin halide pump and two photosensor rhodopsins (sensory rhodopsin and phoborhodopsin) in the same species, but also homologs of these four rhodopsins in strains of other genera of Halobacteriaceae have been reported. Twenty-eight full (and partial) sequences of the genomic DNA of these rhodopsins have been analyzed. The deduced amino acid sequences have led to new strategies and tactics for understanding bacterial rhodopsins on a comparative basis, as summarized briefly in this article. The data discussed include (i) alignment of the sequences to qualify/characterize the conserved residues; (ii) assignment of residues that cause differences in function(s)/properties; and (iii) phylogeny of the halobacterial rhodopsins to suggest their evolutionary paths. The four kinds of rhodopsin in each strain are assumed, on the basis of their genera-specific distributions, to have arisen by at least two gene-duplication processes during evolution prior to generic speciation. The first duplication of the rhodopsin ancestor gene yielded two genes, each of which was duplicated again to give four genes in the ancestor halobacterium. The bacterium carrying four rhodopsin genes, after accumulating mutations, became ready for generic speciation and the delivery of four rhodopsins to each species. The original rhodopsin ancestor is speculated to be closest to the proton pump (bacteriorhodopsin).  (+info)

Protective roles of bacterioruberin and intracellular KCl in the resistance of Halobacterium salinarium against DNA-damaging agents. (7/379)

Halobacterium salinarium, a member of the extremely halophilic archaebacteria, contains a C50-carotenoid namely bacterioruberin. We have previously reported the high resistance of this organism against the lethal actions of DNA-damaging agents including ionizing radiation and ultraviolet light (UV). In this study, we have examined whether bacterioruberin and the highly concentrated salts in this bacterium play protective roles against the lethal actions of ionizing radiation, UV, hydrogen peroxide, and mitomycin-C (MMC). The colourless mutant of H. salinarium deficient in bacterioruberin was more sensitive than the red-pigmented wild-type to all tested DNA-damaging agents except MMC. Circular dichroism (CD) spectra of H. salinarium chromosomal DNA at various concentrations of KCl (0-3.5 M) were similar to that of B-DNA, indicating that no conformational changes occurred as a result of high salt concentrations. However, DNA strand-breaks induced by ionizing radiation were significantly reduced by the presence of either bacterioruberin or concentrated KCl, presumably due to scavenging of free radicals. These results suggest that bacterioruberin and intracellular KCl of H. salinarium protect this organism against the lethal effects of oxidative DNA-damaging agents.  (+info)

Intermediate spectra and photocycle kinetics of the Asp96 --> asn mutant bacteriorhodopsin determined by singular value decomposition with self-modeling. (8/379)

Singular value decomposition with self-modeling is applied to resolve the intermediate spectra and kinetics of the Asp96 --> Asn mutant bacteriorhodopsin. The search for the difference spectra of the intermediates is performed in eigenvector space on the stoichiometric plane. The analysis of data at pH values ranging from 4 to 8 and temperatures between 5 and 25 degrees C reveals significant, early partial recovery of the initial state after photoexcitation. The derived spectra are not biased by assumed photocycles. The intermediate spectra derived in the initial step differ from spectra determined in prior analyses, which results in intermediate concentrations with improved stoichiometric properties. Increasingly more accurate photocycles follow with increasing assumed complexity, of which parallel models are favored, consistent with recent, independent experimental evidence.  (+info)

"Halobacterium salinarum" is not a medical term, but a scientific name for a type of archaea (single-celled microorganism) that is commonly found in extremely salty environments, such as salt lakes and solar salterns. It is often used as a model organism in research related to archaea and extremophiles.

Here's a brief scientific definition:

"Halobacterium salinarum" is a species of halophilic archaea belonging to the family Halobacteriaceae. It is a rod-shaped, gram-negative organism that requires high salt concentrations (in the range of 15-25%) for growth and survival. This archaeon is known for its ability to produce bacteriorhodopsin, a light-driven proton pump, which gives it a purple color and allows it to generate energy through phototrophy in addition to being chemotrophic. It is also capable of forming endospores under conditions of nutrient deprivation.

