Evolution, Molecular
Directed Molecular Evolution
The techniques used to produce molecules exhibiting properties that conform to the demands of the experimenter. These techniques combine methods of generating structural changes with methods of selection. They are also used to examine proposed mechanisms of evolution under in vitro selection conditions.
Selection, Genetic
Molecular Sequence Data
Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories.
Cultural Evolution
Models, Genetic
Species Specificity
The restriction of a characteristic behavior, anatomical structure or physical system, such as immune response; metabolic response, or gene or gene variant to the members of one species. It refers to that property which differentiates one species from another but it is also used for phylogenetic levels higher or lower than the species.
Sequence Analysis, DNA
Base Sequence
Amino Acid Sequence
Clonal Evolution
Adaptation, Biological
Sequence Alignment
The arrangement of two or more amino acid or base sequences from an organism or organisms in such a way as to align areas of the sequences sharing common properties. The degree of relatedness or homology between the sequences is predicted computationally or statistically based on weights assigned to the elements aligned between the sequences. This in turn can serve as a potential indicator of the genetic relatedness between the organisms.
Multigene Family
A set of genes descended by duplication and variation from some ancestral gene. Such genes may be clustered together on the same chromosome or dispersed on different chromosomes. Examples of multigene families include those that encode the hemoglobins, immunoglobulins, histocompatibility antigens, actins, tubulins, keratins, collagens, heat shock proteins, salivary glue proteins, chorion proteins, cuticle proteins, yolk proteins, and phaseolins, as well as histones, ribosomal RNA, and transfer RNA genes. The latter three are examples of reiterated genes, where hundreds of identical genes are present in a tandem array. (King & Stanfield, A Dictionary of Genetics, 4th ed)
Fossils
Genome
Mutation
Evolution, Chemical
Chemical and physical transformation of the biogenic elements from their nucleosynthesis in stars to their incorporation and subsequent modification in planetary bodies and terrestrial biochemistry. It includes the mechanism of incorporation of biogenic elements into complex molecules and molecular systems, leading up to the origin of life.
Hominidae
Likelihood Functions
Mammals
Gene Transfer, Horizontal
The naturally occurring transmission of genetic information between organisms, related or unrelated, circumventing parent-to-offspring transmission. Horizontal gene transfer may occur via a variety of naturally occurring processes such as GENETIC CONJUGATION; GENETIC TRANSDUCTION; and TRANSFECTION. It may result in a change of the recipient organism's genetic composition (TRANSFORMATION, GENETIC).
Conserved Sequence
Sequence Homology, Amino Acid
Adaptation, Physiological
Genetic Speciation
Models, Biological
Angiosperms
Members of the group of vascular plants which bear flowers. They are differentiated from GYMNOSPERMS by their production of seeds within a closed chamber (OVARY, PLANT). The Angiosperms division is composed of two classes, the monocotyledons (Liliopsida) and dicotyledons (Magnoliopsida). Angiosperms represent approximately 80% of all known living plants.
Synteny
Sequence Homology, Nucleic Acid
Eukaryota
One of the three domains of life (the others being BACTERIA and ARCHAEA), also called Eukarya. These are organisms whose cells are enclosed in membranes and possess a nucleus. They comprise almost all multicellular and many unicellular organisms, and are traditionally divided into groups (sometimes called kingdoms) including ANIMALS; PLANTS; FUNGI; and various algae and other taxa that were previously part of the old kingdom Protista.
Pseudogenes
Genes bearing close resemblance to known genes at different loci, but rendered non-functional by additions or deletions in structure that prevent normal transcription or translation. When lacking introns and containing a poly-A segment near the downstream end (as a result of reverse copying from processed nuclear RNA into double-stranded DNA), they are called processed genes.
Pan troglodytes
Recombination, Genetic
Plants
Multicellular, eukaryotic life forms of kingdom Plantae (sensu lato), comprising the VIRIDIPLANTAE; RHODOPHYTA; and GLAUCOPHYTA; all of which acquired chloroplasts by direct endosymbiosis of CYANOBACTERIA. They are characterized by a mainly photosynthetic mode of nutrition; essentially unlimited growth at localized regions of cell divisions (MERISTEMS); cellulose within cells providing rigidity; the absence of organs of locomotion; absence of nervous and sensory systems; and an alternation of haploid and diploid generations.
Chordata, Nonvertebrate
Genetic Fitness
Evolution, Planetary
Introns
Computational Biology
A field of biology concerned with the development of techniques for the collection and manipulation of biological data, and the use of such data to make biological discoveries or predictions. This field encompasses all computational methods and theories for solving biological problems including manipulation of models and datasets.
Phenotype
Fishes
Genetics, Population
Computer Simulation
Bayes Theorem
A theorem in probability theory named for Thomas Bayes (1702-1761). In epidemiology, it is used to obtain the probability of disease in a group of people with some characteristic on the basis of the overall rate of that disease and of the likelihood of that characteristic in healthy and diseased individuals. The most familiar application is in clinical decision analysis where it is used for estimating the probability of a particular diagnosis given the appearance of some symptoms or test result.
Genes, Duplicate
Drosophila
Models, Molecular
Biogenesis
Chromosome Mapping
Polyploidy
Arthropods
Codon
A set of three nucleotides in a protein coding sequence that specifies individual amino acids or a termination signal (CODON, TERMINATOR). Most codons are universal, but some organisms do not produce the transfer RNAs (RNA, TRANSFER) complementary to all codons. These codons are referred to as unassigned codons (CODONS, NONSENSE).
Ecosystem
Protein Structure, Tertiary
The level of protein structure in which combinations of secondary protein structures (alpha helices, beta sheets, loop regions, and motifs) pack together to form folded shapes called domains. Disulfide bridges between cysteines in two different parts of the polypeptide chain along with other interactions between the chains play a role in the formation and stabilization of tertiary structure. Small proteins usually consist of only one domain but larger proteins may contain a number of domains connected by segments of polypeptide chain which lack regular secondary structure.
DNA, Mitochondrial
Eukaryotic Cells
Drosophila melanogaster
Bacteria
One of the three domains of life (the others being Eukarya and ARCHAEA), also called Eubacteria. They are unicellular prokaryotic microorganisms which generally possess rigid cell walls, multiply by cell division, and exhibit three principal forms: round or coccal, rodlike or bacillary, and spiral or spirochetal. Bacteria can be classified by their response to OXYGEN: aerobic, anaerobic, or facultatively anaerobic; by the mode by which they obtain their energy: chemotrophy (via chemical reaction) or PHOTOTROPHY (via light reaction); for chemotrophs by their source of chemical energy: CHEMOLITHOTROPHY (from inorganic compounds) or chemoorganotrophy (from organic compounds); and by their source for CARBON; NITROGEN; etc.; HETEROTROPHY (from organic sources) or AUTOTROPHY (from CARBON DIOXIDE). They can also be classified by whether or not they stain (based on the structure of their CELL WALLS) with CRYSTAL VIOLET dye: gram-negative or gram-positive.
Chordata
Cloning, Molecular
Retroelements
Elements that are transcribed into RNA, reverse-transcribed into DNA and then inserted into a new site in the genome. Long terminal repeats (LTRs) similar to those from retroviruses are contained in retrotransposons and retrovirus-like elements. Retroposons, such as LONG INTERSPERSED NUCLEOTIDE ELEMENTS and SHORT INTERSPERSED NUCLEOTIDE ELEMENTS do not contain LTRs.
Symbiosis
Reptiles
Amino Acid Substitution
The naturally occurring or experimentally induced replacement of one or more AMINO ACIDS in a protein with another. If a functionally equivalent amino acid is substituted, the protein may retain wild-type activity. Substitution may also diminish, enhance, or eliminate protein function. Experimentally induced substitution is often used to study enzyme activities and binding site properties.
Proteins
Linear POLYPEPTIDES that are synthesized on RIBOSOMES and may be further modified, crosslinked, cleaved, or assembled into complex proteins with several subunits. The specific sequence of AMINO ACIDS determines the shape the polypeptide will take, during PROTEIN FOLDING, and the function of the protein.
Environment
Mutation Rate
Polymorphism, Genetic
The regular and simultaneous occurrence in a single interbreeding population of two or more discontinuous genotypes. The concept includes differences in genotypes ranging in size from a single nucleotide site (POLYMORPHISM, SINGLE NUCLEOTIDE) to large nucleotide sequences visible at a chromosomal level.
Ecology
The branch of science concerned with the interrelationship of organisms and their ENVIRONMENT, especially as manifested by natural cycles and rhythms, community development and structure, interactions between different kinds of organisms, geographic distributions, and population alterations. (Webster's, 3d ed)
Game Theory
Theoretical construct used in applied mathematics to analyze certain situations in which there is an interplay between parties that may have similar, opposed, or mixed interests. In a typical game, decision-making "players," who each have their own goals, try to gain advantage over the other parties by anticipating each other's decisions; the game is finally resolved as a consequence of the players' decisions.
DNA Transposable Elements
Discrete segments of DNA which can excise and reintegrate to another site in the genome. Most are inactive, i.e., have not been found to exist outside the integrated state. DNA transposable elements include bacterial IS (insertion sequence) elements, Tn elements, the maize controlling elements Ac and Ds, Drosophila P, gypsy, and pogo elements, the human Tigger elements and the Tc and mariner elements which are found throughout the animal kingdom.
Cluster Analysis
A set of statistical methods used to group variables or observations into strongly inter-related subgroups. In epidemiology, it may be used to analyze a closely grouped series of events or cases of disease or other health-related phenomenon with well-defined distribution patterns in relation to time or place or both.
Geography
Hybridization, Genetic
Sequence Homology
Dinosaurs
Algorithms
Alleles
Escherichia coli
A species of gram-negative, facultatively anaerobic, rod-shaped bacteria (GRAM-NEGATIVE FACULTATIVELY ANAEROBIC RODS) commonly found in the lower part of the intestine of warm-blooded animals. It is usually nonpathogenic, but some strains are known to produce DIARRHEA and pyogenic infections. Pathogenic strains (virotypes) are classified by their specific pathogenic mechanisms such as toxins (ENTEROTOXIGENIC ESCHERICHIA COLI), etc.
Plant Proteins
Gorilla gorilla
Exons
Models, Theoretical
Archaea
One of the three domains of life (the others being BACTERIA and Eukarya), formerly called Archaebacteria under the taxon Bacteria, but now considered separate and distinct. They are characterized by: (1) the presence of characteristic tRNAs and ribosomal RNAs; (2) the absence of peptidoglycan cell walls; (3) the presence of ether-linked lipids built from branched-chain subunits; and (4) their occurrence in unusual habitats. While archaea resemble bacteria in morphology and genomic organization, they resemble eukarya in their method of genomic replication. The domain contains at least four kingdoms: CRENARCHAEOTA; EURYARCHAEOTA; NANOARCHAEOTA; and KORARCHAEOTA.
DNA
A deoxyribonucleotide polymer that is the primary genetic material of all cells. Eukaryotic and prokaryotic organisms normally contain DNA in a double-stranded state, yet several important biological processes transiently involve single-stranded regions. DNA, which consists of a polysugar-phosphate backbone possessing projections of purines (adenine and guanine) and pyrimidines (thymine and cytosine), forms a double helix that is held together by hydrogen bonds between these purines and pyrimidines (adenine to thymine and guanine to cytosine).
Sex Chromosomes
The homologous chromosomes that are dissimilar in the heterogametic sex. There are the X CHROMOSOME, the Y CHROMOSOME, and the W, Z chromosomes (in animals in which the female is the heterogametic sex (the silkworm moth Bombyx mori, for example)). In such cases the W chromosome is the female-determining and the male is ZZ. (From King & Stansfield, A Dictionary of Genetics, 4th ed)
Pongo pygmaeus
DNA Shuffling
Open Reading Frames
Population Dynamics
Repetitive Sequences, Nucleic Acid
Sequences of DNA or RNA that occur in multiple copies. There are several types: INTERSPERSED REPETITIVE SEQUENCES are copies of transposable elements (DNA TRANSPOSABLE ELEMENTS or RETROELEMENTS) dispersed throughout the genome. TERMINAL REPEAT SEQUENCES flank both ends of another sequence, for example, the long terminal repeats (LTRs) on RETROVIRUSES. Variations may be direct repeats, those occurring in the same direction, or inverted repeats, those opposite to each other in direction. TANDEM REPEAT SEQUENCES are copies which lie adjacent to each other, direct or inverted (INVERTED REPEAT SEQUENCES).
Polymerase Chain Reaction
In vitro method for producing large amounts of specific DNA or RNA fragments of defined length and sequence from small amounts of short oligonucleotide flanking sequences (primers). The essential steps include thermal denaturation of the double-stranded target molecules, annealing of the primers to their complementary sequences, and extension of the annealed primers by enzymatic synthesis with DNA polymerase. The reaction is efficient, specific, and extremely sensitive. Uses for the reaction include disease diagnosis, detection of difficult-to-isolate pathogens, mutation analysis, genetic testing, DNA sequencing, and analyzing evolutionary relationships.
Mating Preference, Animal
DNA Primers
Chromosomes, Plant
Anatomy, Comparative
Host-Parasite Interactions
DNA, Intergenic
Gene Conversion
The asymmetrical segregation of genes during replication which leads to the production of non-reciprocal recombinant strands and the apparent conversion of one allele into another. Thus, e.g., the meiotic products of an Aa individual may be AAAa or aaaA instead of AAaa, i.e., the A allele has been converted into the a allele or vice versa.
