Biochemical identification of mutational changes in a nucleotide sequence.
Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories.
The order of amino acids as they occur in a polypeptide chain. This is referred to as the primary structure of proteins. It is of fundamental importance in determining PROTEIN CONFORMATION.
Genetically engineered MUTAGENESIS at a specific site in the DNA molecule that introduces a base substitution, or an insertion or deletion.
Any detectable and heritable change in the genetic material that causes a change in the GENOTYPE and which is transmitted to daughter cells and to succeeding generations.
The sequence of PURINES and PYRIMIDINES in nucleic acids and polynucleotides. It is also called nucleotide sequence.
The parts of a macromolecule that directly participate in its specific combination with another molecule.
Models used experimentally or theoretically to study molecular shape, electronic properties, or interactions; includes analogous molecules, computer-generated graphics, and mechanical structures.
The level of protein structure in which combinations of secondary protein structures (alpha helices, beta sheets, loop regions, and motifs) pack together to form folded shapes called domains. Disulfide bridges between cysteines in two different parts of the polypeptide chain along with other interactions between the chains play a role in the formation and stabilization of tertiary structure. Small proteins usually consist of only one domain but larger proteins may contain a number of domains connected by segments of polypeptide chain which lack regular secondary structure.
The degree of similarity between sequences of amino acids. This information is useful for the analyzing genetic relatedness of proteins and species.
Process of generating a genetic MUTATION. It may occur spontaneously or be induced by MUTAGENS.
The process in which substances, either endogenous or exogenous, bind to proteins, peptides, enzymes, protein precursors, or allied compounds. Specific protein-binding measures are often used as assays in diagnostic assessments.
The naturally occurring or experimentally induced replacement of one or more AMINO ACIDS in a protein with another. If a functionally equivalent amino acid is substituted, the protein may retain wild-type activity. Substitution may also diminish, enhance, or eliminate protein function. Experimentally induced substitution is often used to study enzyme activities and binding site properties.
A mutation caused by the substitution of one nucleotide for another. This results in the DNA molecule having a change in a single base pair.
A sequence of amino acids in a polypeptide or of nucleotides in DNA or RNA that is similar across multiple species. A known set of conserved sequences is represented by a CONSENSUS SEQUENCE. AMINO ACID MOTIFS are often composed of conserved sequences.
The relationship between the chemical structure of a compound and its biological or pharmacological activity. Compounds are often classed together because they have structural characteristics in common including shape, size, stereochemical arrangement, and distribution of functional groups.
The arrangement of two or more amino acid or base sequences from an organism or organisms in such a way as to align areas of the sequences sharing common properties. The degree of relatedness or homology between the sequences is predicted computationally or statistically based on weights assigned to the elements aligned between the sequences. This in turn can serve as a potential indicator of the genetic relatedness between the organisms.
Established cell cultures that have the potential to propagate indefinitely.
Proteins which bind to DNA. The family includes proteins which bind to both double- and single-stranded DNA and also includes specific DNA binding proteins in serum which can be used as markers for malignant diseases.
DNA sequences which are recognized (directly or indirectly) and bound by a DNA-dependent RNA polymerase during the initiation of transcription. Highly conserved sequences within the promoter include the Pribnow box in bacteria and the TATA BOX in eukaryotes.
Deletion of sequences of nucleic acids from the genetic material of an individual.
A species of gram-negative, facultatively anaerobic, rod-shaped bacteria (GRAM-NEGATIVE FACULTATIVELY ANAEROBIC RODS) commonly found in the lower part of the intestine of warm-blooded animals. It is usually nonpathogenic, but some strains are known to produce DIARRHEA and pyogenic infections. Pathogenic strains (virotypes) are classified by their specific pathogenic mechanisms such as toxins (ENTEROTOXIGENIC ESCHERICHIA COLI), etc.
Commonly observed structural components of proteins formed by simple combinations of adjacent secondary structures. A commonly observed structure may be composed of a CONSERVED SEQUENCE which can be represented by a CONSENSUS SEQUENCE.
Proteins found in any species of bacterium.
Endogenous substances, usually proteins, which are effective in the initiation, stimulation, or termination of the genetic transcription process.
Extrachromosomal, usually CIRCULAR DNA molecules that are self-replicating and transferable from one organism to another. They are found in a variety of bacterial, archaeal, fungal, algal, and plant species. They are used in GENETIC ENGINEERING as CLONING VECTORS.
The biosynthesis of RNA carried out on a template of DNA. The biosynthesis of DNA from an RNA template is called REVERSE TRANSCRIPTION.
Proteins prepared by recombinant DNA technology.
The characteristic 3-dimensional shape of a protein, including the secondary, supersecondary (motifs), tertiary (domains) and quaternary structure of the peptide chain. PROTEIN STRUCTURE, QUATERNARY describes the conformation assumed by multimeric proteins (aggregates of more than one polypeptide chain).
The uptake of naked or purified DNA by CELLS, usually meaning the process as it occurs in eukaryotic cells. It is analogous to bacterial transformation (TRANSFORMATION, BACTERIAL) and both are routinely employed in GENE TRANSFER TECHNIQUES.
A mutation in which a codon is mutated to one directing the incorporation of a different amino acid. This substitution may result in an inactive or unstable product. (From A Dictionary of Genetics, King & Stansfield, 5th ed)
The spatial arrangement of the atoms of a nucleic acid or polynucleotide that results in its characteristic 3-dimensional shape.
Recombinant proteins produced by the GENETIC TRANSLATION of fused genes formed by the combination of NUCLEIC ACID REGULATORY SEQUENCES of one or more genes with the protein coding sequences of one or more genes.
The level of protein structure in which regular hydrogen-bond interactions within contiguous stretches of polypeptide chain give rise to alpha helices, beta strands (which align to form beta sheets) or other types of coils. This is the first folding level of protein conformation.
A species of the genus SACCHAROMYCES, family Saccharomycetaceae, order Saccharomycetales, known as "baker's" or "brewer's" yeast. The dried form is used as a dietary supplement.
The insertion of recombinant DNA molecules from prokaryotic and/or eukaryotic sources into a replicating vehicle, such as a plasmid or virus vector, and the introduction of the resultant hybrid molecules into recipient cells without altering the viability of those cells.
Short sequences (generally about 10 base pairs) of DNA that are complementary to sequences of messenger RNA and allow reverse transcriptases to start copying the adjacent sequences of mRNA. Primers are used extensively in genetic and molecular biology techniques.
The study of crystal structure using X-RAY DIFFRACTION techniques. (McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed)
Any of the processes by which cytoplasmic or intercellular factors influence the differential control of gene action in bacteria.
A non-essential amino acid that occurs in high levels in its free state in plasma. It is produced from pyruvate by transamination. It is involved in sugar and acid metabolism, increases IMMUNITY, and provides energy for muscle tissue, BRAIN, and the CENTRAL NERVOUS SYSTEM.
The region of an enzyme that interacts with its substrate to cause the enzymatic reaction.
Variation in a population's DNA sequence that is detected by determining alterations in the conformation of denatured DNA fragments. Denatured DNA fragments are allowed to renature under conditions that prevent the formation of double-stranded DNA and allow secondary structure to form in single stranded fragments. These fragments are then run through polyacrylamide gels to detect variations in the secondary structure that is manifested as an alteration in migration through the gels.
Proteins found in any species of virus.
The outward appearance of the individual. It is the product of interactions between genes, and between the GENOTYPE and the environment.
A characteristic feature of enzyme activity in relation to the kind of substrate on which the enzyme or catalytic molecule reacts.
Proteins obtained from ESCHERICHIA COLI.
Mutagenesis where the mutation is caused by the introduction of foreign DNA sequences into a gene or extragenic sequence. This may occur spontaneously in vivo or be experimentally induced in vivo or in vitro. Proviral DNA insertions into or adjacent to a cellular proto-oncogene can interrupt GENETIC TRANSLATION of the coding sequences or interfere with recognition of regulatory elements and cause unregulated expression of the proto-oncogene resulting in tumor formation.
A deoxyribonucleotide polymer that is the primary genetic material of all cells. Eukaryotic and prokaryotic organisms normally contain DNA in a double-stranded state, yet several important biological processes transiently involve single-stranded regions. DNA, which consists of a polysugar-phosphate backbone possessing projections of purines (adenine and guanine) and pyrimidines (thymine and cytosine), forms a double helix that is held together by hydrogen bonds between these purines and pyrimidines (adenine to thymine and guanine to cytosine).
The process by which two molecules of the same chemical composition form a condensation product or polymer.
A theoretical representative nucleotide or amino acid sequence in which each nucleotide or amino acid is the one which occurs most frequently at that site in the different sequences which occur in nature. The phrase also refers to an actual sequence which approximates the theoretical consensus. A known CONSERVED SEQUENCE set is represented by a consensus sequence. Commonly observed supersecondary protein structures (AMINO ACID MOTIFS) are often formed by conserved sequences.
A test used to determine whether or not complementation (compensation in the form of dominance) will occur in a cell with a given mutant phenotype when another mutant genome, encoding the same mutant phenotype, is introduced into that cell.
The first continuously cultured human malignant CELL LINE, derived from the cervical carcinoma of Henrietta Lacks. These cells are used for VIRUS CULTIVATION and antitumor drug screening assays.
CELL LINES derived from the CV-1 cell line by transformation with a replication origin defective mutant of SV40 VIRUS, which codes for wild type large T antigen (ANTIGENS, POLYOMAVIRUS TRANSFORMING). They are used for transfection and cloning. (The CV-1 cell line was derived from the kidney of an adult male African green monkey (CERCOPITHECUS AETHIOPS).)
The facilitation of a chemical reaction by material (catalyst) that is not consumed by the reaction.
In vitro method for producing large amounts of specific DNA or RNA fragments of defined length and sequence from small amounts of short oligonucleotide flanking sequences (primers). The essential steps include thermal denaturation of the double-stranded target molecules, annealing of the primers to their complementary sequences, and extension of the annealed primers by enzymatic synthesis with DNA polymerase. The reaction is efficient, specific, and extremely sensitive. Uses for the reaction include disease diagnosis, detection of difficult-to-isolate pathogens, mutation analysis, genetic testing, DNA sequencing, and analyzing evolutionary relationships.
The rate dynamics in chemical or physical systems.
The parts of a transcript of a split GENE remaining after the INTRONS are removed. They are spliced together to become a MESSENGER RNA or other functional RNA.
A genetic rearrangement through loss of segments of DNA or RNA, bringing sequences which are normally separated into close proximity. This deletion may be detected using cytogenetic techniques and can also be inferred from the phenotype, indicating a deletion at one specific locus.
Proteins which are found in membranes including cellular and intracellular membranes. They consist of two types, peripheral and integral proteins. They include most membrane-associated enzymes, antigenic proteins, transport proteins, and drug, hormone, and lectin receptors.
Proteins which maintain the transcriptional quiescence of specific GENES or OPERONS. Classical repressor proteins are DNA-binding proteins that are normally bound to the OPERATOR REGION of an operon, or the ENHANCER SEQUENCES of a gene until a signal occurs that causes their release.
Proteins produced from GENES that have acquired MUTATIONS.
Proteins obtained from the species SACCHAROMYCES CEREVISIAE. The function of specific proteins from this organism are the subject of intense scientific interest and have been used to derive basic understanding of the functioning similar proteins in higher eukaryotes.
Proteins found in the nucleus of a cell. Do not confuse with NUCLEOPROTEINS which are proteins conjugated with nucleic acids, that are not necessarily present in the nucleus.
Transport proteins that carry specific substances in the blood or across cell membranes.
Use of restriction endonucleases to analyze and generate a physical map of genomes, genes, or other segments of DNA.
Processes that stimulate the GENETIC TRANSCRIPTION of a gene or set of genes.
Ribonucleic acid that makes up the genetic material of viruses.
Diffusible gene products that act on homologous or heterologous molecules of viral or cellular DNA to regulate the expression of proteins.
Cis-acting DNA sequences which can increase transcription of genes. Enhancers can usually function in either orientation and at various distances from a promoter.
The introduction of a phosphoryl group into a compound through the formation of an ester bond between the compound and a phosphorus moiety.