Halobacterium is a genus of extremely halophilic archaea, which means they require a high salt concentration to grow. They are often found in salt lakes, salt pans, and other hypersaline environments. These microorganisms contain bacteriorhodopsin, a light-driven proton pump, which gives them a purple color and allows them to generate ATP using light energy, similar to photosynthesis in plants. Halobacteria are also known for their ability to survive under extreme conditions, such as high temperatures, radiation, and desiccation.

Gene expression regulation in archaea refers to the complex cellular processes that control the transcription and translation of genes into functional proteins. This regulation is crucial for the survival and adaptation of archaea to various environmental conditions.

Archaea, like bacteria and eukaryotes, use a variety of mechanisms to regulate gene expression, including:

1. Transcriptional regulation: This involves controlling the initiation, elongation, and termination of transcription by RNA polymerase. Archaea have a unique transcription machinery that is more similar to eukaryotic RNA polymerases than bacterial ones. Transcriptional regulators, such as activators and repressors, bind to specific DNA sequences near the promoter region to modulate transcription.
2. Post-transcriptional regulation: This includes processes like RNA processing, modification, and degradation that affect mRNA stability and translation efficiency. Archaea have a variety of RNA-binding proteins and small non-coding RNAs (sRNAs) that play crucial roles in post-transcriptional regulation.
3. Translational regulation: This involves controlling the initiation, elongation, and termination of translation by ribosomes. Archaea use a unique set of translation initiation factors and tRNA modifications to regulate protein synthesis.
4. Post-translational regulation: This includes processes like protein folding, modification, and degradation that affect protein stability and function. Archaea have various chaperones, proteases, and modifying enzymes that participate in post-translational regulation.

Overall, gene expression regulation in archaea is a highly dynamic and coordinated process involving multiple layers of control to ensure proper gene expression under changing environmental conditions.

Archaeal proteins are proteins that are encoded by the genes found in archaea, a domain of single-celled microorganisms. These proteins are crucial for various cellular functions and structures in archaea, which are adapted to survive in extreme environments such as high temperatures, high salt concentrations, and low pH levels.

Archaeal proteins share similarities with both bacterial and eukaryotic proteins, but they also have unique features that distinguish them from each other. For example, many archaeal proteins contain unusual amino acids or modifications that are not commonly found in other organisms. Additionally, the three-dimensional structures of some archaeal proteins are distinct from their bacterial and eukaryotic counterparts.

Studying archaeal proteins is important for understanding the biology of these unique organisms and for gaining insights into the evolution of life on Earth. Furthermore, because some archaea can survive in extreme environments, their proteins may have properties that make them useful in industrial and medical applications.

The term "Purple Membrane" is used in the context of medical research and biochemistry to refer to a specific structure within certain types of cells. It's not a commonly used term in general clinical medicine, but it does have significance in specific areas of study.

In a medical definition, Purple Membrane refers to a specialized portion of the cell membrane found in certain halobacteria (salt-loving bacteria). This membrane is called "purple" because it contains a light-absorbing pigment-protein complex called bacteriorhodopsin, which appears purple. Bacteriorhodopsin plays a crucial role in energy production for the cell by converting light energy into chemical energy through a process called chemiosmosis.

It's important to note that this term is highly specialized and not something that would typically come up in routine medical practice or patient care.

Halorhodopsins are light-driven chloride pumps that are found in the membranes of certain archaea and halobacteria. They are a type of rhodopsin, which is a protein molecule that contains a retinal chromophore, a light-sensitive compound. When halorhodopsins absorb light, they undergo a conformational change that causes them to transport chloride ions into the cell. This process helps these organisms to regulate their ion balance and maintain their internal pH in hypersaline environments. Halorhodopsins have potential applications in optogenetics, a research field that uses light to control neuronal activity, because they can be used to hyperpolarize neurons and inhibit their electrical activity.