Genotype
Smegmamorpha
Group of fish under the superorder Acanthopterygii, separate from the PERCIFORMES, which includes swamp eels, mullets, sticklebacks, seahorses, spiny eels, rainbowfishes, and KILLIFISHES. The name is derived from the six taxa which comprise the group. (From http://www.nanfa.org/articles/Elassoma/elassoma.htm, 8/4/2000)
Prokaryotic Cells
Nematoda
Genome, Human
Brassicaceae
A plant family of the order Capparales, subclass Dilleniidae, class Magnoliopsida. They are mostly herbaceous plants with peppery-flavored leaves, due to gluconapin (GLUCOSINOLATES) and its hydrolysis product butenylisotrhiocyanate. The family includes many plants of economic importance that have been extensively altered and domesticated by humans. Flowers have 4 petals. Podlike fruits contain a number of seeds. Cress is a general term used for many in the Brassicacea family. Rockcress is usually ARABIS; Bittercress is usually CARDAMINE; Yellowcress is usually RORIPPA; Pennycress is usually THLASPI; Watercress refers to NASTURTIUM; or RORIPPA or TROPAEOLUM; Gardencress refers to LEPIDIUM; Indiancress refers to TROPAEOLUM.
Cercopithecidae
Gene Library
Predatory Behavior
Gene Expression Regulation, Developmental
Cetacea
An order of wholly aquatic MAMMALS occurring in all the OCEANS and adjoining seas of the world, as well as in certain river systems. They feed generally on FISHES, cephalopods, and crustaceans. Most are gregarious and most have a relatively long period of parental care and maturation. Included are DOLPHINS; PORPOISES; and WHALES. (From Walker's Mammals of the World, 5th ed, pp969-70)
Expressed Sequence Tags
Genes
Marsupialia
Animal Communication
Photosynthesis
The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide using energy obtained from light rather than from the oxidation of chemical compounds. Photosynthesis comprises two separate processes: the light reactions and the dark reactions. In higher plants; GREEN ALGAE; and CYANOBACTERIA; NADPH and ATP formed by the light reactions drive the dark reactions which result in the fixation of carbon dioxide. (from Oxford Dictionary of Biochemistry and Molecular Biology, 2001)
Butterflies
Binding Sites
Stochastic Processes
Reproduction, Asexual
Lampreys
Altruism
Sex
Cichlids
Sequence Analysis, Protein
Cnidaria
Genetic Code
Fungi
A kingdom of eukaryotic, heterotrophic organisms that live parasitically as saprobes, including MUSHROOMS; YEASTS; smuts, molds, etc. They reproduce either sexually or asexually, and have life cycles that range from simple to complex. Filamentous fungi, commonly known as molds, refer to those that grow as multicellular colonies.
Ants
Insects of the family Formicidae, very common and widespread, probably the most successful of all the insect groups. All ants are social insects, and most colonies contain three castes, queens, males, and workers. Their habits are often very elaborate and a great many studies have been made of ant behavior. Ants produce a number of secretions that function in offense, defense, and communication. (From Borror, et al., An Introduction to the Study of Insects, 4th ed, p676)
Competitive Behavior
Genes, Homeobox
Genes that encode highly conserved TRANSCRIPTION FACTORS that control positional identity of cells (BODY PATTERNING) and MORPHOGENESIS throughout development. Their sequences contain a 180 nucleotide sequence designated the homeobox, so called because mutations of these genes often results in homeotic transformations, in which one body structure replaces another. The proteins encoded by homeobox genes are called HOMEODOMAIN PROTEINS.
Plastids
Chlorophyta
A phylum of photosynthetic EUKARYOTA bearing double membrane-bound plastids containing chlorophyll a and b. They comprise the classical green algae, and represent over 7000 species that live in a variety of primarily aquatic habitats. Only about ten percent are marine species, most live in freshwater.
Drosophila Proteins
Arabidopsis
Genes, Mitochondrial
Transcription Factors
Developmental Biology
Parasites
Saccharomyces cerevisiae
Oryza sativa
Phylogeography
Tetraodontiformes
Diploidy
Models, Statistical
Beetles
Protein Conformation
The characteristic 3-dimensional shape of a protein, including the secondary, supersecondary (motifs), tertiary (domains) and quaternary structure of the peptide chain. PROTEIN STRUCTURE, QUATERNARY describes the conformation assumed by multimeric proteins (aggregates of more than one polypeptide chain).
INDEL Mutation
A mutation named with the blend of insertion and deletion. It refers to a length difference between two ALLELES where it is unknowable if the difference was originally caused by a SEQUENCE INSERTION or by a SEQUENCE DELETION. If the number of nucleotides in the insertion/deletion is not divisible by three, and it occurs in a protein coding region, it is also a FRAMESHIFT MUTATION.
Gene Rearrangement
Opsins
Microsatellite Repeats
DNA, Complementary
X Chromosome
Nucleic Acid Conformation
Gene Regulatory Networks
Interacting DNA-encoded regulatory subsystems in the GENOME that coordinate input from activator and repressor TRANSCRIPTION FACTORS during development, cell differentiation, or in response to environmental cues. The networks function to ultimately specify expression of particular sets of GENES for specific conditions, times, or locations.
Characterization of an amphioxus paired box gene, AmphiPax2/5/8: developmental expression patterns in optic support cells, nephridium, thyroid-like structures and pharyngeal gill slits, but not in the midbrain-hindbrain boundary region. (1/24558)
On the basis of developmental gene expression, the vertebrate central nervous system comprises: a forebrain plus anterior midbrain, a midbrain-hindbrain boundary region (MHB) having organizer properties, and a rhombospinal domain. The vertebrate MHB is characterized by position, by organizer properties and by being the early site of action of Wnt1 and engrailed genes, and of genes of the Pax2/5/8 subfamily. Wada and others (Wada, H., Saiga, H., Satoh, N. and Holland, P. W. H. (1998) Development 125, 1113-1122) suggested that ascidian tunicates have a vertebrate-like MHB on the basis of ascidian Pax258 expression there. In another invertebrate chordate, amphioxus, comparable gene expression evidence for a vertebrate-like MHB is lacking. We, therefore, isolated and characterized AmphiPax2/5/8, the sole member of this subfamily in amphioxus. AmphiPax2/5/8 is initially expressed well back in the rhombospinal domain and not where a MHB would be expected. In contrast, most of the other expression domains of AmphiPax2/5/8 correspond to expression domains of vertebrate Pax2, Pax5 and Pax8 in structures that are probably homologous - support cells of the eye, nephridium, thyroid-like structures and pharyngeal gill slits; although AmphiPax2/5/8 is not transcribed in any structures that could be interpreted as homologues of vertebrate otic placodes or otic vesicles. In sum, the developmental expression of AmphiPax2/5/8 indicates that the amphioxus central nervous system lacks a MHB resembling the vertebrate isthmic region. Additional gene expression data for the developing ascidian and amphioxus nervous systems would help determine whether a MHB is a basal chordate character secondarily lost in amphioxus. The alternative is that the MHB is a vertebrate innovation. (+info)Molecular chaperones: small heat shock proteins in the limelight. (2/24558)
Small heat shock proteins have been the Cinderellas of the molecular chaperone world, but now the crystal structure of a small heat shock protein has been solved and mutation of two human homologues implicated in genetic disease. Intermediate filaments appear to be one of the key targets of their chaperone activity. (+info)Insect evolution: Redesigning the fruitfly. (3/24558)
Homeotic mutations in Drosophila can result in dramatic phenotypes that suggest the possibility for rapid morphological evolution, but dissection of the genetic pathway downstream of Ultrabithorax is beginning to reveal how wing morphology may have evolved by more gradual transformations. (+info)Ultrabithorax function in butterfly wings and the evolution of insect wing patterns. (4/24558)
BACKGROUND: . The morphological and functional evolution of appendages has played a critical role in animal evolution, but the developmental genetic mechanisms underlying appendage diversity are not understood. Given that homologous appendage development is controlled by the same Hox gene in different organisms, and that Hox genes are transcription factors, diversity may evolve from changes in the regulation of Hox target genes. Two impediments to understanding the role of Hox genes in morphological evolution have been the limited number of organisms in which Hox gene function can be studied and the paucity of known Hox-regulated target genes. We have therefore analyzed a butterfly homeotic mutant 'Hindsight', in which portions of the ventral hindwing pattern are transformed to ventral forewing identity, and we have compared the regulation of target genes by the Ultrabithorax (Ubx) gene product in Lepidopteran and Dipteran hindwings. RESULTS: . We show that Ubx gene expression is lost from patches of cells in developing Hindsight hindwings, correlating with changes in wing pigmentation, color pattern elements, and scale morphology. We use this mutant to study how regulation of target genes by Ubx protein differs between species. We find that several Ubx-regulated genes in the Drosophila haltere are not repressed by Ubx in butterfly hindwings, but that Distal-less (Dll) expression is regulated by Ubx in a unique manner in butterflies. CONCLUSIONS: . The morphological diversification of insect hindwings has involved the acquisition of different sets of target genes by Ubx in different lineages. Changes in Hox-regulated target gene sets are, in general, likely to underlie the morphological divergence of homologous structures between animals. (+info)Molecular phylogeny of the ETS gene family. (5/24558)
We have constructed a molecular phylogeny of the ETS gene family. By distance and parsimony analysis of the ETS conserved domains we show that the family containing so far 29 different genes in vertebrates can be divided into 13 groups of genes namely ETS, ER71, GABP, PEA3, ERG, ERF, ELK, DETS4, ELF, ESE, TEL, YAN, SPI. Since the three dimensional structure of the ETS domain has revealed a similarity with the winged-helix-turn-helix proteins, we used two of them (CAP and HSF) to root the tree. This allowed us to show that the family can be divided into five subfamilies: ETS, DETS4, ELF, TEL and SPI. The ETS subfamily comprises the ETS, ER71, GABP, PEA3, ERG, ERF and the ELK groups which appear more related to each other than to any other ETS family members. The fact that some members of these subfamilies were identified in early metazoans such as diploblasts and sponges suggests that the diversification of ETS family genes predates the diversification of metazoans. By the combined analysis of both the ETS and the PNT domains, which are conserved in some members of the family, we showed that the GABP group, and not the ERG group, is the one most closely related to the ETS group. We also observed that the speed of accumulation of mutations in the various genes of the family is highly variable. Noticeably, paralogous members of the ELK group exhibit strikingly different evolutionary speed suggesting that the evolutionary pressure they support is very different. (+info)Anopheles gambiae Ag-STAT, a new insect member of the STAT family, is activated in response to bacterial infection. (6/24558)
A new insect member of the STAT family of transcription factors (Ag-STAT) has been cloned from the human malaria vector Anopheles gambiae. The domain involved in DNA interaction and the SH2 domain are well conserved. Ag-STAT is most similar to Drosophila D-STAT and to vertebrate STATs 5 and 6, constituting a proposed ancient class A of the STAT family. The mRNA is expressed at all developmental stages, and the protein is present in hemocytes, pericardial cells, midgut, skeletal muscle and fat body cells. There is no evidence of transcriptional activation following bacterial challenge. However, bacterial challenge results in nuclear translocation of Ag-STAT protein in fat body cells and induction of DNA-binding activity that recognizes a STAT target site. In vitro treatment with pervanadate (vanadate and H2O2) translocates Ag-STAT to the nucleus in midgut epithelial cells. This is the first evidence of direct participation of the STAT pathway in immune responses in insects. (+info)Analysis of a ubiquitous promoter element in a primitive eukaryote: early evolution of the initiator element. (7/24558)
Typical metazoan core promoter elements, such as TATA boxes and Inr motifs, have yet to be identified in early-evolving eukaryotes, underscoring the extensive divergence of these organisms. Towards the identification of core promoters in protists, we have studied transcription of protein-encoding genes in one of the earliest-diverging lineages of Eukaryota, that represented by the parasitic protist Trichomonas vaginalis. A highly conserved element, comprised of a motif similar to a metazoan initiator (Inr) element, surrounds the start site of transcription in all examined T. vaginalis genes. In contrast, a metazoan-like TATA element appears to be absent in trichomonad promoters. We demonstrate that the conserved motif found in T. vaginalis protein-encoding genes is an Inr promoter element. This trichomonad Inr is essential for transcription, responsible for accurate start site selection, and interchangeable between genes, demonstrating its role as a core promoter element. The sequence requirements of the trichomonad Inr are similar to metazoan Inrs and can be replaced by a mammalian Inr. These studies show that the Inr is a ubiquitous, core promoter element for protein-encoding genes in an early-evolving eukaryote. Functional and structural similarities between this protist Inr and the metazoan Inr strongly indicate that the Inr promoter element evolved early in eukaryotic evolution. (+info)The nuclear receptor superfamily has undergone extensive proliferation and diversification in nematodes. (8/24558)
The nuclear receptor (NR) superfamily is the most abundant class of transcriptional regulators encoded in the Caenorhabditis elegans genome, with >200 predicted genes revealed by the screens and analysis of genomic sequence reported here. This is the largest number of NR genes yet described from a single species, although our analysis of available genomic sequence from the related nematode Caenorhabditis briggsae indicates that it also has a large number. Existing data demonstrate expression for 25% of the C. elegans NR sequences. Sequence conservation and statistical arguments suggest that the majority represent functional genes. An analysis of these genes based on the DNA-binding domain motif revealed that several NR classes conserved in both vertebrates and insects are also represented among the nematode genes, consistent with the existence of ancient NR classes shared among most, and perhaps all, metazoans. Most of the nematode NR sequences, however, are distinct from those currently known in other phyla, and reveal a previously unobserved diversity within the NR superfamily. In C. elegans, extensive proliferation and diversification of NR sequences have occurred on chromosome V, accounting for > 50% of the predicted NR genes. (+info)
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Ancestral reconstruction - Wikipedia
Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer...