A group of deoxyribonucleotides (up to 12) in which the phosphate residues of each deoxyribonucleotide act as bridges in forming diester linkages between the deoxyribose moieties.
The functional hereditary units of BACTERIA.
A species of CERCOPITHECUS containing three subspecies: C. tantalus, C. pygerythrus, and C. sabeus. They are found in the forests and savannah of Africa. The African green monkey (C. pygerythrus) is the natural host of SIMIAN IMMUNODEFICIENCY VIRUS and is used in AIDS research.
A sequence of successive nucleotide triplets that are read as CODONS specifying AMINO ACIDS and begin with an INITIATOR CODON and end with a stop codon (CODON, TERMINATOR).
A non-essential amino acid occurring in natural form as the L-isomer. It is synthesized from GLYCINE or THREONINE. It is involved in the biosynthesis of PURINES; PYRIMIDINES; and other amino acids.
A multistage process that includes cloning, physical mapping, subcloning, determination of the DNA SEQUENCE, and information analysis.
A thiol-containing non-essential amino acid that is oxidized to form CYSTINE.
Proteins found in any species of fungus.
Nucleic acid sequences involved in regulating the expression of genes.
Genes whose expression is easily detectable and therefore used to study promoter activity at many positions in a target genome. In recombinant DNA technology, these genes may be attached to a promoter region of interest.
The intracellular transfer of information (biological activation/inhibition) through a signal pathway. In each signal transduction system, an activation/inhibition signal from a biologically active molecule (hormone, neurotransmitter) is mediated via the coupling of a receptor/enzyme to a second messenger system or to an ion channel. Signal transduction plays an important role in activating cellular functions, cell differentiation, and cell proliferation. Examples of signal transduction systems are the GAMMA-AMINOBUTYRIC ACID-postsynaptic receptor-calcium ion channel system, the receptor-mediated T-cell activation pathway, and the receptor-mediated activation of phospholipases. Those coupled to membrane depolarization or intracellular release of calcium include the receptor-mediated activation of cytotoxic functions in granulocytes and the synaptic potentiation of protein kinase activation. Some signal transduction pathways may be part of larger signal transduction pathways; for example, protein kinase activation is part of the platelet activation signal pathway.
RNA sequences that serve as templates for protein synthesis. Bacterial mRNAs are generally primary transcripts in that they do not require post-transcriptional processing. Eukaryotic mRNA is synthesized in the nucleus and must be exported to the cytoplasm for translation. Most eukaryotic mRNAs have a sequence of polyadenylic acid at the 3' end, referred to as the poly(A) tail. The function of this tail is not known for certain, but it may play a role in the export of mature mRNA from the nucleus as well as in helping stabilize some mRNA molecules by retarding their degradation in the cytoplasm.
Any of the processes by which cytoplasmic factors influence the differential control of gene action in viruses.
The process of intracellular viral multiplication, consisting of the synthesis of PROTEINS; NUCLEIC ACIDS; and sometimes LIPIDS, and their assembly into a new infectious particle.
The record of descent or ancestry, particularly of a particular condition or trait, indicating individual family members, their relationships, and their status with respect to the trait or condition.
A type of mutation in which a number of NUCLEOTIDES deleted from or inserted into a protein coding sequence is not divisible by three, thereby causing an alteration in the READING FRAMES of the entire coding sequence downstream of the mutation. These mutations may be induced by certain types of MUTAGENS or may occur spontaneously.
In bacteria, a group of metabolically related genes, with a common promoter, whose transcription into a single polycistronic MESSENGER RNA is under the control of an OPERATOR REGION.
Sequences of DNA in the genes that are located between the EXONS. They are transcribed along with the exons but are removed from the primary gene transcript by RNA SPLICING to leave mature RNA. Some introns code for separate genes.
The sequential correspondence of nucleotides in one nucleic acid molecule with those of another nucleic acid molecule. Sequence homology is an indication of the genetic relatedness of different organisms and gene function.
Deoxyribonucleic acid that makes up the genetic material of bacteria.
Deoxyribonucleic acid that makes up the genetic material of viruses.
A species of the Chenopodium genus which is the source of edible seed called quinoa. It contains makisterone A and other STEROIDS, some having ECDYSTEROID activity on insects.
The ultimate exclusion of nonsense sequences or intervening sequences (introns) before the final RNA transcript is sent to the cytoplasm.
The part of a cell that contains the CYTOSOL and small structures excluding the CELL NUCLEUS; MITOCHONDRIA; and large VACUOLES. (Glick, Glossary of Biochemistry and Molecular Biology, 1990)
The biosynthesis of PEPTIDES and PROTEINS on RIBOSOMES, directed by MESSENGER RNA, via TRANSFER RNA that is charged with standard proteinogenic AMINO ACIDS.
An electrophoretic technique for assaying the binding of one compound to another. Typically one compound is labeled to follow its mobility during electrophoresis. If the labeled compound is bound by the other compound, then the mobility of the labeled compound through the electrophoretic medium will be retarded.
Variant forms of the same gene, occupying the same locus on homologous CHROMOSOMES, and governing the variants in production of the same gene product.
Amino acid sequences found in transported proteins that selectively guide the distribution of the proteins to specific cellular compartments.
An essential amino acid occurring naturally in the L-form, which is the active form. It is found in eggs, milk, gelatin, and other proteins.
The process of cleaving a chemical compound by the addition of a molecule of water.
An essential amino acid. It is often added to animal feed.
Any of the processes by which nuclear, cytoplasmic, or intercellular factors influence the differential control (induction or repression) of gene action at the level of transcription or translation.
Within a eukaryotic cell, a membrane-limited body which contains chromosomes and one or more nucleoli (CELL NUCLEOLUS). The nuclear membrane consists of a double unit-type membrane which is perforated by a number of pores; the outermost membrane is continuous with the ENDOPLASMIC RETICULUM. A cell may contain more than one nucleus. (From Singleton & Sainsbury, Dictionary of Microbiology and Molecular Biology, 2d ed)
A group of enzymes which catalyze the hydrolysis of ATP. The hydrolysis reaction is usually coupled with another function such as transporting Ca(2+) across a membrane. These enzymes may be dependent on Ca(2+), Mg(2+), anions, H+, or DNA.
Screening techniques first developed in yeast to identify genes encoding interacting proteins. Variations are used to evaluate interplay between proteins and other molecules. Two-hybrid techniques refer to analysis for protein-protein interactions, one-hybrid for DNA-protein interactions, three-hybrid interactions for RNA-protein interactions or ligand-based interactions. Reverse n-hybrid techniques refer to analysis for mutations or other small molecules that dissociate known interactions.
Linear POLYPEPTIDES that are synthesized on RIBOSOMES and may be further modified, crosslinked, cleaved, or assembled into complex proteins with several subunits. The specific sequence of AMINO ACIDS determines the shape the polypeptide will take, during PROTEIN FOLDING, and the function of the protein.
The functional hereditary units of VIRUSES.
An enzyme that catalyzes the acetylation of chloramphenicol to yield chloramphenicol 3-acetate. Since chloramphenicol 3-acetate does not bind to bacterial ribosomes and is not an inhibitor of peptidyltransferase, the enzyme is responsible for the naturally occurring chloramphenicol resistance in bacteria. The enzyme, for which variants are known, is found in both gram-negative and gram-positive bacteria. EC 2.3.1.28.
Motifs in DNA- and RNA-binding proteins whose amino acids are folded into a single structural unit around a zinc atom. In the classic zinc finger, one zinc atom is bound to two cysteines and two histidines. In between the cysteines and histidines are 12 residues which form a DNA binding fingertip. By variations in the composition of the sequences in the fingertip and the number and spacing of tandem repeats of the motif, zinc fingers can form a large number of different sequence specific binding sites.
Single-stranded complementary DNA synthesized from an RNA template by the action of RNA-dependent DNA polymerase. cDNA (i.e., complementary DNA, not circular DNA, not C-DNA) is used in a variety of molecular cloning experiments as well as serving as a specific hybridization probe.
A non-essential amino acid. In animals it is synthesized from PHENYLALANINE. It is also the precursor of EPINEPHRINE; THYROID HORMONES; and melanin.
Products of proto-oncogenes. Normally they do not have oncogenic or transforming properties, but are involved in the regulation or differentiation of cell growth. They often have protein kinase activity.
A molecule that binds to another molecule, used especially to refer to a small molecule that binds specifically to a larger molecule, e.g., an antigen binding to an antibody, a hormone or neurotransmitter binding to a receptor, or a substrate or allosteric effector binding to an enzyme. Ligands are also molecules that donate or accept a pair of electrons to form a coordinate covalent bond with the central metal atom of a coordination complex. (From Dorland, 27th ed)
The degree of 3-dimensional shape similarity between proteins. It can be an indication of distant AMINO ACID SEQUENCE HOMOLOGY and used for rational DRUG DESIGN.
The characteristic 3-dimensional shape and arrangement of multimeric proteins (aggregates of more than one polypeptide chain).
Processes involved in the formation of TERTIARY PROTEIN STRUCTURE.
Any of various enzymatically catalyzed post-translational modifications of PEPTIDES or PROTEINS in the cell of origin. These modifications include carboxylation; HYDROXYLATION; ACETYLATION; PHOSPHORYLATION; METHYLATION; GLYCOSYLATION; ubiquitination; oxidation; proteolysis; and crosslinking and result in changes in molecular weight and electrophoretic motility.
A non-essential amino acid that is synthesized from GLUTAMIC ACID. It is an essential component of COLLAGEN and is important for proper functioning of joints and tendons.
A plant genus of the family POACEAE. Folin is the water-soluble extract from Sasa albomarginata. Sasa kurinensis is an ingredient of Sho-ju-sen, a Japanese herbal medicine.
A subfamily in the family MURIDAE, comprising the hamsters. Four of the more common genera are Cricetus, CRICETULUS; MESOCRICETUS; and PHODOPUS.
One of the non-essential amino acids commonly occurring in the L-form. It is found in animals and plants, especially in sugar cane and sugar beets. It may be a neurotransmitter.
A polynucleotide consisting essentially of chains with a repeating backbone of phosphate and ribose units to which nitrogenous bases are attached. RNA is unique among biological macromolecules in that it can encode genetic information, serve as an abundant structural component of cells, and also possesses catalytic activity. (Rieger et al., Glossary of Genetics: Classical and Molecular, 5th ed)
Promoter-specific RNA polymerase II transcription factor that binds to the GC box, one of the upstream promoter elements, in mammalian cells. The binding of Sp1 is necessary for the initiation of transcription in the promoters of a variety of cellular and viral GENES.
A change from planar to elliptic polarization when an initially plane-polarized light wave traverses an optically active medium. (McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed)
A set of three nucleotides in a protein coding sequence that specifies individual amino acids or a termination signal (CODON, TERMINATOR). Most codons are universal, but some organisms do not produce the transfer RNAs (RNA, TRANSFER) complementary to all codons. These codons are referred to as unassigned codons (CODONS, NONSENSE).
Actual loss of portion of a chromosome.
The sequence at the 5' end of the messenger RNA that does not code for product. This sequence contains the ribosome binding site and other transcription and translation regulating sequences.
The assembly of the QUATERNARY PROTEIN STRUCTURE of multimeric proteins (MULTIPROTEIN COMPLEXES) from their composite PROTEIN SUBUNITS.
The phenotypic manifestation of a gene or genes by the processes of GENETIC TRANSCRIPTION and GENETIC TRANSLATION.
An essential amino acid that is required for the production of HISTAMINE.
The lipid- and protein-containing, selectively permeable membrane that surrounds the cytoplasm in prokaryotic and eukaryotic cells.
Cells propagated in vitro in special media conducive to their growth. Cultured cells are used to study developmental, morphologic, metabolic, physiologic, and genetic processes, among others.
The functional hereditary units of FUNGI.
Proteins that bind to RNA molecules. Included here are RIBONUCLEOPROTEINS and other proteins whose function is to bind specifically to RNA.
RNA transcripts of the DNA that are in some unfinished stage of post-transcriptional processing (RNA PROCESSING, POST-TRANSCRIPTIONAL) required for function. RNA precursors may undergo several steps of RNA SPLICING during which the phosphodiester bonds at exon-intron boundaries are cleaved and the introns are excised. Consequently a new bond is formed between the ends of the exons. Resulting mature RNAs can then be used; for example, mature mRNA (RNA, MESSENGER) is used as a template for protein production.
An essential amino acid that is physiologically active in the L-form.
A group of enzymes that catalyze the hydrolysis of diphosphate bonds in compounds such as nucleoside di- and tri-phosphates, and sulfonyl-containing anhydrides such as adenylylsulfate. (Enzyme Nomenclature, 1992) EC 3.6.
A group of enzymes that catalyzes the hydrolysis of terminal, non-reducing beta-D-galactose residues in beta-galactosides. Deficiency of beta-Galactosidase A1 may cause GANGLIOSIDOSIS, GM1.