Bacteriorhodopsins are a type of protein found in certain archaea, a group of single-celled microorganisms. They are most commonly found in the archaea of the genus Halobacterium, which live in extremely salty environments such as salt lakes and solar salterns.

Bacteriorhodopsins are embedded in the cell membrane of these archaea and contain a retinal molecule, which is a type of vitamin A derivative. When exposed to light, the retinal changes shape, which causes a conformational change in the bacteriorhodopsin protein. This leads to the pumping of protons (hydrogen ions) across the cell membrane, generating a proton gradient.

The proton gradient created by bacteriorhodopsins can be used to generate ATP, which is the main energy currency of the cell. Bacteriorhodopsins are therefore involved in energy production in these archaea and are often referred to as light-driven proton pumps. They have also been studied extensively for their potential applications in optoelectronics and biotechnology.

Sensory rhodopsins are light-sensitive proteins found in the archaea, a group of single-celled microorganisms. They are part of a larger family of proteins called rhodopsins which contain retinal, a light-sensitive molecule that undergoes a change in shape when it absorbs light.

In sensory rhodopsins, this light-induced change in the retinal triggers a signal transduction pathway that allows the archaea to detect and respond to different wavelengths of light in their environment. This is important for the archaea's survival as it helps them to regulate their behavior, such as swimming towards or away from light sources.

There are two types of sensory rhodopsins, known as SR I and SR II, which allow the archaea to detect different wavelengths of light. SR I is responsible for negative phototaxis, or movement away from light, while SR II is involved in positive phototaxis, or movement towards light.

Overall, sensory rhodopsins play a crucial role in helping archaea to navigate and survive in their environment by allowing them to detect and respond to different wavelengths of light.

I'm happy to help! However, I believe there might be a slight mistake in your question. "Archaeal" is not a term used to describe genes but rather a group of single-celled organisms that are classified as archaea.

Archaea are one of the three domains of life, along with bacteria and eukaryotes (which include plants, animals, and fungi). Archaea are unique because they share characteristics with both bacteria and eukaryotes, but they also have many features that are distinctly their own. For example, archaea have a different cell membrane structure than bacteria and eukaryotes, which allows them to thrive in extreme environments such as hot springs, salt mines, and deep-sea vents.

Genes, on the other hand, are segments of DNA that contain the instructions for making proteins or performing other important functions in an organism's cells. All living organisms, including archaea, have genes that are passed down from generation to generation. Archaeal genes are made up of the same four nucleotides (A, T, C, and G) as bacterial and eukaryotic genes, and they code for proteins and RNA molecules that are essential for the survival and reproduction of archaea.

So, to summarize, there is no specific definition for "Archaeal genes" because "archaeal" is not a term used to describe genes. However, we can say that archaeal genes are segments of DNA that contain the instructions for making proteins and performing other important functions in archaea.

An archaeal genome refers to the complete set of genetic material or DNA present in an archaea, a single-celled microorganism that is found in some of the most extreme environments on Earth. The genome of an archaea contains all the information necessary for its survival, including the instructions for building proteins and other essential molecules, as well as the regulatory elements that control gene expression.

Archaeal genomes are typically circular in structure and range in size from about 0.5 to over 5 million base pairs. They contain genes that are similar to those found in bacteria and eukaryotes, as well as unique genes that are specific to archaea. The study of archaeal genomes has provided valuable insights into the evolutionary history of life on Earth and has helped scientists understand the adaptations that allow these organisms to thrive in such harsh environments.

"Natronobacterium" is a genus of halophilic archaea that was first identified in 1987. These microorganisms are commonly found in highly saline environments, such as salt lakes and salt mines, and can tolerate extremely high salt concentrations. They are able to obtain energy through the process of respiration, using various electron acceptors such as sulfur or nitrate. Natronobacterium species are characterized by their ability to produce a unique type of gas vesicle, which allows them to control their buoyancy in response to changes in environmental conditions. They play an important role in the global carbon and sulfur cycles and have potential applications in biotechnology and industrial processes.