Mysteries of Bony Fish Genome Evolution - Healthcanal.com : Healthcanal.com
The monosaccharide transporter gene family in land plants is ancient and shows differential subfamily expression and expansion...
Antievolution.org - Antievolution.org Discussion Board -Topic::Silverswords
Molecular evolutionary rates of oncogenes<...
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Factors underlying rapid reproductive protein evolution in Drosophila
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Molecular Evolution of Viruses by Priyasma Bhoumik
A hybrid micro-macroevolutionary approach to gene tree reconstruction. by Dannie Durand, Bjarni V. Halldórsson et al.
Estimating diversifying selection and functional constraint in the presence of recombination. - Oxford Big Data Institute
Phylogenomics - Wikipedia
Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution...
Symposium: Genome Evolution in
Phylogenomic analyses reveal convergent patterns of adaptive evolution in elephant and human ancestries | PNAS
Evolution of sex chromosomes and sex-biased gene expression | Department of Biology
Molecular evolution of aerobic energy metabolism in primates<...
Genes | Free Full-Text | Ecological and Temporal Constraints in the Evolution of Bacterial Genomes | HTML
Rapid evolution of female-biased, but not male-biased, genes expressed in the avian brain
Comparative transcriptomics of Entelegyne spiders (Araneae, Entelegynae), with emphasis on molecular evolution of orphan genes
Toward More Accurate Ancestral Protein Genotype-Phenotype Reconstructions with the Use of Species Tree-Aware Gene Trees
PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and...
Site-specific time heterogeneity of the substitution process and its impact on phylogenetic inference | BMC Evolutionary...
Minor change, major difference: divergent functions of highly conserved cis-regulatory elements subsequent to whole genome...
Identification of maternally-loaded RNA transcripts in unfertilized eggs of Tribolium castaneum | BMC Genomics | Full Text
Evolution of secretin family GPCR members in the metazoa - NERC Open Research Archive
Difference between revisions of Molecular Systematics Spring 2014 - EEBedia
Difference between revisions of Molecular Systematics Spring 2014 - EEBedia
Genetic purging
Evolution of W. expected only from inbreeding (red line) or from inbreeding and purging (blue line). ... Molecular Ecology. 17: 334-343. doi:10.1111/j.1365-294x.2007.03433.x. PMID 18173505.. ... Crnokrak, P.; Barrett, S. C. H. (2002). "Purging the genetic load: a review of the experimental evidence". Evolution. 56: 2347- ... Glémin, S (2003). "How are deleterious mutations purged? Drift versus nonrandom mating". Evolution. 57: 2678-2687. doi:10.1111/ ...
Directional selection
Molecular evolution. Natural selection. *Balancing selection. *Directional selection. *Disruptive selection. *Negative ... Genetic Drift in Phenotypic Evolution Using Quantitative Trait Locus Data". Genetics. 149 (4): 2099-2104. PMC 1460271. PMID ... Hurst, Laurence D (2002). "The Ka/Ks ratio: diagnosing the form of sequence evolution". Trends in Genetics. Elsevier BV. 18 (9 ...
Balancing selection
"An altitudinal transect of Drosophila robusta". Evolution 1, 237-48. *^ Dobzhansky T. 1970. Genetics of the evolutionary ... Evolution, 63: 2213-2221. doi:10.1111/j.1558-5646.2009.00711.x *^ Ford E.B. 1965. Genetic polymorphism, p26, Heterozygous ... Molecular evolution. Natural selection. *Balancing selection. *Directional selection. *Disruptive selection. *Negative ... The Driving Forces of Evolution: Genetic Processes in Populations. 80-82. *^ Koskella, B. and Lively, C. M. (2009), EVIDENCE ...
Epistasis
"Viral quasispecies evolution". Microbiology and Molecular Biology Reviews. 76 (2): 159-216. doi:10.1128/mmbr.05023-11. PMC ... Evolution of sexual reproduction. References[edit]. *^ Gros PA, Le Nagard H, Tenaillon O (May 2009). "The evolution of ... Evolution of sex[edit]. Main article: evolution of sexual reproduction. Negative epistasis and sex are thought to be intimately ... Evolution; International Journal of Organic Evolution. 59 (6): 1165-74. doi:10.1111/j.0014-3820.2005.tb01768.x. JSTOR 3448895. ...
Cnidaria
Molecular Phylogenetics & Evolution. 62 (1): 329-45. doi:10.1016/j.ympev.2011.10.008. PMID 22040765.. ... Molecular biology and evolution. Oxford University Press, Oxford 12.1995, p. 679. ISSN 0737-4038 ... "Genome Biology and Evolution. 4 (1): 52-58. doi:10.1093/gbe/evr127. PMC 3268669. PMID 22117085.. ... D. Bridge, C. W. Cunningham, R. DeSalle, L. W. Buss: Class-level relationships in the phylum Cnidaria-Molecular and ...
Lark sparrow
Molecular Phylogenetics & Evolution. vol 29, no 1. pp. 43-57.. *Charlton TD. (1995). Lark Sparrow in Suffolk: New to the ...
Holozoa
Steenkamp, Emma T.; Wright, Jane; Baldauf, Sandra L. (January 2006). "The Protistan Origins of Animals and Fungi". Molecular ... "Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals and Fungi". Current Biology. 25 (18): ... "Estimating the timing of early eukaryotic diversification with multigene molecular clocks". Proceedings of the National ... Biology & Evolution. 23 (1): 93-106. doi:10.1093/molbev/msj011. PMID 16151185.. ...
Ka/Ks ratio
"Molecular Biology and Evolution. 31 (1): 212-231. doi:10.1093/molbev/mst192. PMC 3879453 . PMID 24129904.. ... "Molecular Biology & Evolution. 26 (11): 2595-2603. doi:10.1093/molbev/msp175. PMC 2912466 . PMID 19661199.. ... Yang, Z.; Bielawski, J. P. (2000). "Statistical methods for detecting molecular adaptation". Trends in Ecology & Evolution. 15 ... Molecular Biology and Evolution. 22 (5): 1208-22. doi:10.1093/molbev/msi105. PMID 15703242.. ...
Starling
1990). Distribution and taxonomy of the birds of the world: A Study in Molecular Evolution. Yale University Press, New Haven, ... Molecular Phylogenetics & Evolution. 47 (1): 251-260. doi:10.1016/j.ympev.2008.01.020. PMID 18321732. Archived from the ... Molecular Phylogenetics and Evolution. 41 (2): 333-344. doi:10.1016/j.ympev.2006.05.007. PMID 16806992.. ... Molecular Phylogenetics and Evolution. 32 (1): 264-273. doi:10.1016/j.ympev.2003.12.002. PMID 15186812.. ...
Cnidaria
Molecular Phylogenetics & Evolution. 62 (1): 329-45. doi:10.1016/j.ympev.2011.10.008. PMID 22040765.. ... Molecular biology and evolution. Oxford University Press, Oxford 12.1995, p. 679. ISSN 0737-4038 ... D. Bridge, C. W. Cunningham, R. DeSalle, L. W. Buss: Class-level relationships in the phylum Cnidaria-Molecular and ... "Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. 146 (1): 9-25. doi:10.1016/j.cbpa.2006.09. ...
Water deer
Molecular Biology and Evolution. 14 (11): 1154-1166. doi:10.1093/oxfordjournals.molbev.a025725. ISSN 0737-4038. PMID 9364773.. ...
Pickerel frog
Molecular Phylogenetics and Evolution. 34 (2): 299-314. doi:10.1016/j.ympev.2004.10.007. PMID 15619443. Archived from the ... Molecular Phylogenetics and Evolution. 42 (2): 331-338. doi:10.1016/j.ympev.2006.08.001. PMID 16997582.. ...
Whale
Molecular Biology and Evolution. 14 (5): 537-543. doi:10.1093/oxfordjournals.molbev.a025790. PMID 9159931.. ... Whitehead, H. (2003). Sperm Whales: Social Evolution in the Ocean. Chicago: University of Chicago Press. p. 4. ISBN 978-0-226- ... Main article: Evolution of cetaceans. Whales are descendants of land-dwelling mammals of the artiodactyl order (even-toed ... "The Convergent Evolution of Marine Fish and Whales". The University of Arizona. Retrieved 17 January 2017.. ...
Ophiocordyceps sinensis
Molecular Phylogenetics and Evolution. 44 (3): 1204-1223. doi:10.1016/j.ympev.2007.03.011. PMID 17555990.. ... Paecilomyces sinensis and Sporothrix insectorum are discarded based on the molecular evidence. P. lingi appeared only in one ... Liu Z.; Liang Z.; Liu A.; Yao Y.; Hyde K. D.; Yu Z. (2002). "Molecular evidence for teleomorph-anamorph connections in ... when molecular analysis was used to emend the classification of the Cordycipitaceae and the Clavicipitaceae, resulting in the ...
Hoa people
"Molecular Biology and Evolution. 37 (9): 2503-2519. doi:10.1093/molbev/msaa099. PMC 7475039. PMID 32344428.. ... Stratton, Eric (2002). Evolution Of Indian Stupa Architecture In East Asia (illustrated ed.). Vedams eBooks (P) Ltd. ISBN ... Stratton (2002), p. 54 Evolution Of Indian Stupa Architecture In East Asia, p. 54, at Google Books ...
Parrot
"Molecular Biology and Evolution. 25 (10): 2141-2156. doi:10.1093/molbev/msn160. PMC 2727385. PMID 18653733.. ... 2011). "The evolutionary history of cockatoos (Aves: Psittaciformes: Cacatuidae)". Molecular Phylogenetics and Evolution. 59 (3 ... Molecular Phylogenetics and Evolution. 36 (3): 706-721. doi:10.1016/j.ympev.2005.03.013. PMID 16099384.. ... Molecular Phylogenetics and Evolution. 59 (3): 675-684. doi:10.1016/j.ympev.2011.03.017. PMID 21453777.. ...
Indian rhinoceros
"Molecular Biology and Evolution. 13 (9): 1167-1173. doi:10.1093/oxfordjournals.molbev.a025681. PMID 8896369.. ... Evolution[edit]. Main article: Rhinoceros § Evolution. Ancestral rhinoceroses first diverged from other perissodactyls in the ... Molecular Phylogenetics and Evolution. 19 (1): 34-44. doi:10.1006/mpev.2000.0903. PMID 11286489.. ... The Indian Rhinoceros is known from Early Pleistocene localities in Java, South China, India and Pakistan.[12] Molecular ...
Bird of prey
"Molecular Phylogenetics and Evolution. 35 (1): 147-164. doi:10.1016/j.ympev.2004.10.003. PMID 15737588.. ... Molecular Phylogenetics and Evolution. 37 (2): 327-346. doi:10.1016/j.ympev.2005.04.010. PMID 15925523.. ... Molecular Phylogenetics and Evolution. 53 (3): 703-715. doi:10.1016/j.ympev.2009.07.020. PMID 19635577.. ... 2003). "Evolution of long-distance migration in and historical biogeography of Catharus thrushes: a molecular phylogenetic ...
Peroxisome
Molecular Biology and Evolution. 23 (4): 838-45. doi:10.1093/molbev/msj103. PMID 16452116.. ... Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P (2002). "Chapter 12: Peroxisomes". Molecular Biology of the Cell ( ... Certain enzymes within the peroxisome, by using molecular oxygen, remove hydrogen atoms from specific organic substrates ( ... "Origin and evolution of the peroxisomal proteome". Biology Direct. 1: 8. doi:10.1186/1745-6150-1-8. PMC 1472686. PMID 16556314 ...
California condor
Phylogeny and Classification of Birds: A Study in Molecular Evolution. Yale University Press. ISBN 0-300-04085-7. Accessed ... Molecular Biology and Evolution. 24 (1): 269-280. CiteSeerX 10.1.1.106.1680. doi:10.1093/molbev/msl158. PMID 17062634.. ... "A preliminary survey of trends in avian evolution from Pleistocene to recent time" (PDF). Condor. 49 (1): 10-13. doi:10.2307/ ... "Diversification of Neoaves: integration of molecular sequence data and fossils" (PDF). Biology Letters. 2 (4): 1-5. doi ...
Honey bee
Molecular Phylogenetics and Evolution. 37 (1): 25-35. doi:10.1016/j.ympev.2005.02.017. PMID 16182149.. Maria C. Arias; Walter S ... "Molecular Phylogenetics and Evolution. 40 (1): 315. doi:10.1016/j.ympev.2006.02.002.. ... "Ecology and Evolution. 8 (1): 441-451. doi:10.1002/ece3.3597. PMC 5756847. PMID 29321884.. ... Crane E (1990). "Honey from honeybees and other insects". Ethology Ecology & Evolution. 3 (sup1): 100-105. doi:10.1080/ ...
RNA world
"Journal of Molecular Evolution. 73 (1-2): 10-22. Bibcode:2011JMolE..73...10E. doi:10.1007/s00239-011-9453-4. PMC 3223571. PMID ... Orgel LE (Dec 1968). "Evolution of the genetic apparatus". Journal of Molecular Biology. 38 (3): 381-93. doi:10.1016/0022-2836( ... White HB (Mar 1976). "Coenzymes as fossils of an earlier metabolic state". Journal of Molecular Evolution. 7 (2): 101-4. ... It was produced by molecular competition (in vitro evolution) of candidate enzyme mixtures.[62] ...
Romani people
"Molecular Biology and Evolution. 22 (10): 1964-75. doi:10.1093/molbev/msi185. PMID 15944443.. ...