The process of moving proteins from one cellular compartment (including extracellular) to another by various sorting and transport mechanisms such as gated transport, protein translocation, and vesicular transport.
Electrophoresis in which a polyacrylamide gel is used as the diffusion medium.
Cells grown in vitro from neoplastic tissue. If they can be established as a TUMOR CELL LINE, they can be propagated in cell culture indefinitely.
The process by which a DNA molecule is duplicated.
Theoretical representations that simulate the behavior or activity of biological processes or diseases. For disease models in living animals, DISEASE MODELS, ANIMAL is available. Biological models include the use of mathematical equations, computers, and other electronic equipment.
A species of gram-positive bacteria that is a common soil and water saprophyte.
Protein modules with conserved ligand-binding surfaces which mediate specific interaction functions in SIGNAL TRANSDUCTION PATHWAYS and the specific BINDING SITES of their cognate protein LIGANDS.
An essential branched-chain amino acid important for hemoglobin formation.
Cell lines whose original growing procedure consisted being transferred (T) every 3 days and plated at 300,000 cells per plate (J Cell Biol 17:299-313, 1963). Lines have been developed using several different strains of mice. Tissues are usually fibroblasts derived from mouse embryos but other types and sources have been developed as well. The 3T3 lines are valuable in vitro host systems for oncogenic virus transformation studies, since 3T3 cells possess a high sensitivity to CONTACT INHIBITION.
A set of genes descended by duplication and variation from some ancestral gene. Such genes may be clustered together on the same chromosome or dispersed on different chromosomes. Examples of multigene families include those that encode the hemoglobins, immunoglobulins, histocompatibility antigens, actins, tubulins, keratins, collagens, heat shock proteins, salivary glue proteins, chorion proteins, cuticle proteins, yolk proteins, and phaseolins, as well as histones, ribosomal RNA, and transfer RNA genes. The latter three are examples of reiterated genes, where hundreds of identical genes are present in a tandem array. (King & Stanfield, A Dictionary of Genetics, 4th ed)
Single chains of amino acids that are the units of multimeric PROTEINS. Multimeric proteins can be composed of identical or non-identical subunits. One or more monomeric subunits may compose a protomer which itself is a subunit structure of a larger assembly.
Deoxyribonucleic acid that makes up the genetic material of fungi.
Organic compounds that generally contain an amino (-NH2) and a carboxyl (-COOH) group. Twenty alpha-amino acids are the subunits which are polymerized to form proteins.
The type species of LENTIVIRUS and the etiologic agent of AIDS. It is characterized by its cytopathic effect and affinity for the T4-lymphocyte.
Short, predominantly basic amino acid sequences identified as nuclear import signals for some proteins. These sequences are believed to interact with specific receptors at the NUCLEAR PORE.
An adenine nucleotide containing three phosphate groups esterified to the sugar moiety. In addition to its crucial roles in metabolism adenosine triphosphate is a neurotransmitter.
A family of anaerobic METHANOCOCCALES whose organisms are motile by means of flagella. These methanogens use carbon dioxide as an electron acceptor.
Identification of proteins or peptides that have been electrophoretically separated by blot transferring from the electrophoresis gel to strips of nitrocellulose paper, followed by labeling with antibody probes.
A conserved A-T rich sequence which is contained in promoters for RNA polymerase II. The segment is seven base pairs long and the nucleotides most commonly found are TATAAAA.
The in vitro fusion of GENES by RECOMBINANT DNA techniques to analyze protein behavior or GENE EXPRESSION REGULATION, or to merge protein functions for specific medical or industrial uses.
Products of viral oncogenes, most commonly retroviral oncogenes. They usually have transforming and often protein kinase activities.
A process whereby multiple RNA transcripts are generated from a single gene. Alternative splicing involves the splicing together of other possible sets of EXONS during the processing of some, but not all, transcripts of the gene. Thus a particular exon may be connected to any one of several alternative exons to form a mature RNA. The alternative forms of mature MESSENGER RNA produce PROTEIN ISOFORMS in which one part of the isoforms is common while the other parts are different.
The interaction of two or more substrates or ligands with the same binding site. The displacement of one by the other is used in quantitative and selective affinity measurements.
An essential aromatic amino acid that is a precursor of MELANIN; DOPAMINE; noradrenalin (NOREPINEPHRINE), and THYROXINE.
Members of the class of compounds composed of AMINO ACIDS joined together by peptide bonds between adjacent amino acids into linear, branched or cyclical structures. OLIGOPEPTIDES are composed of approximately 2-12 amino acids. Polypeptides are composed of approximately 13 or more amino acids. PROTEINS are linear polypeptides that are normally synthesized on RIBOSOMES.
Enzymes that oxidize certain LUMINESCENT AGENTS to emit light (PHYSICAL LUMINESCENCE). The luciferases from different organisms have evolved differently so have different structures and substrates.
CELL LINE derived from the ovary of the Chinese hamster, Cricetulus griseus (CRICETULUS). The species is a favorite for cytogenetic studies because of its small chromosome number. The cell line has provided model systems for the study of genetic alterations in cultured mammalian cells.
Any of the processes by which nuclear, cytoplasmic, or intercellular factors influence the differential control of gene action in enzyme synthesis.
The complete genetic complement contained in a DNA or RNA molecule in a virus.
A broad category of carrier proteins that play a role in SIGNAL TRANSDUCTION. They generally contain several modular domains, each of which having its own binding activity, and act by forming complexes with other intracellular-signaling molecules. Signal-transducing adaptor proteins lack enzyme activity, however their activity can be modulated by other signal-transducing enzymes
Genes that influence the PHENOTYPE both in the homozygous and the heterozygous state.
Enzymes that catalyze DNA template-directed extension of the 3'-end of an RNA strand one nucleotide at a time. They can initiate a chain de novo. In eukaryotes, three forms of the enzyme have been distinguished on the basis of sensitivity to alpha-amanitin, and the type of RNA synthesized. (From Enzyme Nomenclature, 1992).
Genes which regulate or circumscribe the activity of other genes; specifically, genes which code for PROTEINS or RNAs which have GENE EXPRESSION REGULATION functions.
Ribonucleic acid in bacteria having regulatory and catalytic roles as well as involvement in protein synthesis.
Synthetic or natural oligonucleotides used in hybridization studies in order to identify and study specific nucleic acid fragments, e.g., DNA segments near or within a specific gene locus or gene. The probe hybridizes with a specific mRNA, if present. Conventional techniques used for testing for the hybridization product include dot blot assays, Southern blot assays, and DNA:RNA hybrid-specific antibody tests. Conventional labels for the probe include the radioisotope labels 32P and 125I and the chemical label biotin.
Proteins encoded by a VIRAL GENOME that are produced in the organisms they infect, but not packaged into the VIRUS PARTICLES. Some of these proteins may play roles within the infected cell during VIRUS REPLICATION or act in regulation of virus replication or VIRUS ASSEMBLY.
Phosphoproteins are proteins that have been modified by the attachment of a phosphate group, which can regulate their activity and function in various cellular processes.
A method for determining the sequence specificity of DNA-binding proteins. DNA footprinting utilizes a DNA damaging agent (either a chemical reagent or a nuclease) which cleaves DNA at every base pair. DNA cleavage is inhibited where the ligand binds to DNA. (from Rieger et al., Glossary of Genetics: Classical and Molecular, 5th ed)
Proteins encoded by homeobox genes (GENES, HOMEOBOX) that exhibit structural similarity to certain prokaryotic and eukaryotic DNA-binding proteins. Homeodomain proteins are involved in the control of gene expression during morphogenesis and development (GENE EXPRESSION REGULATION, DEVELOPMENTAL).
Any method used for determining the location of and relative distances between genes on a chromosome.
Compounds and molecular complexes that consist of very large numbers of atoms and are generally over 500 kDa in size. In biological systems macromolecular substances usually can be visualized using ELECTRON MICROSCOPY and are distinguished from ORGANELLES by the lack of a membrane structure.
An essential amino acid that is necessary for normal growth in infants and for NITROGEN balance in adults. It is a precursor of INDOLE ALKALOIDS in plants. It is a precursor of SEROTONIN (hence its use as an antidepressant and sleep aid). It can be a precursor to NIACIN, albeit inefficiently, in mammals.
Polymers made up of a few (2-20) nucleotides. In molecular genetics, they refer to a short sequence synthesized to match a region where a mutation is known to occur, and then used as a probe (OLIGONUCLEOTIDE PROBES). (Dorland, 28th ed)
Conversion of an inactive form of an enzyme to one possessing metabolic activity. It includes 1, activation by ions (activators); 2, activation by cofactors (coenzymes); and 3, conversion of an enzyme precursor (proenzyme or zymogen) to an active enzyme.
The first DNA-binding protein motif to be recognized. Helix-turn-helix motifs were originally identified in bacterial proteins but have since been found in hundreds of DNA-BINDING PROTEINS from both eukaryotes and prokaryotes. They are constructed from two alpha helices connected by a short extended chain of amino acids, which constitute the "turn." The two helices are held at a fixed angle, primarily through interactions between the two helices. (From Alberts et al., Molecular Biology of the Cell, 3d ed, p408-9)
Membrane proteins whose primary function is to facilitate the transport of molecules across a biological membrane. Included in this broad category are proteins involved in active transport (BIOLOGICAL TRANSPORT, ACTIVE), facilitated transport and ION CHANNELS.
A plant genus of the family SOLANACEAE. Members contain NICOTINE and other biologically active chemicals; its dried leaves are used for SMOKING.
An amino acid-specifying codon that has been converted to a stop codon (CODON, TERMINATOR) by mutation. Its occurance is abnormal causing premature termination of protein translation and results in production of truncated and non-functional proteins. A nonsense mutation is one that converts an amino acid-specific codon to a stop codon.
A metallic element of atomic number 30 and atomic weight 65.38. It is a necessary trace element in the diet, forming an essential part of many enzymes, and playing an important role in protein synthesis and in cell division. Zinc deficiency is associated with ANEMIA, short stature, HYPOGONADISM, impaired WOUND HEALING, and geophagia. It is known by the symbol Zn.
The assembly of VIRAL STRUCTURAL PROTEINS and nucleic acid (VIRAL DNA or VIRAL RNA) to form a VIRUS PARTICLE.
Proteins that originate from insect species belonging to the genus DROSOPHILA. The proteins from the most intensely studied species of Drosophila, DROSOPHILA MELANOGASTER, are the subject of much interest in the area of MORPHOGENESIS and development.
Virulent bacteriophage and type species of the genus T4-like phages, in the family MYOVIRIDAE. It infects E. coli and is the best known of the T-even phages. Its virion contains linear double-stranded DNA, terminally redundant and circularly permuted.
A non-essential amino acid naturally occurring in the L-form. Glutamic acid is the most common excitatory neurotransmitter in the CENTRAL NERVOUS SYSTEM.
Regions of AMINO ACID SEQUENCE similarity in the SRC-FAMILY TYROSINE KINASES that fold into specific functional tertiary structures. The SH1 domain is a CATALYTIC DOMAIN. SH2 and SH3 domains are protein interaction domains. SH2 usually binds PHOSPHOTYROSINE-containing proteins and SH3 interacts with CYTOSKELETAL PROTEINS.
DNA-binding motifs formed from two alpha-helixes which intertwine for about eight turns into a coiled coil and then bifurcate to form Y shaped structures. Leucines occurring in heptad repeats end up on the same sides of the helixes and are adjacent to each other in the stem of the Y (the "zipper" region). The DNA-binding residues are located in the bifurcated region of the Y.
Proteins which are synthesized as a single polymer and then cleaved into several distinct proteins.
An enzyme that catalyses RNA-template-directed extension of the 3'- end of an RNA strand by one nucleotide at a time, and can initiate a chain de novo. (Enzyme Nomenclature, 1992, p293)
A family of proteins that promote unwinding of RNA during splicing and translation.
Serologic tests in which a positive reaction manifested by visible CHEMICAL PRECIPITATION occurs when a soluble ANTIGEN reacts with its precipitins, i.e., ANTIBODIES that can form a precipitate.
A transferase that catalyzes the addition of aliphatic, aromatic, or heterocyclic FREE RADICALS as well as EPOXIDES and arene oxides to GLUTATHIONE. Addition takes place at the SULFUR. It also catalyzes the reduction of polyol nitrate by glutathione to polyol and nitrite.
The chemical or biochemical addition of carbohydrate or glycosyl groups to other chemicals, especially peptides or proteins. Glycosyl transferases are used in this biochemical reaction.
Amino acids with side chains that are negatively charged at physiological pH.
Short chains of RNA (100-300 nucleotides long) that are abundant in the nucleus and usually complexed with proteins in snRNPs (RIBONUCLEOPROTEINS, SMALL NUCLEAR). Many function in the processing of messenger RNA precursors. Others, the snoRNAs (RNA, SMALL NUCLEOLAR), are involved with the processing of ribosomal RNA precursors.
A genus of owlet moths of the family Noctuidae. These insects are used in molecular biology studies during all stages of their life cycle.