I apologize for any confusion, but "Haloferax volcanii" is not a medical term or concept. It is actually a species of archaea (single-celled microorganisms) that is commonly found in extremely salty environments, such as salt lakes and salt mines. The name "Haloferax volcanii" refers to the fact that this organism is halophilic (salt-loving) and was first isolated from a volcanic site.

Here is a brief scientific definition of "Haloferax volcanii":

Haloferax volcanii is a species of halophilic archaea belonging to the family Haloferacaceae. It is a rod-shaped, motile organism that is commonly found in hypersaline environments such as salt lakes and salt mines. The optimum growth temperature for H. volcanii is around 45°C, and it can tolerate a wide range of salinities (up to 3 M NaCl). It has a relatively large genome (around 4 Mb) that contains many genes involved in DNA repair and stress response, making it well-adapted to life in extreme environments. H. volcanii is also known for its ability to form stable triparental mating structures, which are used in genetic studies of archaea.

Carotenoids are a class of pigments that are naturally occurring in various plants and fruits. They are responsible for the vibrant colors of many vegetables and fruits, such as carrots, pumpkins, tomatoes, and leafy greens. There are over 600 different types of carotenoids, with beta-carotene, alpha-carotene, lycopene, lutein, and zeaxanthin being some of the most well-known.

Carotenoids have antioxidant properties, which means they can help protect the body's cells from damage caused by free radicals. Some carotenoids, such as beta-carotene, can be converted into vitamin A in the body, which is important for maintaining healthy vision, skin, and immune function. Other carotenoids, such as lycopene and lutein, have been studied for their potential role in preventing chronic diseases, including cancer and heart disease.

In addition to being found in plant-based foods, carotenoids can also be taken as dietary supplements. However, it is generally recommended to obtain nutrients from whole foods rather than supplements whenever possible, as food provides a variety of other beneficial compounds that work together to support health.

In the context of medical terminology, "light" doesn't have a specific or standardized definition on its own. However, it can be used in various medical terms and phrases. For example, it could refer to:

1. Visible light: The range of electromagnetic radiation that can be detected by the human eye, typically between wavelengths of 400-700 nanometers. This is relevant in fields such as ophthalmology and optometry.
2. Therapeutic use of light: In some therapies, light is used to treat certain conditions. An example is phototherapy, which uses various wavelengths of ultraviolet (UV) or visible light for conditions like newborn jaundice, skin disorders, or seasonal affective disorder.
3. Light anesthesia: A state of reduced consciousness in which the patient remains responsive to verbal commands and physical stimulation. This is different from general anesthesia where the patient is completely unconscious.
4. Pain relief using light: Certain devices like transcutaneous electrical nerve stimulation (TENS) units have a 'light' setting, indicating lower intensity or frequency of electrical impulses used for pain management.

Without more context, it's hard to provide a precise medical definition of 'light'.

I'm sorry for any confusion, but "photochemistry" is not a term typically used in medical definitions. Photochemistry is a branch of chemistry that deals with the chemical effects of light. It involves the absorption of light by a substance, which can lead to the promotion of an electron to a higher energy state, and subsequently result in various chemical reactions.

In a medical context, photochemical processes might be discussed in relation to certain therapies or diagnostic techniques, such as photodynamic therapy for cancer treatment, where a photosensitizing agent is used that reacts with light to produce singlet oxygen or other reactive species to destroy nearby cells. However, it's not a term used to define a specific medical condition or concept in the same way that one might define "inflammation" or "metabolism."

Archaea are a domain of single-celled microorganisms that lack membrane-bound nuclei and other organelles. They are characterized by the unique structure of their cell walls, membranes, and ribosomes. Archaea were originally classified as bacteria, but they differ from bacteria in several key ways, including their genetic material and metabolic processes.