Vitamin C
Yang H (2013). "Conserved or lost: molecular evolution of the key gene GULO in vertebrate vitamin C biosynthesis". Biochemical ... Molecular Biology and Evolution. 28 (2): 1025-31. doi:10.1093/molbev/msq286. PMID 21037206.. ... Molecular Phylogenetics and Evolution. 9 (3): 585-598. doi:10.1006/mpev.1998.0495. PMID 9668008.. ... Evolution[edit]. Ascorbic acid is a common enzymatic cofactor in mammals used in the synthesis of collagen, as well as a ...
Entolomataceae
Molecular Phylogenetics and Evolution. Amsterdam: Elsevier. 33 (2): 501-515. doi:10.1016/j.ympev.2004.06.007. PMID 15336682. ... "Molecular phylogeny and spore evolution of Entolomataceae" (PDF). Persoonia. Leiden & Utrecht: National Herbarium of The ... based on morphological and molecular evidence" (PDF). North American Fungi. 6 (12): 1-19. doi:10.2509/naf2011.006.012.. ...
Haplogroup Q-M242
Molecular Biology and Evolution. 21 (1): 164-75. doi:10.1093/molbev/msh009. PMID 14595095.. ... Molecular Biology and Evolution. 28 (1): 717-27. doi:10.1093/molbev/msq247. PMID 20837606.. ... Molecular Biology and Evolution. 21 (1): 164-75. doi:10.1093/molbev/msh009. PMID 14595095.. ... Molecular Biology and Evolution Advance Access publication December 2, 2014. doi:10.1093/molbev/msu327 ...
Paleontology
Page, R.D.M & Holmes, E.C. (1998). Molecular Evolution: A Phylogenetic Approach. Oxford: Blackwell Science. p. 2. ISBN 0-86542- ... Russell Garwood & Gregory Edgecombe (2011). "Early terrestrial animals, evolution and uncertainty". Evolution, Education, and ... Hug, L.A. & Roger, A.J. (2007). "The Impact of Fossils and Taxon Sampling on Ancient Molecular Dating Analyses". Molecular ... "A molecular timescale of eukaryote evolution and the rise of complex multicellular life". BMC Evolutionary Biology. 4: 2. doi: ...
Formica rufa
Molecular Phylogenetics and Evolution. 32 (1): 198-206. doi:10.1016/j.ympev.2003.11.016. PMID 15186807.. ... Through evolution, polygyny may have arisen through monogyny. One possibility is that monogynous nests due to environmental and ...
Many-banded krait
Molecular Phylogenetics and Evolution. 8 (3): 349-62. CiteSeerX 10.1.1.324.3013. doi:10.1006/mpev.1997.0434. PMID 9417893.. ... 2000). Snakes: The Evolution of Mystery in Nature. University of California Press. p. 221. ISBN 978-0-520-22487-2. .. ...
Calabash
Molecular Biology and Evolution. 23 (5): 893-900. doi:10.1093/molbev/msj092. PMID 16401685.. ...
人類基因組 - 维基百科,自由的百科全
Watson, JD, Baker TA, Bell SP, Gann A, Levine M, Losick R. (2004). "Ch9-10", Molecular Biology of the Gene, 5th ed., Peason ... Olson M, Varki A. Sequencing the chimpanzee genome: insights into human evolution and disease.. Nat Rev Genet. 2003, 4 (1): 20- ...
Craniosynostosis
"Human Molecular Genetics. 6 (10): 1647-56. doi:10.1093/hmg/6.10.1647. PMID 9300656.. ... Francel PC (1995). "Evolution of the treatment for sagittal synostosis: a personal record". In Goodrich JT, Hall CD (eds.). ... Part A, Clinical and Molecular Teratology. 82 (2): 78-85. doi:10.1002/bdra.20426. PMID 18050313.. ... Advances in the fields of molecular biology and genetics, as well as the use of animal models have been of great importance in ...
Spottefuglar
Molecular Phylogenetics and Evolution 41(2): 333-344.. *McClure, H. Elliott (1991). in Forshaw, Joseph: Encyclopaedia of ... 1990): Distribution and taxonomy of the birds of the world: A Study in Molecular Evolution. Yale University Press, New Haven, ... Hunt, Jeffrey S.; Bermingham, Eldredge; & Ricklefs, Robert E. (2001): Molecular systematics and biogeography of Antillean ...
Eating
Aestivation: Molecular and Physiological Aspects. Springer-Verlag. pp. 95-113. doi:10.1007/978-3-642-02421-4. ISBN 978-3-642- ... "Energetics and the evolution of body size in small terrestrial mammals" (PDF). Symposia of the Zoological Society of London ... "Déjà vu: the evolution of feeding morphologies in the Carnivora". Integrative and Comparative Biology. 47 (1): 147-163. doi ...
Miocene
Due to scanty fossil evidence it is unclear which ape or apes contributed to the modern hominid clade, but molecular evidence ... Marine deposits showcase a variety of cetaceans and penguins, illustrating the evolution of both groups into modern ... Zhisheng, An; Kutzbach, John E.; Prell, Warren L.; Porter, Stephen C. (3 May 2001). "Evolution of Asian monsoons and phased ... "Dynamic topography control on Patagonian relief evolution as inferred from low temperature thermochronology". Earth and ...
Quantitative trait locus
As Mendel's ideas spread, geneticists began to connect Mendel's rules of inheritance of single factors to Darwinian evolution. ... Methods in Molecular Biology, Springer US, pp. 15-25, doi:10.1007/978-1-4939-9865-4_3, ISBN 9781493998654. , PMID 31541435. ... Still, it would be almost thirty years until the theoretical framework for evolution of complex traits would be widely ... Castle's was perhaps the first attempt made in the scientific literature to direct evolution by artificial selection of a trait ...
Nespecifična monooksigenaza
Eric J. Toone (2006). Advances in Enzymology and Related Areas of Molecular Biology, Protein Evolution (Volume 75 izd.). Wiley- ... Nicholas C. Price, Lewis Stevens (1999). Fundamentals of Enzymology: The Cell and Molecular Biology of Catalytic Proteins ( ... Gerhard Michal, Dietmar Schomburg (2012). Biochemical Pathways: An Atlas of Biochemistry and Molecular Biology (2nd izd.). ...
UDP-N,N'-diacetilbacilozaminska 2-epimeraza (hidroliza)
Eric J. Toone (2006). Advances in Enzymology and Related Areas of Molecular Biology, Protein Evolution (Volume 75 izd.). Wiley- ... Nicholas C. Price, Lewis Stevens (1999). Fundamentals of Enzymology: The Cell and Molecular Biology of Catalytic Proteins ( ... Gerhard Michal, Dietmar Schomburg (2012). Biochemical Pathways: An Atlas of Biochemistry and Molecular Biology (2nd izd.). ...
Eurasian magpie
Molecular Phylogenetics and Evolution. 65 (2): 562-572. doi:10.1016/j.ympev.2012.07.011. PMID 22842292.. ... Molecular Phylogenetics and Evolution. 29 (2): 250-257. doi:10.1016/S1055-7903(03)00096-4. PMID 13678680.. ... Emery, Nathan J.; Clayton, Nicola S. (Dec 2004). "The mentality of crows: convergent evolution of intelligence in corvids and ...
Hipoteza latających naczelnych, wolna encyklopedia
Molecular Phylogenetics and Evolution". 1 (2), s. 148-146, 1992. DOI: 10.1016/1055-7903(92)90026-D. PMID: 1342928 (ang.). ... Molecular Biology and Evolution". 22 (9), s. 1869-86, 09-2005. DOI: 10.1093/molbev/msi180. PMID: 15930153 (ang.). ... Stanhope MJ, Czelusniak J, Si JS, Nickerson J, Goodman M. A molecular perspective on mammalian evolution from the gene encoding ... Primitive Early Eocene bat from Wyoming and the evolution of flight and echolocation (ang.). W: Nature [on-line]. 2008-02-14. [ ...
Streptococcus pneumoniae
Engelmoer DJ, Rozen DE (December 2011). "Competence increases survival during stress in Streptococcus pneumoniae". Evolution. ... Avery's work marked the birth of the molecular era of genetics.[14] ... advances in next-generation sequencing and comparative genomics have enabled the development of robust and reliable molecular ...
Vinca alkaloid
Raviña, Enrique (2011). "Vinca alkaloids". The evolution of drug discovery: From traditional medicines to modern drugs. John ... Molecular Engineering. 1 (2): 153-160. doi:10.1007/BF00420051.. ...
Sensitization
Shettleworth, S. J. (2010). Cognition, Evolution and Behavior (2nd ed.). New York: Oxford.. .mw-parser-output cite.citation{ ... Molecular Neuropharmacology: A Foundation for Clinical Neuroscience (2nd ed.). New York: McGraw-Hill Medical. pp. 364-375. ISBN ... as ΔFosB accumulates with repeated drug exposure it represses c-Fos and contributes to the molecular switch whereby ΔFosB is ...
Leaf
2004). The Evolution of Plant Physiology. Academic Press. ISBN 978-0-08-047272-0. .. ... On the basis of molecular genetics, Eckardt and Baum (2010) concluded that "it is now generally accepted that compound leaves ... In the course of evolution, leaves have adapted to different environments in the following ways:[citation needed] ... Stewart, Wilson N; Rothwell, Gar W. (1993) [1983]. Paleobotany and the Evolution of Plants (2nd ed.). Cambridge University ...
Ebola
Klenk, Hans-Dieter; Feldmann, Heinz (2004). Ebola and Marburg viruses: molecular and cellular biology (Limited preview). ... and rapid evolution death after a mean of three days."[163] ... Trends in Molecular Medicine. 12 (5): 206-15. doi:10.1016/j. ...
Mallard
"Molecular Phylogenetics and Evolution. 70: 402-411. doi:10.1016/j.ympev.2013.08.008. ISSN 1095-9513. PMID 23994490.. ... "Frontiers in Ecology and Evolution. 5. doi:10.3389/fevo.2017.00025. ISSN 2296-701X.. ... McCracken, Kevin G.; Johnson, William P.; Sheldon, Frederick H. (2001). "Molecular population genetics, phylogeography, and ... Molecular Ecology (published January 2013). 22 (1): 41-55. doi:10.1111/mec.12098. PMID 23110616.. ...
Mandala
Hasegawa, Masami (2017). "Phylogeny mandalas for illustrating the Tree of Life". Molecular Phylogenetics and Evolution. 117: ... Cowen, Painton (2005). The Rose Window, London and New York, (offers the most complete overview of the evolution and meaning of ...
Chloroplast DNA
Molecular Biology and Evolution. 28 (1): 407-22. doi:10.1093/molbev/msq209. PMID 20702568.. ... Molecular structureEdit. The 154 kb chloroplast DNA map of a model flowering plant (Arabidopsis thaliana: Brassicaceae) showing ... "Genome Biology and Evolution. 10 (10): 2669-2571. doi:10.1093/gbe/evy189. PMC 6166771. PMID 30165616.. ... Alberts B (2002). Molecular biology of the cell (4. ed.). New York [u.a.]: Garland. ISBN 978-0-8153-4072-0. .. ...
Piculet
Molecular Phylogenetics and Evolution 40: 389-399. doi:10.1016/j.ympev.2006.02.021 PMID 16635580 (HTML abstract) ... Systematics and evolutionEdit. Although not well known from fossils, the evolution of piculets is now considered rather ... Molecular dating, calibrated with geographic events in the absence of a good fossil record, points at the Late Miocene, c. 8 ... Fuchs, J.; Ohlson, J. I.; Ericson, Per G. P. & Pasquet, E. (2006): Molecular phylogeny and biogeographic history of the ...
Darwin Medal - Simple English Wikipedia, the free encyclopedia
Distinguished for his work on molecular evolution, in particular on the role of stochastic events in determining the rate of ... This means evolution, population biology, organismal biology and biological diversity. It was first awarded in 1890. It comes ... They have combined molecular and genetic approaches to answer some of Darwins key questions about the natural variation of ... for their fundamental work on the ecology, breeding and evolution of Darwin's finches on the Galapagos islands. This work has ...
Abortion - Simple English Wikipedia, the free encyclopedia
"Human Evolution (Netherlands: Springer) 3 (4): 297-308. ISSN (Print) 1824-310X (Online) 0393-9375 (Print) 1824-310X (Online). ... Russo J, Russo I (1987). "Biological and molecular bases of mammary carcinogenesis". Laboratory Investigation 57 (2): 112-37. ...
Octopus
Evolution. Further information: Evolution of cephalopods. Fossil history and phylogeny. Cephalopods have existed for 500 ... The California two-spot octopus has had its genome sequenced, allowing exploration of its molecular adaptations.[151] Having ... Hence, greater transcriptome plasticity has come as the cost of slower genome evolution. High levels of RNA editing do not ... Strugnell, J.; Nishiguchi, M. K. (2007). "Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) inferred from ...
Brolga
The brolga was formerly placed in the genus Grus but a molecular phylogenetic study published in 2010 found that the genus, as ... Evolution. *Origin of birds. *Origin of flight. *Evolution of birds. *Darwin's finches ... This was further confirmed by molecular studies of their DNA.[6] These also showed that the brolga is more closely related to ...
Caulobacter crescentus
The evolution of stalk positioning in the Caulobacter cladeEdit. Diverse positioning of the stalks. Caulobacter crescentus ( ... "Journal of Molecular Biology. 409 (1): 28-35. doi:10.1016/j.jmb.2011.02.041. PMC 3108490. PMID 21371478.. ... Detailed study of the molecular development of these cells as they progress through the cell cycle has enabled researchers to ... The "housekeeping" metabolic and catabolic subsystems provide the energy and the molecular raw materials for protein synthesis ...