Correlation between the status of the p53 gene and survival in patients with stage I non-small cell lung carcinoma. (1/15602)

The association of p53 abnormalities with the prognosis of patients with non-small cell lung carcinoma (NSCLC) has been extensively investigated to date, however, this association is still controversial. Therefore, we investigated the prognostic significance of p53 mutations through exons 2 to 11 and p53 protein expression in 103 cases of stage I NSCLC. p53 mutations were detected in 49 of 103 (48%) tumors. Two separate mutations were detected in four tumors giving a total of 53 unique mutations in 49 tumors. Ten (19%) of mutations occurred outside exons 5-8. Positive immunohistochemical staining of p53 protein was detected in 41 of 103 (40%) tumors. The concordance rate between mutations and protein overexpression was only 69%. p53 mutations, but not expression, were significantly associated with a shortened survival of patients (P<0.001). Furthermore, we investigated the correlation between the types of p53 mutations and prognosis. p53 missense mutations rather than null mutations were associated with poor prognosis (P < 0.001 in missense mutations and P=0.243 in null mutations). These results indicated that p53 mutations, in particular missense mutations, rather than p53 expression could be a useful molecular marker for the prognosis of patients with surgically resected stage I NSCLC.  (+info)

Altered trafficking of lysosomal proteins in Hermansky-Pudlak syndrome due to mutations in the beta 3A subunit of the AP-3 adaptor. (2/15602)

Hermansky-Pudlak syndrome (HPS) is a genetic disorder characterized by defective lysosome-related organelles. Here, we report the identification of two HPS patients with mutations in the beta 3A subunit of the heterotetrameric AP-3 complex. The patients' fibroblasts exhibit drastically reduced levels of AP-3 due to enhanced degradation of mutant beta 3A. The AP-3 deficiency results in increased surface expression of the lysosomal membrane proteins CD63, lamp-1, and lamp-2, but not of nonlysosomal proteins. These differential effects are consistent with the preferential interaction of the AP-3 mu 3A subunit with tyrosine-based signals involved in lysosomal targeting. Our results suggest that AP-3 functions in protein sorting to lysosomes and provide an example of a human disease in which altered trafficking of integral membrane proteins is due to mutations in a component of the sorting machinery.  (+info)

p53 status of newly established acute myeloid leukaemia cell lines. (3/15602)

We analysed the status of the p53 gene and protein in eight newly established acute myeloid leukaemia (AML) cell lines representing blast cells of either de novo leukaemia patients in first remission or patients with relapsed and chemotherapy-resistant disease causing their death. There were no mutations in the p53 gene in any of the cell lines as analysed by single-strand conformation polymorphism of amplified exons 5-8. However, the p53 protein was clearly and consistently expressed in all of these cell lines, as shown by immunohistochemistry, Western blotting and flow cytometry. The consistently expressed p53 protein was located in both the nucleus and the cytoplasm of all the cell lines and, as shown by flow cytometry, it was mostly in a conformation typical of the mutated protein. These AML cell lines offer a tool for studying the production and function of the p53 protein and its possible role in cell cycle regulation and chemoresistance as well as in the regulation of apoptosis in AML.  (+info)

Genomic structure and alterations of homeobox gene CDX2 in colorectal carcinomas. (4/15602)