Archaea can be found in a wide range of environments, including some of the most extreme habitats on Earth, such as hot springs, deep-sea vents, and highly saline lakes. Some species of Archaea are able to survive in the absence of oxygen, while others require oxygen to live.

Archaea play important roles in global nutrient cycles, including the nitrogen cycle and the carbon cycle. They are also being studied for their potential role in industrial processes, such as the production of biofuels and the treatment of wastewater.

Molecular sequence data refers to the specific arrangement of molecules, most commonly nucleotides in DNA or RNA, or amino acids in proteins, that make up a biological macromolecule. This data is generated through laboratory techniques such as sequencing, and provides information about the exact order of the constituent molecules. This data is crucial in various fields of biology, including genetics, evolution, and molecular biology, allowing for comparisons between different organisms, identification of genetic variations, and studies of gene function and regulation.

An amino acid sequence is the specific order of amino acids in a protein or peptide molecule, formed by the linking of the amino group (-NH2) of one amino acid to the carboxyl group (-COOH) of another amino acid through a peptide bond. The sequence is determined by the genetic code and is unique to each type of protein or peptide. It plays a crucial role in determining the three-dimensional structure and function of proteins.

Bacterial proteins are a type of protein that are produced by bacteria as part of their structural or functional components. These proteins can be involved in various cellular processes, such as metabolism, DNA replication, transcription, and translation. They can also play a role in bacterial pathogenesis, helping the bacteria to evade the host's immune system, acquire nutrients, and multiply within the host.

Bacterial proteins can be classified into different categories based on their function, such as:

1. Enzymes: Proteins that catalyze chemical reactions in the bacterial cell.
2. Structural proteins: Proteins that provide structural support and maintain the shape of the bacterial cell.
3. Signaling proteins: Proteins that help bacteria to communicate with each other and coordinate their behavior.
4. Transport proteins: Proteins that facilitate the movement of molecules across the bacterial cell membrane.
5. Toxins: Proteins that are produced by pathogenic bacteria to damage host cells and promote infection.
6. Surface proteins: Proteins that are located on the surface of the bacterial cell and interact with the environment or host cells.

Understanding the structure and function of bacterial proteins is important for developing new antibiotics, vaccines, and other therapeutic strategies to combat bacterial infections.

Halobacteriaceae is a family of Archaea, a domain of single-celled organisms. These microorganisms are extremely halophilic, meaning they require high concentrations of salt to survive and grow. They are typically found in environments such as salt lakes, salt pans, and other saline habitats.

The cells of Halobacteriaceae are usually rod-shaped or irregularly shaped, and they can form pink, red, or purple colorations in their natural environments due to the presence of carotenoid pigments and retinal-based proteins called bacteriorhodopsins. These proteins function as light-driven proton pumps, allowing the cells to generate a proton gradient and create ATP, which is their primary energy source.

Halobacteriaceae are also known for their ability to survive in extreme conditions, such as high temperatures, radiation, and desiccation. They have evolved unique adaptations to cope with these harsh environments, making them a fascinating subject of study in the field of extremophile microbiology.