Medicine
... and the development of techniques in molecular biology, evolution, and genetics are influencing medical technology, practice ... Molecular biology is the study of molecular underpinnings of the process of replication, transcription and translation of the ... Many modern molecular tests such as flow cytometry, polymerase chain reaction (PCR), immunohistochemistry, cytogenetics, gene ... Genomics and knowledge of human genetics and human evolution is having increasingly significant influence on medicine, as the ...
Passerine - Simple English Wikipedia, the free encyclopedia
Evolution[change , change source]. Evidence on their evolution comes from comparative anatomy, the fossil record and molecular ...
Pinophyta
The evolution of bird-dispersed pines. Evolutionary Ecology 4: 185-219 *^ a b "South Island wilding conifer strategy". ... A new classification and linear sequence based on molecular data can be found in an article by Christenhusz et al.[7] ... a b c Henry, R.J.(2005) Plant Diversity and evolution. London: CABI. ... Phylogeny of the Pinophyta based on cladistic analysis of molecular data.[5] ...
Nucleomorph
"Genome Biology and Evolution. 6 (4): 974-980. doi:10.1093/gbe/evu071. ISSN 1759-6653. PMC 4007541 . PMID 24709562.. ... Studies of the genomic organization and of the molecular phylogeny have shown that the nucleomorph of the cryptomonads used to ... Archibald, John M (2007). "Nucleomorph Genomes: Structure, Function, Origin and Evolution". BioEssays. 29 (4): 392-402. doi: ...
Molecular Phylogenetics and Evolution
... is dedicated to bringing Darwins dream within grasp - to have fairly true genealogical ... Special issues published in Molecular Phylogenetics and Evolution. * 25th Anniversary Issue of Molecular Phylogenetics and ... understanding of the mechanisms and processes of molecular evolution should lead to more accurate models of molecular evolution ... Molecular Phylogenetics and Evolution is dedicated to bringing Darwins dream within grasp - to have fairly true genealogical ...
Molecular Evolution | Encyclopedia.com
Molecular All life on Earth [1] is cellular and uses DNA to store genetic information. However, evidence suggests that, on ... Evolution, Molecular Genetics Copyright Genetics Society of America. Evolution, Molecular. All life on Earth is cellular and ... "Directed Molecular Evolution." Scientific American 267 (Dec. 1992): 90-97. Orgel, Leslie E. "Molecular Replication." Nature 358 ... According to the neutral mutation theory of molecular evolution, the variability at the molecular level which results from ...
Evolution - A-Z - Molecular evolution
Molecular Research, Evolution Are Topics - latimes
Evolution and the Molecular Revolution, on Friday at UCLA.An international roster of ... New discoveries about the molecular bases of the evolution of life will be explored in a one-day symposium, ... New discoveries about the molecular bases of the evolution of life will be explored in a one-day symposium, "Evolution and the ... how the molecular revolution began, biomedical research and genes, sequences and other molecular clues to the history of life. ...
Evolution - Molecular evolution and neutral theory
The neutralist view of evolution suggests that, of all these possible molecules, the great majority would fail to carry oxygen ... Evolution consists of the substitution of one variant for another when the environment changes. ... What we observe as evolution consists of shuffling round within this limited set of equivalent sequences. ...
Evolution: Library: Molecular Evolution: Neutral Drift
... "molecular evolution." The molecular evolution of an organism can be very different from its morphological (body features) ... Two hypotheses have been put forward to explain these molecular changes. One hypothesis suggests that most molecular evolution ... We can observe molecular evolution in DNA, and also in amino acid changes in proteins. This table (page 4 of the document) ... Credits: From The Neutral Theory of Molecular Evolution, by Motoo Kimura. Reprinted with the permission of Cambridge University ...
Molecular evolution (Book, 1997) [WorldCat.org]
Molecular evolution. [Wen-Hsiung Li] -- This book represents the authors effort to provide a synthesis of the exciting ... developments in molecular evolution in the past two decades. It describes the dynamics of evolutionary change at the ... ... molecular> # Evolution, Molecular a schema:Intangible ;. schema:name "Evolution, Molecular"@en ;. . ... Molecular evolution a schema:Intangible ;. schema:name "Molecular evolution"@en ;. . ...
molecular evolution
... do14 David_A_OBROCHTA at UMAIL.UMD.EDU Tue Oct 18 14:47:33 EST 1994 *Previous message: Marine molecular ... Postdoctoral Research Fellow In Molecular Evolution Dr. David OBrochta, University of Maryland Biotechnology Institute, Center ... wishes to sponsor highly qualified recent Ph.D.s interested in applying for a postdoctoral fellowships in Molecular Evolution ... OBrochtaUs laboratory is adjacent to a large molecular systematics laboratory ion of DNA from know species of heliothines is ...
Marine molecular evolution
... Howard Lasker biolask at ubvms.cc.buffalo.edu Tue Oct 18 08:34:00 EST 1994 *Previous message: ... Speciation in abalone is linked to the molecular evolution of sperm lysin. Steven Palumbi - University of Hawaii Evolution of ... Dear Colleague, We are organizing a Keystone Symposium entitled, Molecular Approaches to Marine Ecology and Evolution. The ... MOLECULAR APPROACHES TO MARINE ECOLOGY AND EVOLUTION INTRODUCTION Howard R. Lasker - SUNY at Buffalo Introductory remarks - ...
Statistical Methods in Molecular Evolution | Rasmus Nielsen | Springer
With the availability of genomic data from multiple related species, molecular evolution has become one of the most active and ... inferences about past evolutionary events are made using molecular data from currently living species. ... In the field of molecular evolution, inferences about past evolutionary events are made using molecular data from currently ... This book is suitable for statisticians seeking to learn more about applications in molecular evolution and molecular ...
Molecular Basis of Virus Evolution - Cambridge University Press
Molecular Basis of Virus Evolution, Edited by Adrian J. Gibbs, Charles H. Calisher, Fernando García-Arenal, 9780521022897, ... Genetic variation and evolution of satellite viruses and satellite RNAs G. Kurath and C. Robaglia; 27. Molecular evolution of ... Molecular evolution of papillomaviruses Marc Van Ranst, Jeffrey B. Kaplan, John P. Sundberg and Robert D. Burk; 32. Molecular ... Evolution of alphaviruses Scott C. Weaver; 34. Evolution of influenza viruses: rapid evolution and stasis R. G. Webster, W. J. ...
Molecular Evolution of the Lysine Biosynthetic Pathways | SpringerLink
Evolution and molecular Lego
I have often neglected to consider evolution when trying to understand the molecular basis of a given cellular process. ... Molecular Lego As we obtain more and more protein structures, we see that certain folds are used to achieve distantly related ... Brodsky added, "Molecular cell biologists interested in the evolutionary origins of pathways we study can learn a lot from ... for Biochemistry and Molecular Biology. 11200 Rockville Pike, Suite 302, Rockville, MD 20852. 240-283-6614 , [email protected] ...
Molecular evolution of the synapsin gene family. - PubMed - NCBI
Molecular evolution of the synapsin gene family.. Kao HT1, Porton B, Hilfiker S, Stefani G, Pieribone VA, DeSalle R, Greengard ... Laboratory of Molecular and Cellular Neuroscience, The Rockefeller University, New York, New York 10021, USA. [email protected] ... In invertebrate synapsins, the most conserved domains are C and E. During the evolution of vertebrates, at least two gene ... Synapsins possess multiple domains, which have evolved at different rates throughout evolution. ...
The Neutral Theory of Molecular Evolution | Genetics
1992 The nearly neutral theory of molecular evolution. Annu. Rev. Ecol. Syst. 23: 263-286. ... 1983 The Neutral Theory of Molecular Evolution. Cambridge University Press, New York. ... Their monograph remains as the earliest landmark in the history of molecular evolution. Hemin crystals obtained from different ... The concept that each protein from each species of animal was a single chemical substance at the molecular level was implicit ...
Chromatin Evolution and Molecular Drive in Speciation
Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei | Nature Communications
Experimental evolution reveals that under fluoroquinolone exposure in vitro, resistant S. sonnei develops further intolerance ... Here the authors analyse nearly 400 S. sonnei genome sequences and carry out experimental evolution experiments to shed light ... Reductive evolution in CenAsiaIII S. sonnei Reductive evolution has played an important role in shaping the long-term evolution ... Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei. *Hao Chung The ORCID: orcid.org/0000-0002-4028 ...
Evolution, Molecular | Journal of Bacteriology
POPULATION GENETICS AND EVOLUTION. Molecular Evolution of the Helicobacter pylori Vacuolating Toxin Gene vacA Kelly A. Gangwer ... POPULATION GENETICS AND EVOLUTION. Evolution and Population Structure of Salmonella enterica Serovar Newport Vartul Sangal, ... POPULATION GENETICS AND EVOLUTION. Genomic Identification of a Novel Mutation in hfq That Provides Multiple Benefits in ... The Citrobacter rodentium Genome Sequence Reveals Convergent Evolution with Human Pathogenic Escherichia coli Nicola K. Petty, ...
Antagonistic coevolution accelerates molecular evolution
... should drive molecular evolution through continual natural selection for adaptation and counter-adaptation. Although the ... Antagonistic coevolution accelerates molecular evolution Nature. 2010 Mar 11;464(7286):275-8. doi: 10.1038/nature08798. Epub ... that the rate of molecular evolution in the phage was far higher when both bacterium and phage coevolved with each other than ... should drive molecular evolution through continual natural selection for adaptation and counter-adaptation. Although the ...
Protein Structure and Molecular Evolution
... stability and binding affinities in phylogenetic evolution and causation of human disease. ... Neutral theory of molecular evolution - (https://en.wikipedia.org/wiki/Neutral_theory_of_molecular_evolution) ... Biological evolution employs genetic alterations or mutations as its basic working material. The current study of molecular ... Fruit Fly Neurons Hold Key to Molecular Causes of Mental Diseases. A neuron is a cell that processes and transmits information ...
Molecular evolution of rifampicin resistance in Streptococcus pneumoniae. - PubMed - NCBI
Molecular Evolution: Towards the Origin of Metazoa | SpringerLink
... new genes and their proteins that revealed striking new insights into the early evolution of multicellular animals have been ... Sponges (Porifera) Molecular Model Systems to Study Cellular Differentiation in Metazoa W. E. G. Müller, C. Wagner, C. C. ... amino acid apoptosis cell cellular differentiation classification evolution genome membrane mitochondria primary structure ... Evolution of Early Metazoa: Phylogenetic Status of the Hexactinellida Within the Phylum of Porifera (Sponges) ...
Molecular Evidence to Support Evolution | HubPages
Molecular Machine Protein Import by Mitochondria If a cell is irreducibly complex, this means that if the component parts are ... What is Evolution?. Evolution is a gradual process in which a biological organism changes into a different and usually more ... Recently in 2009, however, scientists have been able to show that a cell is composed of "molecular machines." These molecular ... Evolution works at the DNA level. This has been known for a long time. Darwin did not know it, but he was prescient enough to ...
Molecular evolution of a microRNA cluster
The molecular evolution of feathers with direct evidence from fossils | PNAS
The molecular evolution of feathers with direct evidence from fossils. Yanhong Pan, Wenxia Zheng, Roger H. Sawyer, Michael W. ... The molecular evolution of feathers with direct evidence from fossils. Yanhong Pan, Wenxia Zheng, Roger H. Sawyer, Michael W. ... The molecular evolution of feathers with direct evidence from fossils. Yanhong Pan, Wenxia Zheng, Roger H. Sawyer, Michael W. ... The molecular evolution of feathers with direct evidence from fossils Message Subject (Your Name) has sent you a message from ...
Evidence for an ancient adaptive episode of convergent molecular evolution | PNAS
Evidence for an ancient adaptive episode of convergent molecular evolution. Todd A. Castoe, A. P. Jason de Koning, Hyun-Min Kim ... Evidence for an ancient adaptive episode of convergent molecular evolution. Todd A. Castoe, A. P. Jason de Koning, Hyun-Min Kim ... Evidence for an ancient adaptive episode of convergent molecular evolution. Todd A. Castoe, A. P. Jason de Koning, Hyun-Min Kim ... Evidence for an ancient adaptive episode of convergent molecular evolution Message Subject (Your Name) has sent you a message ...
Bioinformatics and Molecular Evolution | Bioinformatics & Computational Biology | Life Sciences | Subjects | Wiley
Many bioinformatics applications are based on principles of molecular evolution, and to study molecular evolution is ... giving detailed treatments of molecular evolution and molecular phylogenetics and discussing evolution at the whole-genome ... places bioinformatics in the context of evolutionary biology, including population genetics, molecular evolution, molecular ... Bioinformatics and Molecular Evolution. Paul G. Higgs, Teresa K. Attwood. ISBN: 978-1-118-69707-8 June 2013 Wiley-Blackwell 448 ...
Molecular Systematics and Plant Evolution: 1st Edition (Paperback) - Routledge
It looks at population genetics, phylogeny (history of evolution) and developmental genetics, to provide a framework from which ... Molecular Systematics and Plant Evolution discusses the diversity and evolution of plants with a molecular approach. ... Molecular Systematics and Plant Evolution discusses the diversity and evolution of plants with a molecular approach. It looks ... Molecular Systematics and Plant Evolution. 1st Edition. Edited by Peter M. Hollingsworth, Richard M. Bateman, Richard J. ...
Molecular evolution
... is the process of evolution at the scale of DNA, RNA, and proteins. Molecular evolution ... Journals dedicated to molecular evolution include Molecular Biology and Evolution, Journal of Molecular Evolution, and ... Molecular evolution is the process of evolution at the scale of DNA, RNA, and proteins. Molecular evolution emerged as a ... The Society for Molecular Biology and Evolution publishes the journal "Molecular Biology and Evolution" and holds an annual ...