Expression of CDX2, a caudal-related homeobox gene, was found to be decreased in colorectal carcinomas. Heterozygous null mutant mice as to Cdx2 develop multiple intestinal adenomatous polyps. To clarify the role of CDX2 in colorectal carcinogenesis, we determined its genomic structure, and searched for mutations of CDX2 in 49 sporadic colorectal carcinomas and ten hereditary non-polyposis colorectal cancers (HNPCC) without microsatellite instability. None of them exhibited a mutation. We further examined 19 HNPCC carcinomas with microsatellite instability for mutations in a (G)7 repeat site within CDX2. One of them (5.3%) exhibited one G insertion. Loss of heterozygosity was observed in 2 of the 20 (10%) informative sporadic carcinomas, and in one of the three (33.3%) informative HNPCC cancers. These data indicate that CDX2 may play only a minor role in colorectal carcinogenesis.  (+info)

Analysis of TSG101 tumour susceptibility gene transcripts in cervical and endometrial cancers. (5/15602)

Carcinoma of the uterine cervix is a common malignancy among women that has been found to show loss of heterozygosity in the chromosome 11p. Recent studies have localized the TSG101 gene in this region, and also demonstrated a high frequency of abnormalities of this gene in human breast cancer. To determine the role of the TSG101 gene in the carcinogenesis of cervical and uterine carcinoma, 19 cases of cervical carcinoma and five cases of endometrial carcinoma, as well as nearby non-cancerous tissue from the same patients, and 16 blood samples from healthy persons as normal control were analysed by Southern blot analysis of genomic DNA, reverse transcription of the TSG101 mRNA followed by PCR amplification and sequencing of the products. We found that abnormal transcripts of the TSG101 gene were common both in cancerous or non-cancerous tissues of the uterus and cervix and in normal peripheral mononuclear cells. There was no genomic deletion or rearrangement in spite of the presence of abnormal transcripts, and no definite relationship between the abnormal transcripts and HPV infection was found. Although the frequency of abnormal transcripts was higher in cancerous than in non-cancerous tissue, normal peripheral mononuclear cells also had abnormal transcripts. Given these findings, the role of the TSG101 gene as a tumour-suppressor gene should be re-evaluated. Because some aberrant transcripts could be found at the first PCR reaction, we suggest that the aberrant transcripts might be the result of imperfect minor splicesome products.  (+info)

Microsatellite instability, Epstein-Barr virus, mutation of type II transforming growth factor beta receptor and BAX in gastric carcinomas in Hong Kong Chinese. (6/15602)

Microsatellite instability (MI), the phenotypic manifestation of mismatch repair failure, is found in a proportion of gastric carcinomas. Little is known of the links between MI and Epstein-Barr virus (EBV) status and clinicopathological elements. Examination of genes mutated through the MI mechanism could also be expected to reveal important information on the carcinogenic pathway. Seventy-nine gastric carcinomas (61 EBV negative, 18 EBV positive) from local Hong Kong Chinese population, an intermediate-incidence area, were examined. Eight microsatellite loci, inclusive of the A10 tract of type II transforming growth factor beta receptor (TbetaR-II), were used to evaluate the MI status. MI in the BAX and insulin-like growth factor II receptor (IGF-IIR) genes were also examined. High-level MI (>40% unstable loci) was detected in ten cases (12.7%) and low-level MI (1-40% unstable loci) in three (3.8%). High-level MI was detected in two EBV-associated cases (11%) and the incidence was similar for the EBV-negative cases (13%). The high-level MIs were significantly associated with intestinal-type tumours (P = 0.03) and a more prominent lymphoid infiltrate (P = 0.04). Similar associations were noted in the EBV-positive carcinomas. The high-level MIs were more commonly located in the antrum, whereas the EBV-associated carcinomas were mostly located in body. Thirteen cardia cases were negative for both high-level MI and EBV. All patients aged below 55 were MI negative (P = 0.049). Of the high-level MIs, 80% had mutation in TbetaR-II, 40% in BAX and 0% in IGF-IIR. Of low-level MIs, 33% also had TbetaR-II mutation. These mutations were absent in the MI-negative cases. Of three lymphoepithelioma-like carcinomas, two cases were EBV positive and MI negative, one case was EBV negative but with high-level MI. In conclusion, high-level MIs were present regardless of the EBV status, and were found in a particular clinicopathological subset of gastric carcinoma patient. Inactivation of important growth regulatory genes observed in these carcinomas confirms the importance of MI in carcinogenesis.  (+info)

Clinical significance of circulating anti-p53 antibodies in European patients with hepatocellular carcinoma. (7/15602)

p53 alterations are considered to be predictive of poor prognosis in hepatocellular carcinoma (HCC) and may induce a humoral response. Anti-p53 serum antibodies were assessed by enzyme-linked immunosorbent assay (ELISA) using purified recombinant human p53 on 130 European HCC patients before treatment and during the clinical course of the disease. p53 immunohistochemistry was performed on tumours from the 52 patients who underwent surgery, and DNA sequencing analysis was initiated when circulating anti-p53 antibodies were detected. Nine (7%) HCC patients had anti-p53 serum antibodies before treatment. During a mean period of 30 months of follow-up, all the negative patients remained negative, even when recurrence was observed. Of the nine positive patients, eight were still positive 12-30 months after surgery. The presence of anti-p53 serum antibodies was correlated neither with mutation of the p53 gene nor the serum alpha-fetoprotein levels and clinicopathological characteristics of the tumours. However, a greater incidence of vascular invasion and accumulation of p53 protein were observed in the tumours of these patients (P<0.03 and P<0.01 respectively) as well as a better survival rate without recurrence (P = 0.05). In conclusion, as was recently shown in pancreatic cancer, anti-p53 serum antibodies may constitute a marker of relative 'good prognosis' in a subgroup of patients exhibiting one or several markers traditionally thought to be of bad prognosis.  (+info)

Mutations and allelic deletions of the MEN1 gene are associated with a subset of sporadic endocrine pancreatic and neuroendocrine tumors and not restricted to foregut neoplasms. (8/15602)

Endocrine pancreatic tumors (EPT) and neuroendocrine tumors (NET) occur sporadically and rarely in association with multiple endocrine neoplasia type 1 (MEN1). We analyzed the frequency of allelic deletions and mutations of the recently identified MEN1 gene in 53 sporadic tumors including 30 EPT and 23 NET (carcinoids) of different locations and types. Allelic deletion of the MEN1 locus was identified in 18/49 (36.7%) tumors (13/30, 43.3% in EPT and 5/19, 26.3% in NET) and mutations of the MEN1 gene were present in 8/52 (15.3%) tumors (4/30 (13.3%) EPT and 4/22 (18.1%) NET). The somatic mutations were clustered in the 5' region of the coding sequence and most frequently encompassed missense mutations. All tumors with mutations exhibited a loss of the other allele and a wild-type sequence of the MEN1 gene in nontumorous DNA. In one additional patient with a NET of the lung and no clinical signs or history of MEN1, a 5178-9G-->A splice donor site mutation in intron 4 was identified in both the tumor and blood DNA, indicating the presence of a thus far unknown MEN1 syndrome. In most tumor groups the frequency of allelic deletions at 11q13 was 2 to 3 times higher than the frequency of identified MEN1 gene mutations. Some tumor types, including rare forms of EPT and NET of the duodenum and small intestine, exhibited mutations more frequently than other types. Furthermore, somatic mutations were not restricted to foregut tumors but were also detectable in a midgut tumor (15.2% versus 16.6%). Our data indicate that somatic MEN1 gene mutations contribute to a subset of sporadic EPT and NET, including midgut tumors. Because the frequency of mutations varies significantly among the investigated tumor subgroups and allelic deletions are 2 to 3 times more frequently observed, factors other than MEN1 gene inactivation, including other tumor-suppressor genes on 11q13, may also be involved in the tumorigenesis of these neoplasms.  (+info)

In the medical field, an amino acid sequence refers to the linear order of amino acids in a protein molecule. Proteins are made up of chains of amino acids, and the specific sequence of these amino acids determines the protein's structure and function. The amino acid sequence is determined by the genetic code, which is a set of rules that specifies how the sequence of nucleotides in DNA is translated into the sequence of amino acids in a protein. Each amino acid is represented by a three-letter code, and the sequence of these codes is the amino acid sequence of the protein. The amino acid sequence is important because it determines the protein's three-dimensional structure, which in turn determines its function. Small changes in the amino acid sequence can have significant effects on the protein's structure and function, and this can lead to diseases or disorders. For example, mutations in the amino acid sequence of a protein involved in blood clotting can lead to bleeding disorders.

In the medical field, a base sequence refers to the specific order of nucleotides (adenine, thymine, cytosine, and guanine) that make up the genetic material (DNA or RNA) of an organism. The base sequence determines the genetic information encoded within the DNA molecule and ultimately determines the traits and characteristics of an individual. The base sequence can be analyzed using various techniques, such as DNA sequencing, to identify genetic variations or mutations that may be associated with certain diseases or conditions.

In the medical field, binding sites refer to specific locations on the surface of a protein molecule where a ligand (a molecule that binds to the protein) can attach. These binding sites are often formed by a specific arrangement of amino acids within the protein, and they are critical for the protein's function. Binding sites can be found on a wide range of proteins, including enzymes, receptors, and transporters. When a ligand binds to a protein's binding site, it can cause a conformational change in the protein, which can alter its activity or function. For example, a hormone may bind to a receptor protein, triggering a signaling cascade that leads to a specific cellular response. Understanding the structure and function of binding sites is important in many areas of medicine, including drug discovery and development, as well as the study of diseases caused by mutations in proteins that affect their binding sites. By targeting specific binding sites on proteins, researchers can develop drugs that modulate protein activity and potentially treat a wide range of diseases.

Amino acid substitution is a genetic mutation that occurs when one amino acid is replaced by another in a protein. This can happen due to a change in the DNA sequence that codes for the protein. Amino acid substitutions can have a variety of effects on the function of the protein, depending on the specific amino acid that is replaced and the location of the substitution within the protein. In some cases, amino acid substitutions can lead to the production of a non-functional protein, which can result in a genetic disorder. In other cases, amino acid substitutions may have little or no effect on the function of the protein.