Halobacterium salinarum, formerly known as Halobacterium cutirubrum or Halobacterium halobium, is an extremely halophilic ... Type strain of Halobacterium salinarum at BacDive - the Bacterial Diversity Metadatabase Portal: Food (CS1 Afrikaans-language ... Whole genome sequences are available for two strains of H. salinarum, NRC-1 and R1. The Halobacterium sp. NRC-1 genome consists ... H. salinarum has also been found in high-salt food such as salt pork, marine fish, and sausages. The ability of H. salinarum to ...
We present a genome-scale metabolic reconstruction for the extreme halophile Halobacterium salinarum. The reconstruction ... Reconstruction, modeling & analysis of Halobacterium salinarum R-1 metabolism† Orland Gonzalez,*ab Susanne Gronau,a Michaela ... Reconstruction, modeling & analysis of Halobacterium salinarum R-1 metabolism. O. Gonzalez, S. Gronau, M. Falb, F. Pfeiffer, E ... We present a genome-scale metabolic reconstruction for the extreme halophile Halobacterium salinarum. The reconstruction ...
Flagellar Rotation in the Archaeon Halobacterium salinarum Depends on ATP ... Streif, S., Staudinger, W. F., Marwan, W., & Oesterhelt, D. (2008). Flagellar Rotation in the Archaeon Halobacterium salinarum ...
Halobacterium cutirubrum > Halobacterium salinarum Halobacterium denitrificans > Haloferax denitrificans Halobacterium ... Haloferax mediterranei Halobacterium pharaonis > Natronomonas pharaonis Halobacterium piscisalsi > Halobacterium salinarum ... Halobacterium salinarum Halobacterium lacusprofundi > Halorubrum lacusprofundi Halobacterium mediterranei > ... Some strains of Halobacterium, including Halobacterium salinarum, are being explored for medical applications of their ...
Species: Halobacterium salinarum [TaxId:2242]. Database cross-references and differences (RAF-indexed): *Uniprot Q9HMP7 Domains ... Species: Halobacterium salinarum [TaxId:2242]. Database cross-references and differences (RAF-indexed): *Uniprot Q9HMP7 Domains ... Species: Halobacterium salinarum [TaxId:2242]. Database cross-references and differences (RAF-indexed): *Uniprot Q9HMP7 Domains ... Species: Halobacterium salinarum [TaxId:2242]. Database cross-references and differences (RAF-indexed): *Uniprot Q9HMP7 Domains ...
Identification of the arginine/ornithine antiporter ArcD from Halobacterium salinarum. Wimmer F, Oberwinkler T, Bisle B, Tittor ...
Halobacterium salinarum - The Movie: https://www.youtube.com/watch?v=BciYDrbQ9EI. *Halobacterium salinarum, © Dr. Bernard Jenni ... Halobacterium salinarum - working groups/ institutes. *Microbiology and Archaea, Felicitas Pfeifer, TU Darmstadt: https://www. ... Halobacterium salinarum - Video Learning: https://www.youtube.com/watch?v=YYOLxN63Stw. * ... Stefan Streif: Understanding Phototaxis of Halobacterium salinarum, Shaker Verlag 5/2011, https://www.shaker.de/de/content/ ...
Halobacterium salinarum R1, Halobacterium sp. NRC-1, Haloferax volcanii DS2, Haloquadratum walsbyi DSM 16790, Natronomonas ... Halobacterium salinarum R1, Halobacterium sp. NRC-1, Haloferax volcanii DS2, Haloquadratum walsbyi DSM 16790, Natronomonas ... Oren A . (1983). Halobacterium sodomense sp. nov., a Dead Sea halobacterium with an extremely high magnesium requirement. Int J ... Mullakhanbhai MF, Larsen H . (1975). Halobacterium volcanii spec. nov., a Dead Sea halobacterium with a moderate salt ...
The fla gene cluster is involved in the biogenesis of flagella in Halobacterium salinarum. Molecular Microbiology 41 (3), pp. ... Kupper, J.; Marwan, W.; Typke, D.; Grunberg, H.; Uwer, U.; Gluch, M.; Oesterhelt, D.: The flagellar bundle of halobacterium ...