Molecular Mechanisms of Colicin Evolution | Riley Lab
Molecular characterization of the klebicin B plasmid of Klebsiella pneumoniae.. *Molecular evolution of bacteriocins in gram- ... Home » About the Lab » Research » Publications » Molecular Mechanisms of Colicin Evolution. Molecular Mechanisms of Colicin ... Molecular mechanisms of bacteriocin evolution.. *Nucleotide Polymorphism at the Xanthine Dehydrogenase Locus in Drosophila ... Tests of parallel molecular evolution in a long-term experiment with Escherichia coli. ...
PhylogenySystematicsPhylogeneticsGenesPhylogeniesPopulation GeneticsSpeciesBioinformaticsGenomesBiology and EvolutionGenome EvolutionJournal of MolecuConvergent evolutionGenomicsTopics in Molecular EvolutionProteinsBiochemistryOrganismsEcologyRate of molecular evolutionField of molecular evolutionSubstitutionSequence dataGeneAmino acidSequencesBiologistsDiversityPhylogenetic analysesMutationCellularDrosophila2002Protein evolutionSitu hybridizationSelection in molecular evolutionMechanisms of evolutionary changeOriginEvidenceLevelGenetic variationDivergenceAdaptive EvolutionAnalysesProcesses1997MitochondriaGenetics and EvolutionNucleicResearchLaboratoryRecombinationSystematic
Phylogeny11
- The journal provides a forum for molecular studies that advance our understanding of phylogeny and evolution , further the development. (elsevier.com)
- The journal provides a forum for molecular studies that advance our understanding of phylogeny and evolution , further the development of phylogenetically more accurate taxonomic classifications , and ultimately bring a unified classification for all the ramifying lines of life. (elsevier.com)
- Synapsin protein sequences from all these species were then used to explore the molecular phylogeny of these important neuronal phosphoproteins. (nih.gov)
- It looks at population genetics, phylogeny (history of evolution) and developmental genetics, to provide a framework from which to understand evolutionary patterns and relationships amongst plants. (routledge.com)
- Molecular systematics is the process of using data on the DNA, RNA, or proteins to resolve questions in phylogeny and taxonomy . (wikipedia.org)
- We have generated and collected multilocus sequence data (mtSSU, nrITS, nrLSU, RPB1 , RPB2 ) for 149 species associated with the Ramalinaceae and present the first comprehensive molecular phylogeny of the family. (ingentaconnect.com)
- We used ancestral state reconstructions on our molecular family phylogeny to trace the evolution of character states. (ingentaconnect.com)
- Persoonia aims to publish papers dealing with molecular phylogeny and evolution of fungi. (ingentaconnect.com)
- This computer simulation demonstrates the phylogeny reconstruction using virus evolution. (nescent.org)
- She works in the project "Phylogeny, historic biogeography and niche evolution of the neotropical Marcgraviaceae - a model case of swift morphological diversification and speciation by flower-pollinator-interaction" (project leader: Dr. Stefan Dressler) with funding from DFG (Deutsche Forschungsgemeinschaft). (senckenberg.de)
- Molecular phylogeny of Chaetodon (Teleostei: Chaetodontidae) in the Indo-West Pacific: evolution in geminate species pairs and species groups" (PDF). (wikipedia.org)
Systematics10
- Dr. OBrochtaUs laboratory is adjacent to a large molecular systematics laboratory ion of DNA from know species of heliothines is available for this project. (bio.net)
- Case Studies of Viral Taxa: Their Systematics and Evolution: 18. (cambridge.org)
- Molecular Systematics and Plant Evolution discusses the diversity and evolution of plants with a molecular approach. (routledge.com)
- Molecular systematics is a product of the traditional field of systematics and molecular genetics . (bionity.com)
- It is the process of using data on the molecular constitution of biological organisms' DNA , RNA , or both, in order to resolve questions in systematics, i.e. about their correct scientific classification or taxonomy from the point of view of evolutionary biology . (bionity.com)
- Molecular systematics has been made possible by the availability of techniques for DNA sequencing , which allow the determination of the exact sequence of nucleotides or bases in either DNA or RNA. (bionity.com)
- Molecular systematics has been made possible by techniques for sequence analysis . (wikipedia.org)
- Molecular systematics and character evolution in the lichen famil. (ingentaconnect.com)
- This advanced textbook is aimed at graduate level students and professional researchers (both empiricists and theoreticians) in the fields of bioinformatics and computational biology, statistical genomics, evolutionary biology, molecular systematics, and population genetics. (bokkilden.no)
- Global diversity and molecular systematics of Wrightoporia s.l. (ingentaconnect.com)
Phylogenetics8
- Molecular Phylogenetics and Evolution is dedicated to bringing Darwin's dream within grasp - to 'have fairly true genealogical trees of each great kingdom of Nature. (elsevier.com)
- His current research interests include RNA structure and sequence evolution, molecular phylogenetics, theoretical evolutionary biology, and population genetics. (wiley.com)
- Further Topics in Molecular Evolution and Phylogenetics. (wiley.com)
- Molecular Phylogenetics and Evolution, 44 (1): 15-25. (exeter.ac.uk)
- Molecular Phylogenetics and Evolution , 63: 521-526. (exeter.ac.uk)
- Molecular Evolution: a statistical approach presents and explains modern statistical methods and computational algorithms for the comparative analysis of genetic sequence data in the fields of molecular evolution, molecular phylogenetics, statistical phylogeography, and comparative genomics. (bokkilden.no)
- Molecular Phylogenetics and Evolution is a peer-reviewed scientific journal of evolutionary biology and phylogenetics. (wikipedia.org)
- It will be of relevance and use to students and professional researchers (both empiricists and theoreticians) in the fields of molecular phylogenetics, evolutionary biology, population genetics, mathematics, statistics and computer science. (oup.com)
Genes26
- An international roster of scientists will discuss topics such as Darwinism in an age of molecular revolution, how the molecular revolution began, biomedical research and genes, sequences and other molecular clues to the history of life. (latimes.com)
- One hypothesis suggests that most molecular evolution is driven by random changes in genes, or "neutral drift. (pbs.org)
- It describes the dynamics of evolutionary change at the molecular level, the driving forces behind the evolutionary process, novel evolutionary phenomena revealed by molecular data, the effects of various molecular mechanisms on the structure of genes and genomes, and the methodology involved in the statistical analysis of molecular data from an evolutionary perspective. (worldcat.org)
- This text describes the dynamics of evolutionary change at the molecular level, the driving forces behind the evolutionary process, and the effects of the various molecular mechanisms on the structure of genes and genomes. (worldcat.org)
- Bringing together molecular cell biologists, immunologists and evolutionary biologists who appeared ready to candidly discuss their favorite cellular processes and structures and debate the origins of cellular compartments and cellular immunity in the context of new ideas about genes and their capacity for evolution was a risky experiment for us as organizers of this conference," said Mayor. (asbmb.org)
- Recently, new genes and their proteins that revealed striking new insights into the early evolution of multicellular animals have been identified and characterized from members of the lowest metazoan phylum, the porifera (sponges). (springer.com)
- Molecular phylogenetic estimates among 34 squamate reptile species plus 6 tetrapod outgroup species were examined based on 2 nucleotide datasets: a nuclear dataset with 2 nuclear genes (3,411 bp) and a mitochondrial dataset including all 13 protein-coding mitochondrial genes (11,727 bp). (pnas.org)
- Major topics in molecular evolution concern the rates and impacts of single nucleotide changes, neutral evolution vs. natural selection, origins of new genes, the genetic nature of complex traits, the genetic basis of speciation, evolution of development, and ways that evolutionary forces influence genomic and phenotypic changes. (wikipedia.org)
- Evidence suggests that stable long-term acquisitive evolution results from minor increases in mutation rates of genes related to a particular stress, with minimal disturbance to the balanced and resilient metabolism critical for responding to an unpredictable environment. (wiley.com)
- Scientists believe that the study of genes that encode the proteins for molecular motors will help solve the mysteries of evolution. (icr.org)
- Specifically, the ideas of convergent evolution and lineage-specific expansions are nothing more than fancy terms for the fact that these different types of myosin genes appeared suddenly in unrelated creatures at the same time. (icr.org)
- By comparing the relative rate of molecular evolution between humans and chimps with that of their lice, a new study published in the Proceedings of the Royal Society B is attempting to discover whether evolution marches on a same rate of speed in all creatures or whether subtle changes in genes occur rapidly in some species than in others. (medindia.net)
- Previous studies had looked at the rate of molecular changes between parasites and their hosts, but most focused on single genes in the mitochondria, tiny energy-generating structures outside the nucleus of the cell that are easier to study. (medindia.net)
- He is especially interested in problems related to understanding the evolution of genes, genomes, and species. (uconn.edu)
- We concluded that heterogeneous alterations in the p53 gene and occasionally in the N-RAS genes accompany the evolution of chronic phase CML to blast crisis. (jci.org)
- We have investigated the molecular evolution of one such group of seven Avh genes. (usda.gov)
- We have also been able to obtain the sequence of homologous Avh genes in the sister taxa P. hibernalis , P. lateralis , and P. foliorum allowing for examination of the evolution of these genes across species. (usda.gov)
- This study focuses on the evolution of mammalian TET genes. (mdpi.com)
- Genetic change, and hence the evolution of new species, is commonly thought to result from small, random mutations in individual genes, but a growing wealth of data emphasizes that that perception is wrong. (ucla.edu)
- Like many others--Nobel laureate Barbara McClintock was a notable exception--Thomas thought that genetic change, and hence the evolution of new species, results from small, random mutations in individual genes. (ucla.edu)
- This study traces the evolution of LOX genes which have been differentially retained and expanded in rosid plants. (frontiersin.org)
- Polyploidy has been and continues to have an extensive effect on the number or type of genes in plant evolution ( Adams and Wendel, 2005 ). (frontiersin.org)
- Given this limitation, there are very few opportunities to examine the co-evolution of genes in the genome of living organisms and morphological features preserved in the fossil record. (innovations-report.com)
- We predicted that enamel-specific genes such as enamelin would show evidence in living organisms of molecular decay because these genes are vestigial and no longer necessary for survival. (innovations-report.com)
- The molecular counterpart to vestigial organs is pseudogenes that are descended from formerly functional genes," Springer explained. (innovations-report.com)
- Yang describes the models, methods and algorithms that are most useful for analysing the ever-increasing supply of molecular sequence data, with a view to furthering our understanding of the evolution of genes and genomes. (oup.com)
Phylogenies5
- Integrating Molecular Phylogenies and Developmental Genetics: a Gesneriaceae Case Study M. Möller, M. Clokie, P. Cubas and Q.C.B. Cronk 18. (routledge.com)
- Hamilton, P.B., Gibson, W.C. and Stevens, J.R. (2007) Patterns of co-evolution between trypanosomes and their hosts deduced from ribosomal RNA and protein-coding gene phylogenies. (exeter.ac.uk)
- The advent of protein sequencing allowed molecular biologists to create phylogenies based on sequence comparison, and to use the differences between homologous sequences as a molecular clock to estimate the time since the last universal common ancestor. (wikipedia.org)
- The temporal signal of the ML trees and compatibility with molecular clock phylogenies were assessed with TempEst v1.5.3 ( 7 ). (cdc.gov)
- It will be a major source for insight and enormously helpful for anyone who wants to understand molecular phylogenies. (oup.com)
Population Genetics3
- Molecular evolution emerged as a scientific field in the 1960s as researchers from molecular biology , evolutionary biology and population genetics sought to understand recent discoveries on the structure and function of nucleic acids and protein. (bionity.com)
- The field of molecular evolution uses principles of evolutionary biology and population genetics to explain patterns in these changes. (wikipedia.org)
- The neutral theory is based on simple assumptions, enabling us to develop mathematical theories based on population genetics to treat molecular evolution and variation in quantitative terms. (go.jp)
Species16
- In the evolution of modern species, there have been millions of molecular changes. (blackwellpublishing.com)
- In the field of molecular evolution, inferences about past evolutionary events are made using molecular data from currently living species. (springer.com)
- With the availability of genomic data from multiple related species, molecular evolution has become one of the most active and fastest growing fields of study in genomics and bioinformatics. (springer.com)
- The concept that each protein from each species of animal was a single chemical substance at the molecular level was implicit for the hemoglobins in the report by Reichert and Brown. (genetics.org)
- In the meantime, Kimura had published a short note in Nature ( K imura 1968 ) in which he pointed out that the rate of random fixation of neutral mutation in evolution, per species per generation, is equal to the rate of occurrence of neutral mutation per species per generation and is independent of population size. (genetics.org)
- The Red Queen hypothesis proposes that coevolution of interacting species (such as hosts and parasites) should drive molecular evolution through continual natural selection for adaptation and counter-adaptation. (nih.gov)
- These results demonstrate, at both the genomic and phenotypic level, that antagonistic coevolution is a cause of rapid and divergent evolution, and is likely to be a major driver of evolutionary change within species. (nih.gov)
- Explain creation and sustenance of life to keep in tune with the changing environment, a factor critical in the evolution of species over time. (medindia.net)
- Thus the protein models in the study inspired by the protein misfolding disease show how altered protein structure can bring about newer and useful functions as well which is critical for the phylogenetic evolution of species. (medindia.net)
- Reticulate Evolution in the Mediterranean Species Complex of Senecio Sect. (routledge.com)
- Some of the key topics that spurred development of the field have been the evolution of enzyme function, the use of nucleic acid divergence as a " molecular clock " to study species divergence, and the origin of non-functional or junk DNA . (bionity.com)
- On the Origins of Species: Does Evolution Repeat Itself in Polyploid Populations of Independent Origin? (cshlpress.com)
- This page includes an archive of materials from the 150th anniversary of the publication of "The Origin of Species" as well as recent columns by Olivia Judson and Sean Carroll on evolution. (nescent.org)