In the medical field, a conserved sequence refers to a segment of DNA or RNA that is highly similar or identical across different species or organisms. These sequences are often important for the function of the molecule, and their conservation suggests that they have been evolutionarily conserved for a long time. Conserved sequences can be found in a variety of contexts, including in coding regions of genes, in regulatory regions that control gene expression, and in non-coding regions that have important functional roles. They can also be used as markers for identifying related species or for studying the evolution of a particular gene or pathway. Conserved sequences are often studied using bioinformatics tools and techniques, such as sequence alignment and phylogenetic analysis. By identifying and analyzing conserved sequences, researchers can gain insights into the function and evolution of genes and other biological molecules.

In the medical field, a cell line refers to a group of cells that have been derived from a single parent cell and have the ability to divide and grow indefinitely in culture. These cells are typically grown in a laboratory setting and are used for research purposes, such as studying the effects of drugs or investigating the underlying mechanisms of diseases. Cell lines are often derived from cancerous cells, as these cells tend to divide and grow more rapidly than normal cells. However, they can also be derived from normal cells, such as fibroblasts or epithelial cells. Cell lines are characterized by their unique genetic makeup, which can be used to identify them and compare them to other cell lines. Because cell lines can be grown in large quantities and are relatively easy to maintain, they are a valuable tool in medical research. They allow researchers to study the effects of drugs and other treatments on specific cell types, and to investigate the underlying mechanisms of diseases at the cellular level.

DNA-binding proteins are a class of proteins that interact with DNA molecules to regulate gene expression. These proteins recognize specific DNA sequences and bind to them, thereby affecting the transcription of genes into messenger RNA (mRNA) and ultimately the production of proteins. DNA-binding proteins play a crucial role in many biological processes, including cell division, differentiation, and development. They can act as activators or repressors of gene expression, depending on the specific DNA sequence they bind to and the cellular context in which they are expressed. Examples of DNA-binding proteins include transcription factors, histones, and non-histone chromosomal proteins. Transcription factors are proteins that bind to specific DNA sequences and regulate the transcription of genes by recruiting RNA polymerase and other factors to the promoter region of a gene. Histones are proteins that package DNA into chromatin, and non-histone chromosomal proteins help to organize and regulate chromatin structure. DNA-binding proteins are important targets for drug discovery and development, as they play a central role in many diseases, including cancer, genetic disorders, and infectious diseases.

In the medical field, amino acid motifs refer to specific sequences of amino acids that are commonly found in proteins. These motifs can play important roles in protein function, such as binding to other molecules, catalyzing chemical reactions, or stabilizing the protein structure. Amino acid motifs can also be used as diagnostic or prognostic markers for certain diseases, as changes in the amino acid sequence of a protein can be associated with the development or progression of a particular condition. Additionally, amino acid motifs can be targeted by drugs or other therapeutic agents to modulate protein function and treat disease.

Bacterial proteins are proteins that are synthesized by bacteria. They are essential for the survival and function of bacteria, and play a variety of roles in bacterial metabolism, growth, and pathogenicity. Bacterial proteins can be classified into several categories based on their function, including structural proteins, metabolic enzymes, regulatory proteins, and toxins. Structural proteins provide support and shape to the bacterial cell, while metabolic enzymes are involved in the breakdown of nutrients and the synthesis of new molecules. Regulatory proteins control the expression of other genes, and toxins can cause damage to host cells and tissues. Bacterial proteins are of interest in the medical field because they can be used as targets for the development of antibiotics and other antimicrobial agents. They can also be used as diagnostic markers for bacterial infections, and as vaccines to prevent bacterial diseases. Additionally, some bacterial proteins have been shown to have therapeutic potential, such as enzymes that can break down harmful substances in the body or proteins that can stimulate the immune system.

Transcription factors are proteins that regulate gene expression by binding to specific DNA sequences and controlling the transcription of genetic information from DNA to RNA. They play a crucial role in the development and function of cells and tissues in the body. In the medical field, transcription factors are often studied as potential targets for the treatment of diseases such as cancer, where their activity is often dysregulated. For example, some transcription factors are overexpressed in certain types of cancer cells, and inhibiting their activity may help to slow or stop the growth of these cells. Transcription factors are also important in the development of stem cells, which have the ability to differentiate into a wide variety of cell types. By understanding how transcription factors regulate gene expression in stem cells, researchers may be able to develop new therapies for diseases such as diabetes and heart disease. Overall, transcription factors are a critical component of gene regulation and have important implications for the development and treatment of many diseases.

Recombinant proteins are proteins that are produced by genetically engineering bacteria, yeast, or other organisms to express a specific gene. These proteins are typically used in medical research and drug development because they can be produced in large quantities and are often more pure and consistent than proteins that are extracted from natural sources. Recombinant proteins can be used for a variety of purposes in medicine, including as diagnostic tools, therapeutic agents, and research tools. For example, recombinant versions of human proteins such as insulin, growth hormones, and clotting factors are used to treat a variety of medical conditions. Recombinant proteins can also be used to study the function of specific genes and proteins, which can help researchers understand the underlying causes of diseases and develop new treatments.

Recombinant fusion proteins are proteins that are produced by combining two or more genes in a single molecule. These proteins are typically created using genetic engineering techniques, such as recombinant DNA technology, to insert one or more genes into a host organism, such as bacteria or yeast, which then produces the fusion protein. Fusion proteins are often used in medical research and drug development because they can have unique properties that are not present in the individual proteins that make up the fusion. For example, a fusion protein might be designed to have increased stability, improved solubility, or enhanced targeting to specific cells or tissues. Recombinant fusion proteins have a wide range of applications in medicine, including as therapeutic agents, diagnostic tools, and research reagents. Some examples of recombinant fusion proteins used in medicine include antibodies, growth factors, and cytokines.

Cloning, molecular, in the medical field refers to the process of creating identical copies of a specific DNA sequence or gene. This is achieved through a technique called polymerase chain reaction (PCR), which amplifies a specific DNA sequence to produce multiple copies of it. Molecular cloning is commonly used in medical research to study the function of specific genes, to create genetically modified organisms for therapeutic purposes, and to develop new drugs and treatments. It is also used in forensic science to identify individuals based on their DNA. In the context of human cloning, molecular cloning is used to create identical copies of a specific gene or DNA sequence from one individual and insert it into the genome of another individual. This technique has been used to create transgenic animals, but human cloning is currently illegal in many countries due to ethical concerns.

DNA primers are short, single-stranded DNA molecules that are used in a variety of molecular biology techniques, including polymerase chain reaction (PCR) and DNA sequencing. They are designed to bind to specific regions of a DNA molecule, and are used to initiate the synthesis of new DNA strands. In PCR, DNA primers are used to amplify specific regions of DNA by providing a starting point for the polymerase enzyme to begin synthesizing new DNA strands. The primers are complementary to the target DNA sequence, and are added to the reaction mixture along with the DNA template, nucleotides, and polymerase enzyme. The polymerase enzyme uses the primers as a template to synthesize new DNA strands, which are then extended by the addition of more nucleotides. This process is repeated multiple times, resulting in the amplification of the target DNA sequence. DNA primers are also used in DNA sequencing to identify the order of nucleotides in a DNA molecule. In this application, the primers are designed to bind to specific regions of the DNA molecule, and are used to initiate the synthesis of short DNA fragments. The fragments are then sequenced using a variety of techniques, such as Sanger sequencing or next-generation sequencing. Overall, DNA primers are an important tool in molecular biology, and are used in a wide range of applications to study and manipulate DNA.

Crystallography, X-ray is a technique used in the medical field to study the structure of biological molecules, such as proteins and nucleic acids, by analyzing the diffraction patterns produced by X-rays passing through the sample. This technique is used to determine the three-dimensional structure of these molecules, which is important for understanding their function and for developing new drugs and therapies. X-ray crystallography is a powerful tool that has been instrumental in advancing our understanding of many important biological processes and diseases.

Alanine is an amino acid that is a building block of proteins. It is an essential amino acid, meaning that it cannot be synthesized by the body and must be obtained through the diet. Alanine plays a number of important roles in the body, including: 1. Energy production: Alanine can be converted into glucose, which is a source of energy for the body. 2. Muscle function: Alanine is involved in the metabolism of muscle tissue and can help to prevent muscle damage. 3. Liver function: Alanine is an important component of the liver's detoxification process and can help to protect the liver from damage. 4. Acid-base balance: Alanine helps to regulate the body's acid-base balance by buffering excess acid in the blood. In the medical field, alanine is often used as a biomarker to assess liver function. Elevated levels of alanine in the blood can indicate liver damage or disease. Alanine is also used as a dietary supplement to support muscle growth and recovery.

In the medical field, a catalytic domain is a region of a protein that is responsible for catalyzing a specific chemical reaction. Catalytic domains are often found in enzymes, which are proteins that speed up chemical reactions in the body. These domains are typically composed of a specific sequence of amino acids that form a three-dimensional structure that allows them to bind to specific substrates and catalyze their breakdown or synthesis. Catalytic domains are important for many biological processes, including metabolism, signal transduction, and gene expression. They are also the target of many drugs, which can be designed to interfere with the activity of specific catalytic domains in order to treat diseases.

Viral proteins are proteins that are synthesized by viruses during their replication cycle within a host cell. These proteins play a crucial role in the viral life cycle, including attachment to host cells, entry into the cell, replication of the viral genome, assembly of new viral particles, and release of the virus from the host cell. Viral proteins can be classified into several categories based on their function, including structural proteins, non-structural proteins, and regulatory proteins. Structural proteins are the building blocks of the viral particle, such as capsid proteins that form the viral coat. Non-structural proteins are proteins that are not part of the viral particle but are essential for viral replication, such as proteases that cleave viral polyproteins into individual proteins. Regulatory proteins are proteins that control the expression of viral genes or the activity of viral enzymes. Viral proteins are important targets for antiviral drugs and vaccines, as they are essential for viral replication and survival. Understanding the structure and function of viral proteins is crucial for the development of effective antiviral therapies and vaccines.

Escherichia coli (E. coli) is a type of bacteria that is commonly found in the human gut. E. coli proteins are proteins that are produced by E. coli bacteria. These proteins can have a variety of functions, including helping the bacteria to survive and thrive in the gut, as well as potentially causing illness in humans. In the medical field, E. coli proteins are often studied as potential targets for the development of new treatments for bacterial infections. For example, some E. coli proteins are involved in the bacteria's ability to produce toxins that can cause illness in humans, and researchers are working to develop drugs that can block the activity of these proteins in order to prevent or treat E. coli infections. E. coli proteins are also used in research to study the biology of the bacteria and to understand how it interacts with the human body. For example, researchers may use E. coli proteins as markers to track the growth and spread of the bacteria in the gut, or they may use them to study the mechanisms by which the bacteria causes illness. Overall, E. coli proteins are an important area of study in the medical field, as they can provide valuable insights into the biology of this important bacterium and may have potential applications in the treatment of bacterial infections.