Regulation der Gasvesikelbildung bei Halobacterium salinarum PHH1. Technische Universität. Ph.D. Thesis, Primary publication. ...
Species Halobacterium salinarum [TaxId:2242] [101135] (5 PDB entries). Uniprot Q9HMP7. *. Domain d1tkpc_: 1tkp C: [112480]. ... d1tkpc_ a.25.1.1 (C:) Dodecameric ferritin homolog {Halobacterium salinarum [TaxId: 2242]} ... structural analysis of h.salinarum dpsa in its low and high iron states ...
IV PILUS; HALOBACTERIUM-SALINARUM; CRYOELECTRON TOMOGRAPHY; MOLECULAR ARCHITECTURE; CHEMORECEPTOR ARRAYS; FLAGELLAR MOTORS; S- ...
Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum. 2az3. Structure of a halophilic ... nucleoside diphosphate kinase from Halobacterium salinarum in complex with CDP. 2b8p. Crystal structure of Acanthamoeba ...
Dieter Oesterhelt, she investigated sensory signal transduction in the archaeon Halobacterium salinarum. By employing molecular ... Dieter Oesterhelt, she investigated sensory signal transduction in the archaeon Halobacterium salinarum. By employing molecular ...
Halobacterium salinarum. Using these models fitted to growth data, two statistical tests were developed to quantify the ...
In 2014, Eun earned the Helen Hay Whitney Fellowship and launched into her work with Halobacterium salinarum, a halophilic ...
... first described member of this protein family is the light-driven proton-pump Bacteriorhodopsin from Halobacterium salinarum [2 ... 2] Oesterhelt D.,Stoeckenius W. (1971) "Rhodopsin-like Protein from the Purple Membrane of Halobacterium halobium " Nature New ...
Halobacterium salinarum nom. corrig., a name to replace Halobacterium salinarium (Elazari-Volcani) and to include Halobacterium ... halobium and Halobacterium cutirubrum.. Int. J. Syst. Bacteriol. 46: 347, 1996.. DOI: 10.1099/00207713-46-1-347.. Copyright © ...
As with other pink salt lakes in the region, the color could originate from the organisms Dunaliella salina and Halobacteria. ... Salina de Torrevieja, Spain. Shutterstock The pink color of the salt lake of Torrevieja is caused by the presence of salt- ... loving archaea Halobacterium and Dunaliella salina, a single living organism that can exist in water with a high salt ... Hutt Lagoon boasts a pink hue created by presence of carotenoid-producing algae Dunaliella salina, a source of ß-carotene, a ...
IBRAHIM, AMR GALAL ABD EL-RAHEEM ; VÊNCIO, RICARDO Z. N. ; LORENZETTI, ALAN P. R. ; KOIDE, TIE ; Halobacterium salinarum and ... The Primary Antisense Transcriptome of Halobacterium salinarum NRC-1. Genes, v. 10, p. 280-, 2019 ... and Gas Vesicles Biogenesis in Halobacterium salinarum. Microorganisms, v. 10, p. 2442-, 2022 ...
Halobacterium halobium. Halobacterium salinarum. Methanogens. Euryarchaeota. C - DISEASES. Deleted term. Concept absorbed by. ...
Halobacterium halobium. Halobacterium salinarum. Methanogens. Euryarchaeota. C - DISEASES. Deleted term. Concept absorbed by. ...
HALOBACTERIUM SALINARIUM. Halobacterium salinarum. C - DISEASES. Changed terms. Replaced-by. C01 - BACTERIAL INFECTIONS AND ...
HALOBACTERIUM SALINARIUM. Halobacterium salinarum. C - DISEASES. Changed terms. Replaced-by. C01 - BACTERIAL INFECTIONS AND ...
HALOBACTERIUM SALINARIUM. Halobacterium salinarum. C - DISEASES. Changed terms. Replaced-by. C01 - BACTERIAL INFECTIONS AND ...
Halobacterium halobium. Halobacterium salinarum. Methanogens. Euryarchaeota. C - DISEASES. Deleted term. Concept absorbed by. ...
HALOBACTERIUM SALINARIUM. Halobacterium salinarum. C - DISEASES. Changed terms. Replaced-by. C01 - BACTERIAL INFECTIONS AND ...
Halobacterium halobium. Halobacterium salinarum. Methanogens. Euryarchaeota. C - DISEASES. Deleted term. Concept absorbed by. ...

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