- The so-called 'molecular clock' hypothesis, which states that the rate of molecular evolution is constant in time and across lineages, is only rarely met: some species evolve significantly faster than others as far as molecules are concerned ( Bromham & Penny 2003 ). (royalsocietypublishing.org)
- They predicted that these species would have copies of the gene that codes for the tooth-specific enamelin protein, but this gene would show evidence of molecular decay in these species. (innovations-report.com)
- The theory also asserts that most of the genetic variability within species at the molecular level (such as protein and DNA polymorphism) are selectively neutral or very nearly neutral and that they are maintained in the species by the balance between mutational input and random extinction. (go.jp)
Bioinformatics9
- The journal encourages articles that are multidisciplinary, especially in areas, such as bioinformatics, computational biology, molecular biology, and organismic biology, that are of interest to the community of systematic and evolutionary biologists. (elsevier.com)
- In the current era of complete genome sequencing, Bioinformatics and Molecular Evolution provides an up-to-date and comprehensive introduction to bioinformatics in the context of evolutionary biology. (wiley.com)
- This important textbook will equip readers with a thorough understanding of the quantitative methods used in the analysis of molecular evolution, and will be essential reading for advanced undergraduates, graduates, and researchers in molecular biology, genetics, genomics, computational biology, and bioinformatics courses. (wiley.com)
- Much of bioinformatics is based on, yet too often ignores, the underlying principles of molecular evolution. (wiley.com)
- This book nicely integrates molecular evolution and bioinformatics, two disciplines that go hand in hand, as rightfully claimed by the authors. (wiley.com)
- Many bioinformatics applications are based on principles of molecular evolution, and to study molecular evolution is unthinkable nowadays without having access to the necessary tools and implementations. (wiley.com)
- Microscopy, image processing, bioinformatics, in situ hybridization, molecular (epi)genetics and systems biology lets us explore and exploit fundamental processes. (le.ac.uk)
- Thanks in advance, Tonu Margus ======================================== Tonu Margus Department of Bioinformatics Institute of Cell and Molecular Biology University of Tartu Riia str. (bio.net)
- A molecular evolutionary framework is central to many Bioinformatics approaches used in these analyses, e.g., de novo gene finding from genomic sequences. (embo.org)
Genomes7
- Here, we present a case of extensive convergent molecular evolution between snake and agamid lizard mitochondrial genomes that overcomes an otherwise strong phylogenetic signal. (pnas.org)
- Therefore, by comparing genomes valuable information can be obtained to help explain how millions of years of evolution have generated remarkably complex organisms. (idw-online.de)
- Patterns of alternating GC and AT rich motifs correlated well with hypervariable region recombination sites across the HAdV-D genomes, suggesting foci of DNA instability lead to formulaic patterns of homologous recombination and confer agility to adenovirus evolution. (harvard.edu)
- The new analysis is the first to look at the pace of molecular change across the genomes of different groups. (medindia.net)
- Biologists at the University of California, Riverside report new evidence for evolutionary change recorded in both the fossil record and the genomes (or genetic blueprints) of living organisms, providing fresh support for Charles Darwin's theory of evolution. (innovations-report.com)
- Now his lab has found evidence of such molecular "cavities" in the genomes of living organisms. (innovations-report.com)
- Genomes are the ultimate molecular documents, filled with stories that fascinate and instruct, and we can now speed-read them. (infectioncontroltoday.com)
Biology and Evolution4
- However, the result of a study published in the journal Genome Biology and Evolution has only served to support the predictions of special creation-that unique variants of cellular complexity and innovation exist at all levels of life. (icr.org)
- Genome Biology and Evolution. (icr.org)
- Molecular Biology and Evolution 16: 1315-1328. (els.net)
- Human Longevity: Omega-3 Fatty Acids, Bioenergetics, Molecular Biology, and Evolution is built on the proposition that we age as our mitochondria age. (routledge.com)
Genome Evolution2
- Genome Evolution. (wiley.com)
- The topics covered include the appearance of the first genetic material, the origins of cellular life, evolution and development, selection and adaptation, and genome evolution. (cshlpress.com)
Journal of Molecu2
- His is an associate editor of the Journal of Molecular Evolution and has published more than fifty original papers in peer-reviewed journals on the topic of this book. (springer.com)
- Journal of Molecular Evolution, 40: 190-226. (els.net)
Convergent evolution5
- When we see convergent evolution provide the same solution to a complex problem, we have a better understanding of its importance. (asbmb.org)
- Combined with strong previous evidence for adaptive evolution in snake mitochondrial proteins, it is likely that much of this convergent evolution was driven by adaptation. (pnas.org)
- Although nonneutral convergent evolution of morphological characters has been frequently pointed to as a source of potential bias in phylogenetic inference ( 4 - 6 ), nonneutral convergence at the molecular-genetic level is believed to be relatively rare and limited in scope. (pnas.org)
- We examined whether the results could be explained by neutral convergence or were instead due to potentially adaptive nonneutral convergent evolution. (pnas.org)
- This is, therefore, a classic case of convergent evolution: Both groups evolved similar molecular mechanisms for a eusocial lifestyle under similar selection pressures," says genomics expert Dr Mark Harrison, first author of the study. (idw-online.de)
Genomics2
- We do research in molecular genetics, functional genomics, cell biology, developmental biology, biotechnology and biochemistry in established model organisms. (bio.net)
- Integrated genomics and comprehensive validation reveal drivers of genomic evolution in esophageal adenocarcinoma. (harvard.edu)
Topics in Molecular Evolution1
- Research topics in molecular evolution include the characterization of novel hantaviruses harbored by shrews, moles and bats in different geographic locations and investigation of Burkholderia pseudomallei in humans, animal models, and in the environment. (hawaii.edu)
Proteins8
- Evolution, at the molecular level, is observableas nucleotide changes in the DNA and amino acid changes in proteins. (blackwellpublishing.com)
- We can observe molecular evolution in DNA , and also in amino acid changes in proteins . (pbs.org)
- Individual proteins placed under similar selective pressures have been observed, however, to respond with convergent molecular changes ( 7 - 12 ). (pnas.org)
- Molecular evolution is the process of evolution at the scale of DNA , RNA , and proteins . (bionity.com)
- Molecular evolution is the process of change in the sequence composition of cellular molecules such as DNA, RNA, and proteins across generations. (wikipedia.org)
- The history of molecular evolution starts in the early 20th century with comparative biochemistry, and the use of "fingerprinting" methods such as immune assays, gel electrophoresis and paper chromatography in the 1950s to explore homologous proteins. (wikipedia.org)
- After the 1970s, nucleic acid sequencing allowed molecular evolution to reach beyond proteins to highly conserved ribosomal RNA sequences, the foundation of a reconceptualization of the early history of life. (wikipedia.org)
- The rate at which DNA and proteins accumulate substitutions is an important aspect of molecular evolution. (royalsocietypublishing.org)
Biochemistry2
- Comparative biochemistry demonstrates that the metabolites, complex biochemical networks, enzymes and regulatory mechanisms essential to all living cells are conserved in amazing detail throughout evolution. (wiley.com)
- PhD students and scientists with interests on physiology, ecotoxicology, biochemistry, molecular biology, molecular evolution and aquatic science disciplines will find this book very useful, based on the concepts and the relative biomarkers study cases, analyzed from the evolutionary point of view. (novapublishers.com)
Organisms4
- While evolution involves changes in organisms that we can observe, they undergo evolution at a deeper level, too. (pbs.org)
- Evolutionary scientists often use results derived from molecular biology dating methods (based on DNA sequence similarities) to bolster their assumptions that some related organisms may have diverged millions of years ago. (icr.org)
- By using these recent methodologies, it could be useful to shed light on the molecular evolution of the biomarkers, and which role and functionality can be better understood based on exploring the relative evolution pathways in several aquatic organisms. (novapublishers.com)
- The new study begins to answer fundamental questions about changes at the molecular level that eventually shape the destinies of all organisms, Johnson said. (medindia.net)
Ecology4
- 1. Using Organelle Markers to Elucidate the History, Ecology and Evolution of Plant Populations R.A. Ennos, W.T. Sinclair, X.-S. Hu and A. Langdon 2. (routledge.com)
- to assess how the study of genetics and the use of molecular tools can inform biodiversity conservation, animal breeding, animal welfare and our understanding of evolutionary ecology. (unitec.ac.nz)
- Another 2017 publication considers the role of polyploidy or whole genome duplication in ecology and evolution . (le.ac.uk)
- A rich ecology of practices and theoretical debates, embedded in some of the political concerns and policies of the postwar period, is part of the emergence of the field of Molecular Evolution. (springer.com)
Rate of molecular evolution1
- Here we show, using experimental populations of the bacterium Pseudomonas fluorescens SBW25 and its viral parasite, phage Phi2 (refs 10, 11), that the rate of molecular evolution in the phage was far higher when both bacterium and phage coevolved with each other than when phage evolved against a constant host genotype. (nih.gov)
Field of molecular evolution2
- The field of molecular evolution came into its own in the 1960s and 1970s, following the rise of molecular biology. (wikipedia.org)
- The field of molecular evolution has experienced explosive growth in recent years due to the rapid accumulation of genetic sequence data, continuous improvements to computer hardware and software, and the development of sophisticated analytical methods. (oup.com)
Substitution2
- Evolution consists of the substitution of one variant for another when the environment changes. (blackwellpublishing.com)
- Gillespie JH (1994) Substitution process in molecular evolution. (els.net)
Sequence data3
- A deeper understanding of the mechanisms and processes of molecular evolution should lead to more accurate models of molecular evolution, which in turn should facilitate the development of better algorithms for reconstructing evolutionary history from sequence data. (elsevier.com)
- Studies of evolution at the molecular level have experienced phenomenal growth in the last few decades, due to rapid accumulation of genetic sequence data, improved computer hardware and software, and the development of sophisticated analytical methods. (bokkilden.no)
- To this end, we aim to provide graduate and postgraduate researchers with the theoretical knowledge and practical skills to carry out molecular evolutionary analyses on sequence data. (embo.org)
Gene16
- Molecular evolution of the synapsin gene family. (nih.gov)
- In invertebrate synapsins, the most conserved domains are C and E. During the evolution of vertebrates, at least two gene duplication events are hypothesized to have given rise to the synapsin gene family. (nih.gov)
- However, the nucleotide sequence of rpoB from one isolate examined suggests that interspecies gene transfer may also have played a role in the evolution of rifampicin-resistance in S. pneumoniae. (nih.gov)
- In the 2000s, some of the active topics have been the role of gene duplication in the emergence of novel gene function, the extent of adaptive molecular evolution versus neutral drift, and the identification of molecular changes responsible for various human characteristics especially those pertaining to infection , disease, and cognition. (bionity.com)
- Mutations are considered the driving force of evolution , where less favorable (or deleterious ) mutations are removed from the gene pool by natural selection , while more favorable (or beneficial ) ones tend to accumulate. (bionity.com)
- The near‐neutrality concept may be extended to the evolution of such systems, where epigenetics and robustness are important for gene expression and many mutations are weakly selected. (els.net)
- Khaitovich P, Enard W, Lachmann M and Pääbo S (2006) Evolution of primate gene expression. (els.net)
- We were able to deduce that, long before the evolution of termites, one particular class of transposons led to the expansion of gene families probably involved in communication," added Dr Evelien Jongepier, also first author. (idw-online.de)
- They found that - at the scale of random changes to gene sequence - the lice are winning the molecular evolutionary race. (medindia.net)
- Molecular phylogenetic analyses using two data sets, derived from DNA sequences of matK, the maturase-encoding gene located in an intron of the chloroplast gene trnK, and ITS (internal transcribed spacer) region of the 18S-26S nuclear ribosomal DNA, were performed to examine relationships among 37 taxa in Cymbidium. (nii.ac.jp)
- The most common genetic change found in the evolution of typical Ph1 chromosome positive CML to blast crisis was an alteration of the p53 gene involving either a rearrangement, a deletion, or a point mutation in the coding sequence of the gene. (jci.org)
- Human Gene Evolution. (researchandmarkets.com)
- Presents the principles of human gene evolution in a concise and easy to understand fashion. (researchandmarkets.com)
- Here we show that some members of the LOX gene family in the Arabidopsis genome are likely to be lost during evolution, leading to a smaller size than that in Populus, Vitis , and Carica . (frontiersin.org)
- The researchers were able to correlate the progressive loss of enamel in the fossil record with a simultaneous molecular decay of a gene, called the enamelin gene, that is involved in enamel formation in mammals. (innovations-report.com)
- In our research we clearly see the parallel evolution of enamel loss in the fossil record and the molecular decay of the enamelin gene into a pseudogene in representatives of four different orders of mammals that have lost enamel. (innovations-report.com)
Amino acid2
- Papers based on few taxa, single molecular markers, or that use codon-based methods to test for positive Darwinian selection, but in the absence of experimental evidence that allegedly selected amino acid changes cause an adaptive phenotypic effect, will not be accepted. (elsevier.com)
- Documented cases of convergent molecular evolution due to selection are fairly unusual, and examples to date have involved only a few amino acid positions. (pnas.org)
Sequences7
- In addition, presentations of new findings on or insights into evolutionary processes and mechanisms as expressed at the molecular level are welcome, as are those that deal with the methodology of reconstructing evolutionary history from molecular data (such as descriptions of new or more powerful computer algorithms for constructing phylogenetic trees from orthologous nucleotide or aminoacid sequences). (elsevier.com)