DNA, or deoxyribonucleic acid, is a molecule that carries genetic information in living organisms. It is composed of four types of nitrogen-containing molecules called nucleotides, which are arranged in a specific sequence to form the genetic code. In the medical field, DNA is often studied as a tool for understanding and diagnosing genetic disorders. Genetic disorders are caused by changes in the DNA sequence that can affect the function of genes, leading to a variety of health problems. By analyzing DNA, doctors and researchers can identify specific genetic mutations that may be responsible for a particular disorder, and develop targeted treatments or therapies to address the underlying cause of the condition. DNA is also used in forensic science to identify individuals based on their unique genetic fingerprint. This is because each person's DNA sequence is unique, and can be used to distinguish one individual from another. DNA analysis is also used in criminal investigations to help solve crimes by linking DNA evidence to suspects or victims.

In the medical field, a consensus sequence refers to a DNA or protein sequence that is widely accepted as the most accurate or representative of a particular group or species. This sequence is typically determined through a process of consensus building, in which multiple sequences are compared and the most frequently occurring nucleotides or amino acids are chosen to represent the consensus. Consensus sequences are often used in medical research and diagnostics as a reference for comparing and analyzing other sequences. For example, the human genome project used consensus sequences to identify and map the genes and other functional elements of the human genome. Consensus sequences are also used in the design of genetic markers and primers for PCR (polymerase chain reaction) and other molecular techniques. Consensus sequences can be derived from a variety of sources, including genomic databases, experimental data, and computational predictions. They are typically represented as a single sequence, but may also be represented as a multiple sequence alignment, which shows the similarities and differences between multiple sequences.

In the medical field, "COS Cells" typically refers to "cumulus-oocyte complexes." These are clusters of cells that are found in the ovaries of women and are involved in the process of ovulation and fertilization. The cumulus cells are a type of supporting cells that surround the oocyte (egg cell) and help to nourish and protect it. The oocyte is the female reproductive cell that is produced in the ovaries and is capable of being fertilized by a sperm cell to form a zygote, which can develop into a fetus. During the menstrual cycle, the ovaries produce several follicles, each containing an oocyte and surrounding cumulus cells. One follicle will mature and release its oocyte during ovulation, which is triggered by a surge in luteinizing hormone (LH). The released oocyte then travels down the fallopian tube, where it may be fertilized by a sperm cell. COS cells are often used in assisted reproductive technologies (ART), such as in vitro fertilization (IVF), to help facilitate the growth and development of oocytes for use in fertility treatments.

In the medical field, catalysis refers to the acceleration of a chemical reaction by a catalyst. A catalyst is a substance that increases the rate of a chemical reaction without being consumed or altered in the process. Catalysts are commonly used in medical research and drug development to speed up the synthesis of compounds or to optimize the efficiency of chemical reactions. For example, enzymes are biological catalysts that play a crucial role in many metabolic processes in the body. In medical research, enzymes are often used as catalysts to speed up the synthesis of drugs or to optimize the efficiency of chemical reactions involved in drug metabolism. Catalysis is also used in medical imaging techniques, such as magnetic resonance imaging (MRI), where contrast agents are used to enhance the visibility of certain tissues or organs. These contrast agents are often synthesized using catalytic reactions to increase their efficiency and effectiveness. Overall, catalysis plays a critical role in many areas of medical research and drug development, helping to accelerate the synthesis of compounds and optimize the efficiency of chemical reactions.

Membrane proteins are proteins that are embedded within the lipid bilayer of a cell membrane. They play a crucial role in regulating the movement of substances across the membrane, as well as in cell signaling and communication. There are several types of membrane proteins, including integral membrane proteins, which span the entire membrane, and peripheral membrane proteins, which are only in contact with one or both sides of the membrane. Membrane proteins can be classified based on their function, such as transporters, receptors, channels, and enzymes. They are important for many physiological processes, including nutrient uptake, waste elimination, and cell growth and division.

Repressor proteins are a class of proteins that regulate gene expression by binding to specific DNA sequences and preventing the transcription of the associated gene. They are often involved in controlling the expression of genes that are involved in cellular processes such as metabolism, growth, and differentiation. Repressor proteins can be classified into two main types: transcriptional repressors and post-transcriptional repressors. Transcriptional repressors bind to specific DNA sequences near the promoter region of a gene, which prevents the binding of RNA polymerase and other transcription factors, thereby inhibiting the transcription of the gene. Post-transcriptional repressors, on the other hand, bind to the mRNA of a gene, which prevents its translation into protein or causes its degradation, thereby reducing the amount of protein produced. Repressor proteins play important roles in many biological processes, including development, differentiation, and cellular response to environmental stimuli. They are also involved in the regulation of many diseases, including cancer, neurological disorders, and metabolic disorders.

In the medical field, a mutant protein refers to a protein that has undergone a genetic mutation, resulting in a change in its structure or function. Mutations can occur in the DNA sequence that codes for a protein, leading to the production of a protein with a different amino acid sequence than the normal, or wild-type, protein. Mutant proteins can be associated with a variety of medical conditions, including genetic disorders, cancer, and neurodegenerative diseases. For example, mutations in the BRCA1 and BRCA2 genes can increase the risk of breast and ovarian cancer, while mutations in the huntingtin gene can cause Huntington's disease. In some cases, mutant proteins can be targeted for therapeutic intervention. For example, drugs that inhibit the activity of mutant proteins or promote the degradation of mutant proteins may be used to treat certain types of cancer or other diseases.

Saccharomyces cerevisiae proteins are proteins that are produced by the yeast species Saccharomyces cerevisiae. This yeast is commonly used in the production of bread, beer, and wine, as well as in scientific research. In the medical field, S. cerevisiae proteins have been studied for their potential use in the treatment of various diseases, including cancer, diabetes, and neurodegenerative disorders. Some S. cerevisiae proteins have also been shown to have anti-inflammatory and immunomodulatory effects, making them of interest for the development of new therapies.

Nuclear proteins are proteins that are found within the nucleus of a cell. The nucleus is the control center of the cell, where genetic material is stored and regulated. Nuclear proteins play a crucial role in many cellular processes, including DNA replication, transcription, and gene regulation. There are many different types of nuclear proteins, each with its own specific function. Some nuclear proteins are involved in the structure and organization of the nucleus itself, while others are involved in the regulation of gene expression. Nuclear proteins can also interact with other proteins, DNA, and RNA molecules to carry out their functions. In the medical field, nuclear proteins are often studied in the context of diseases such as cancer, where changes in the expression or function of nuclear proteins can contribute to the development and progression of the disease. Additionally, nuclear proteins are important targets for drug development, as they can be targeted to treat a variety of diseases.

In the medical field, carrier proteins are proteins that transport molecules across cell membranes or within cells. These proteins bind to specific molecules, such as hormones, nutrients, or waste products, and facilitate their movement across the membrane or within the cell. Carrier proteins play a crucial role in maintaining the proper balance of molecules within cells and between cells. They are involved in a wide range of physiological processes, including nutrient absorption, hormone regulation, and waste elimination. There are several types of carrier proteins, including facilitated diffusion carriers, active transport carriers, and ion channels. Each type of carrier protein has a specific function and mechanism of action. Understanding the role of carrier proteins in the body is important for diagnosing and treating various medical conditions, such as genetic disorders, metabolic disorders, and neurological disorders.

RNA, Viral refers to the genetic material of viruses that are composed of RNA instead of DNA. Viral RNA is typically single-stranded and can be either positive-sense or negative-sense. Positive-sense RNA viruses can be directly translated into proteins by the host cell's ribosomes, while negative-sense RNA viruses require a complementary positive-sense RNA intermediate before protein synthesis can occur. Viral RNA is often encapsidated within a viral capsid and can be further protected by an envelope made of lipids and proteins derived from the host cell. RNA viruses include a wide range of pathogens that can cause diseases in humans and other organisms, such as influenza, hepatitis C, and SARS-CoV-2 (the virus responsible for COVID-19).

In the medical field, "trans-activators" refer to proteins or molecules that activate the transcription of a gene, which is the process by which the information in a gene is used to produce a functional product, such as a protein. Trans-activators can bind to specific DNA sequences near a gene and recruit other proteins, such as RNA polymerase, to initiate transcription. They can also modify the chromatin structure around a gene to make it more accessible to transcription machinery. Trans-activators play important roles in regulating gene expression and are involved in many biological processes, including development, differentiation, and disease.

Oligodeoxyribonucleotides (ODNs) are short chains of DNA or RNA that are synthesized in the laboratory. They are typically used as tools in molecular biology research, as well as in therapeutic applications such as gene therapy. ODNs can be designed to bind to specific DNA or RNA sequences, and can be used to modulate gene expression or to introduce genetic changes into cells. They can also be used as primers in PCR (polymerase chain reaction) to amplify specific DNA sequences. In the medical field, ODNs are being studied for their potential use in treating a variety of diseases, including cancer, viral infections, and genetic disorders. For example, ODNs can be used to silence specific genes that are involved in disease progression, or to stimulate the immune system to attack cancer cells.

Cercopithecus aethiops, commonly known as the vervet monkey, is a species of Old World monkey that is native to Africa. In the medical field, Cercopithecus aethiops is often used in research studies as a model organism to study a variety of diseases and conditions, including infectious diseases, neurological disorders, and cancer. This is because vervet monkeys share many genetic and physiological similarities with humans, making them useful for studying human health and disease.

Serine is an amino acid that is a building block of proteins. It is a non-essential amino acid, meaning that it can be synthesized by the body from other compounds. In the medical field, serine is known to play a role in various physiological processes, including the production of neurotransmitters, the regulation of blood sugar levels, and the maintenance of healthy skin and hair. It is also used as a dietary supplement to support these functions and to promote overall health. In some cases, serine may be prescribed by a healthcare provider to treat certain medical conditions, such as liver disease or depression.