- What we observe as evolution consists of shuffling round within this limited set of equivalent sequences. (blackwellpublishing.com)
- Using the mutation rate per generation and the number of nucleotide differences between two sequences, divergence times can be estimated effectively via the molecular clock. (wikipedia.org)
- Nuclear sequences analyzed under maximum parsimony and minimum evolution criteria did not resolve relationships among families and suborders. (ingentaconnect.com)
- We often hear about new 'genome sequences,' commercial kits that can tell you about your ancestry (including pre-human) from your DNA or disease predispositions, debates about the truth of evolution, why animals behave the way they do, and how people found 'genetic evidence for natural selection. (coursera.org)
- Today, similarities and differences in molecular data (protein and DNA sequences) are also being used. (vernier.com)
- Next, the researchers analyzed sequences using a variety of molecular evolutionary methods, including new approaches developed by Springer's group. (innovations-report.com)
Biologists5
- This book is suitable for statisticians seeking to learn more about applications in molecular evolution and molecular evolutionary biologists with an interest in learning more about the theory behind the statistical methods applied in the field. (springer.com)
- Brodsky added, "Molecular cell biologists interested in the evolutionary origins of pathways we study can learn a lot from immunologists who have refined techniques to extract information from the co-evolution of host-pathogen interaction pathways, which are the most rapidly evolving in biology. (asbmb.org)
- In the late 1960s, the neutral theory of molecular evolution provided a theoretical basis for the molecular clock, though both the clock and the neutral theory were controversial, since most evolutionary biologists held strongly to panselectionism, with natural selection as the only important cause of evolutionary change. (wikipedia.org)
- Molecular Biologists recognize that the model is a rough approximation to reality and there is considerable literature on the effects of model deviations. (gerad.ca)
- Abir-Am P (1992) The politics of macromolecules: molecular biologists, biochemists, and rhetoric. (springer.com)
Diversity2
- Simpson, A.G.B., Stevens, J.R. and Lukes, J. (2006) The evolution and diversity of kinetoplastid flagellates. (exeter.ac.uk)
- Diversity and evolution of dominant African savanna grasses. (senckenberg.de)
Phylogenetic analyses1
- Additionally, explicit use of molecular evolutionary and phylogenetic analyses provide important insights in their own right, e.g., analysis of adaptive evolution in viruses providing clues of their interaction with host immune systems. (embo.org)
Mutation4
- In addition, it is theorized that certain chemical reactions may have taken place on early Earth, before true evolution began, and some of these reactions may have helped to form these informational molecules that enabled replication and mutation. (encyclopedia.com)
- Roles of mutation and selection in molecular evolution. (worldcat.org)
- This session will highlight research into the molecular mechanisms involved in evolutionary processes such as mutation, inheritance, phenotypic plasticity, and more. (grc.org)
- They are also learning that the enzymes that copy and maintain the DNA introduce changes in some parts of the genome and not others, creating hotspots of mutation that increase the efficiency of evolution. (ucla.edu)
Cellular8
- This book is one of the first solely devoted to the origins and evolution of viruses, and of the ways in which they interact with their cellular hosts and vectors. (cambridge.org)
- The conference taught me an important lesson: Evolution of a biochemical process can teach us a great deal about how it operates - it can help determine which features are fundamental and which represent cellular or organismal specialization. (asbmb.org)
- I have often neglected to consider evolution when trying to understand the molecular basis of a given cellular process. (asbmb.org)
- The main problem with this idea is that, not only does no such creature exist, but eukaryotes also contain molecular similarities to both bacteria and archaea-prokaryotes that are found in completely separate domains of cellular life. (icr.org)
- Another major problem is that many complex molecular and cellular features unique among eukaryotes are not found in any prokaryotes. (icr.org)
- Clearly, the only scientific model that predicts this type of molecular and cellular complexity and innovation across all forms of life is one associated with special creation. (icr.org)
- Viewing molecular and cellular processes within their evolutionary contexts can reveal key mechanistic information. (grc.org)
- Viruses and mobile genetic elements are molecular parasites or symbionts that coevolve with nearly all forms of cellular life. (asm.org)
Drosophila1
- McDonald JH and Kreitman M (1991) Adaptive protein evolution at the Adh locus in Drosophila. (els.net)
20021
- Aronson JD (2002) 'Molecules and monkeys': George Gaylord Simpson and the challenge of molecular evolution. (springer.com)
Protein evolution5
- A widely accepted principle is that protein evolution is mainly determined by constraints on activity, specificity, folding, and stability ( 1-4 ). (sciencemag.org)
- Thus, we previously proposed that metabolic flows and geochemical budgets might be constraints that were imprinted on protein evolution ( 5 ). (sciencemag.org)
- Genome‐wide data on protein evolution are mostly in accord with the nearly neutral theory. (els.net)
- Many observed patterns of protein evolution by measuring synonymous and nonsynonymous divergences are in accord with the nearly neutral theory. (els.net)
- By creating a deeper understanding for the evolutionary dynamics of an important drug targetenzyme, our proposal will develop experimental and computational tools for studying protein evolution with theultimate goal of improving human health. (usda.gov)
Situ hybridization1
- Our key methods for in situ hybridization are given at this website with more information about methods for molecular cytogenetics and in situ hybridization as well as some other methods used in our laboratory. (le.ac.uk)
Selection in molecular evolution1
- Fu, Yun‐Xin(Apr 2001) Neutrality and Selection in Molecular Evolution: Statistical Tests. (els.net)
Mechanisms of evolutionary change1
- The wealth of information contained in colicin sequence comparisons makes this an ideal system with which to explore molecular mechanisms of evolutionary change. (umass.edu)
Origin5
- Molecular evolution " is a term used to describe the stages that preceded the origin of life on Earth. (encyclopedia.com)
- Sponsored by the Center for the Study of Evolution and the Origin of Life, the symposium will be held in Schoenberg Hall from 9 a.m. to 5 p.m. (latimes.com)
- This review explores features of the origin and evolution of colicins in Escherichia coli. (umass.edu)
- This site has lesson plans and general information about evolution, the nature of science, origin of life and genetics. (nescent.org)
- I also discuss such topics as the evolution of deviant coding systems in Mycoplasma , the origin of life and the unified understanding of molecular and phenotypic evolution. (go.jp)
Evidence2
- Fay JC (2011) Weighing the evidence for adaptation at the molecular level. (els.net)
- Previous studies in evolutionary biology have provided only limited evidence linking morphological degeneration in the fossil record to molecular decay in the genome. (innovations-report.com)
Level10
- Therefore, random processes explain most of evolution at the molecular level. (pbs.org)
- Further chapters detail genetic variation of viruses and the molecular basis of interrelation at the population level and the molecular basis and evolution of this relationship. (cambridge.org)
- Irreducibly complex parts at the molecular level are actually cobbled together by simpler parts and put together as a whole. (hubpages.com)
- Evolution works at the DNA level. (hubpages.com)
- Regardless of the frequency of nonneutral convergence in nature, it is important to identify such cases to understand their impact on phylogenetic inference and to illuminate the mechanisms of functional adaptation at the molecular level. (pnas.org)
- Nearly neutral theory is an extension of the neutral theory and contends that the borderline mutations, whose effects lie between the selected and the neutral classes, are important at the molecular level. (els.net)
- Introduction to Genetics and Evolution is a college-level class being offered simultaneously to new students at Duke University. (coursera.org)
- In sharp contrast to the Darwinian theory of evolution by natural selection, the neutral theory claims that the overwhelming majority of evolutionary changes at the molecular level are caused by random fixation (due to random sampling drift in finite populations) of selectively neutral (i.e., selectively equivalent) mutants under continued inputs of mutations. (go.jp)
- Although many important discoveries have been made, the question of how memories are encoded and maintained at the molecular level remains. (nature.com)
- This information will prove invaluable as we proceed to dissect, at a molecular level, events associated with Q fever pathogenesis. (infectioncontroltoday.com)
Genetic variation2
- This session will highlight research that harnesses the power of experimental evolution, phylogenetic reconstructions, and standing genetic variation to gain insight into molecular systems. (grc.org)
- Genetic variation analyses indicate conserved SARS-CoV-2-host interaction and varied genetic adaptation in immune response factors in modern human evolution. (harvard.edu)
Divergence1
- This fact, a mutual divergence that began at the same point in time (roughly 5 million to 6 million years ago) allowed Johnson and his colleagues to determine whether molecular evolution occurs faster in primates or in their parasites. (medindia.net)
Adaptive Evolution2
- In retrospect, it might have been better to entitle the article "Non-adaptive evolution," because "non-Darwinian" probably raised the hackles of admirers of Charles Darwin. (genetics.org)
- up constraint with adaptive evolution and just call it neutral. (coursera.org)
Analyses1
- Typical molecular systematic analyses require the sequencing of around 1000 base pairs . (bionity.com)
Processes5
- Convergent molecular evolution, sometimes referred to as homoplasy, can result from neutral processes or from nonneutral processes such as positive selection and adaptation ( 1 - 3 ). (pnas.org)
- To assess the hypothesis that nutritional constraints might have influenced the evolution of protein structure, we computed the atomic composition of enzymes involved in elemental assimilation processes in the two model microorganisms E. coli and S. cerevisiae . (sciencemag.org)
- We research crop plants and farm animals, studying their evolution and organization at the DNA to genome levels: large-scale processes with chromosomes, polyploidy and DNA sequence. (le.ac.uk)
- We undertake research into the evolutionary processes that shape patterns of modern and ancient human molecular and cultural variation. (ucl.ac.uk)
- This GRS seeks to overcome traditional disciplinary divides by bringing together junior scientists from a wide array of fields who share common goals: uncovering molecular mechanisms that drive evolution and/or using evolution and natural variation to better understand molecular processes. (grc.org)
19972
Mitochondria2
- At a very early stage in evolution, mitochondria were derived from bacteria that lived within the first eukaryotic cells. (hubpages.com)
- These results indicate that nonneutral convergent molecular evolution in mitochondria can occur at a scale and intensity far beyond what has been documented previously, and they highlight the vulnerability of standard phylogenetic methods to the presence of nonneutral convergent sequence evolution. (pnas.org)
Genetics and Evolution2
- Infection, Genetics and Evolution 1: 143-150. (exeter.ac.uk)
- Infection, Genetics and Evolution , 11: 955-959. (exeter.ac.uk)
Nucleic3
- Nucleic acids are attractive materials for creating functional molecules that have applications as catalysts, specific binders, and molecular switches. (mdpi.com)
- These methods have helped explore the potential abilities of nucleic acids and steadily contributed to their evolution, i.e . , creation of RNA/DNA enzymes, aptamers, and aptazymes. (mdpi.com)
- This review focuses on the effectiveness of chemical modifications on the evolution of nucleic acids as functional molecules and the outlook for related technologies. (mdpi.com)
Research9
- Postdoctoral Research Fellow In Molecular Evolution Dr. David OBrochta, University of Maryland Biotechnology Institute, Center for Agricultural Biotechnology wishes to sponsor highly qualified recent Ph.D.s interested in applying for a postdoctoral fellowships in Molecular Evolution sponsored by the National Science Foundation and Alfred P. Sloan Foundation, of the USDA. (bio.net)
- The fellow will be responsible for conducting a research project investigating the evolution of hAT transposable elements in heliothine moths. (bio.net)
- Rasmus Nielsen is certainly one of these researchers, and his work so far has merged many population genetic and phylogenetic aspects of biological research under the umbrella of molecular evolution. (springer.com)
- It reviews the latest advances in research into evolution, focusing on the molecular bases for evolutionary change. (cshlpress.com)
- The Gordon Research Seminar on Molecular Mechanisms in Evolution is a unique forum for graduate students, post-docs, and other scientists with comparable levels of experience and education to present and exchange new data and cutting edge ideas. (grc.org)
- This GRS will be held in conjunction with the "Molecular Mechanisms in Evolution" Gordon Research Conference (GRC). (grc.org)
- Due to the Senckenberg-wide regulations and current recommendations in connection with the corona virus epidemic, the Department of Botany and Molecular Evolutionary Research is closed since 16th March 2020 until further notice for volunteers, visiting researchers and interns. (senckenberg.de)
- Another important basis for our research and teaching is the Grunelius-Möllgaard Lab, a molecular lab that the division runs for Senckenberg, which is open to Senckenberg and guest researchers. (senckenberg.de)
- We hope the work in the current study serves as a resource for both the Coxiella and wider infectious disease research communities interested in the evolution of pathogen virulence. (infectioncontroltoday.com)
Laboratory3
- Coordinated multigene nonneutral molecular convergence events have also been shown to occur in laboratory selection experiments ( 1 ), but have not been observed in nature. (pnas.org)
- We will use laboratory evolution experiments to identify functional DHFR mutations and reproduciblegenetic trajectories leading to elevated trimethoprim resistance. (usda.gov)
- Chiang HHH (2009) The laboratory technology of discrete molecular separation: the historical development of gel electrophoresis and the material epistemology of biomolecular science, 1945-1970. (springer.com)
Recombination1
- Homologous recombination was identified in at least two of five examined hypervariable regions for every virus, suggesting the evolution of HAdV-Ds has been highly dependent on homologous recombination. (harvard.edu)
Systematic2
- There have been few systematic screens for nonneutral molecular convergence, however, so its true frequency in nature remains largely unknown. (pnas.org)
- However, molecular systematic investigations of subgroups revealed that current taxonomy is at odds with evolutionary relationships. (ingentaconnect.com)