Cysteine is an amino acid that is essential for the proper functioning of the human body. It is a sulfur-containing amino acid that is involved in the formation of disulfide bonds, which are important for the structure and function of many proteins. Cysteine is also involved in the detoxification of harmful substances in the body, and it plays a role in the production of glutathione, a powerful antioxidant. In the medical field, cysteine is used to treat a variety of conditions, including respiratory infections, kidney stones, and cataracts. It is also used as a dietary supplement to support overall health and wellness.

Fungal proteins are proteins that are produced by fungi. They can be found in various forms, including extracellular proteins, secreted proteins, and intracellular proteins. Fungal proteins have a wide range of functions, including roles in metabolism, cell wall synthesis, and virulence. In the medical field, fungal proteins are of interest because some of them have potential therapeutic applications, such as in the treatment of fungal infections or as vaccines against fungal diseases. Additionally, some fungal proteins have been shown to have anti-cancer properties, making them potential targets for the development of new cancer treatments.

In the medical field, RNA, Messenger (mRNA) refers to a type of RNA molecule that carries genetic information from DNA in the nucleus of a cell to the ribosomes, where proteins are synthesized. During the process of transcription, the DNA sequence of a gene is copied into a complementary RNA sequence called messenger RNA (mRNA). This mRNA molecule then leaves the nucleus and travels to the cytoplasm of the cell, where it binds to ribosomes and serves as a template for the synthesis of a specific protein. The sequence of nucleotides in the mRNA molecule determines the sequence of amino acids in the protein that is synthesized. Therefore, changes in the sequence of nucleotides in the mRNA molecule can result in changes in the amino acid sequence of the protein, which can affect the function of the protein and potentially lead to disease. mRNA molecules are often used in medical research and therapy as a way to introduce new genetic information into cells. For example, mRNA vaccines work by introducing a small piece of mRNA that encodes for a specific protein, which triggers an immune response in the body.

DNA, Bacterial refers to the genetic material of bacteria, which is a type of single-celled microorganism that can be found in various environments, including soil, water, and the human body. Bacterial DNA is typically circular in shape and contains genes that encode for the proteins necessary for the bacteria to survive and reproduce. In the medical field, bacterial DNA is often studied as a means of identifying and diagnosing bacterial infections. Bacterial DNA can be extracted from samples such as blood, urine, or sputum and analyzed using techniques such as polymerase chain reaction (PCR) or DNA sequencing. This information can be used to identify the specific type of bacteria causing an infection and to determine the most effective treatment. Bacterial DNA can also be used in research to study the evolution and diversity of bacteria, as well as their interactions with other organisms and the environment. Additionally, bacterial DNA can be modified or manipulated to create genetically engineered bacteria with specific properties, such as the ability to produce certain drugs or to degrade pollutants.

In the medical field, "DNA, Viral" refers to the genetic material of viruses, which is composed of deoxyribonucleic acid (DNA). Viruses are infectious agents that can only replicate inside living cells of organisms, including humans. The genetic material of viruses is different from that of cells, as viruses do not have a cellular structure and cannot carry out metabolic processes on their own. Instead, they rely on the host cell's machinery to replicate and produce new viral particles. Understanding the genetic material of viruses is important for developing treatments and vaccines against viral infections. By studying the DNA or RNA (ribonucleic acid) of viruses, researchers can identify potential targets for antiviral drugs and design vaccines that stimulate the immune system to recognize and fight off viral infections.

Chenopodium quinoa, commonly known as quinoa, is a plant species that belongs to the Amaranthaceae family. It is native to the Andean region of South America and has been cultivated for thousands of years by indigenous peoples for its edible seeds. In the medical field, quinoa is not typically used as a medication or treatment for any specific condition. However, it is considered a nutritious food source and is often recommended as part of a healthy diet. Quinoa is a good source of protein, fiber, vitamins, and minerals, and has been shown to have potential health benefits such as improving blood sugar control, reducing inflammation, and supporting heart health. Quinoa is also sometimes used in traditional medicine in some parts of the world, particularly in South America, where it is believed to have a variety of medicinal properties. For example, it is sometimes used to treat digestive issues, as a diuretic, and to support the immune system. However, the scientific evidence for these uses is limited, and more research is needed to confirm their effectiveness.

In the medical field, cytoplasm refers to the gel-like substance that fills the cell membrane of a living cell. It is composed of various organelles, such as mitochondria, ribosomes, and the endoplasmic reticulum, as well as various dissolved molecules, including proteins, lipids, and carbohydrates. The cytoplasm plays a crucial role in many cellular processes, including metabolism, protein synthesis, and cell division. It also serves as a site for various cellular activities, such as the movement of organelles within the cell and the transport of molecules across the cell membrane. In addition, the cytoplasm is involved in maintaining the structural integrity of the cell and protecting it from external stressors, such as toxins and pathogens. Overall, the cytoplasm is a vital component of the cell and plays a critical role in its function and survival.

In the medical field, alleles refer to the different forms of a gene that exist at a particular genetic locus (location) on a chromosome. Each gene has two alleles, one inherited from each parent. These alleles can be either dominant or recessive, and their combination determines the expression of the trait associated with that gene. For example, the gene for blood type has three alleles: A, B, and O. A person can inherit one or two copies of each allele, resulting in different blood types (A, B, AB, or O). The dominant allele is the one that is expressed when present in one copy, while the recessive allele is only expressed when present in two copies. Understanding the different alleles of a gene is important in medical genetics because it can help diagnose genetic disorders, predict disease risk, and guide treatment decisions. For example, mutations in certain alleles can cause genetic diseases such as sickle cell anemia or cystic fibrosis. By identifying the specific alleles involved in a genetic disorder, doctors can develop targeted therapies or genetic counseling to help affected individuals and their families.

Protein sorting signals are specific amino acid sequences within a protein that serve as instructions for directing the protein to its proper location within a cell or to a specific organelle within the cell. These signals are recognized by receptors or chaperones within the cell, which then guide the protein to its destination. Protein sorting signals are critical for proper protein function and localization within the cell, and defects in these signals can lead to a variety of diseases and disorders. Examples of protein sorting signals include the signal peptide, which directs proteins to the endoplasmic reticulum for processing and secretion, and the nuclear localization signal, which directs proteins to the nucleus for gene regulation.

Threonine is an essential amino acid that plays a crucial role in various biological processes in the human body. It is a polar amino acid with a hydroxyl group (-OH) attached to the alpha carbon atom, which makes it hydrophilic and capable of forming hydrogen bonds. In the medical field, threonine is important for several reasons. Firstly, it is a building block of proteins, which are essential for the structure and function of cells and tissues in the body. Secondly, threonine is involved in the metabolism of carbohydrates and lipids, which are important sources of energy for the body. Thirdly, threonine is a precursor for the synthesis of several important molecules, including carnitine, which plays a role in the metabolism of fatty acids. Threonine deficiency can lead to a range of health problems, including muscle wasting, impaired growth and development, and weakened immune function. It is therefore important to ensure that the body receives adequate amounts of threonine through a balanced diet or supplements.

Lysine is an essential amino acid that is required for the growth and maintenance of tissues in the human body. It is one of the nine essential amino acids that cannot be synthesized by the body and must be obtained through the diet. Lysine plays a crucial role in the production of proteins, including enzymes, hormones, and antibodies. It is also involved in the absorption of calcium and the production of niacin, a B vitamin that is important for energy metabolism and the prevention of pellagra. In the medical field, lysine is used to treat and prevent various conditions, including: 1. Herpes simplex virus (HSV): Lysine supplements have been shown to reduce the frequency and severity of outbreaks of HSV-1 and HSV-2, which cause cold sores and genital herpes, respectively. 2. Cold sores: Lysine supplements can help reduce the frequency and severity of cold sore outbreaks by inhibiting the replication of the herpes simplex virus. 3. Depression: Lysine has been shown to increase levels of serotonin, a neurotransmitter that regulates mood, in the brain. 4. Hair loss: Lysine is important for the production of hair, and deficiency in lysine has been linked to hair loss. 5. Wound healing: Lysine is involved in the production of collagen, a protein that is important for wound healing. Overall, lysine is an important nutrient that plays a crucial role in many aspects of human health and is used in the treatment and prevention of various medical conditions.

The cell nucleus is a membrane-bound organelle found in eukaryotic cells that contains the cell's genetic material, or DNA. It is typically located in the center of the cell and is surrounded by a double membrane called the nuclear envelope. The nucleus is responsible for regulating gene expression and controlling the cell's activities. It contains a dense, irregularly shaped mass of chromatin, which is made up of DNA and associated proteins. The nucleus also contains a small body called the nucleolus, which is responsible for producing ribosomes, the cellular structures that synthesize proteins.

Adenosine triphosphatases (ATPases) are a group of enzymes that hydrolyze adenosine triphosphate (ATP) to adenosine diphosphate (ADP) and inorganic phosphate (Pi). These enzymes play a crucial role in many cellular processes, including energy production, muscle contraction, and ion transport. In the medical field, ATPases are often studied in relation to various diseases and conditions. For example, mutations in certain ATPase genes have been linked to inherited disorders such as myopathy and neurodegenerative diseases. Additionally, ATPases are often targeted by drugs used to treat conditions such as heart failure, cancer, and autoimmune diseases. Overall, ATPases are essential enzymes that play a critical role in many cellular processes, and their dysfunction can have significant implications for human health.

Proteins are complex biomolecules made up of amino acids that play a crucial role in many biological processes in the human body. In the medical field, proteins are studied extensively as they are involved in a wide range of functions, including: 1. Enzymes: Proteins that catalyze chemical reactions in the body, such as digestion, metabolism, and energy production. 2. Hormones: Proteins that regulate various bodily functions, such as growth, development, and reproduction. 3. Antibodies: Proteins that help the immune system recognize and neutralize foreign substances, such as viruses and bacteria. 4. Transport proteins: Proteins that facilitate the movement of molecules across cell membranes, such as oxygen and nutrients. 5. Structural proteins: Proteins that provide support and shape to cells and tissues, such as collagen and elastin. Protein abnormalities can lead to various medical conditions, such as genetic disorders, autoimmune diseases, and cancer. Therefore, understanding the structure and function of proteins is essential for developing effective treatments and therapies for these conditions.

Chloramphenicol O-Acetyltransferase (COT) is an enzyme that is responsible for the metabolism of the antibiotic chloramphenicol. It is found in a variety of organisms, including bacteria, fungi, and plants. In the medical field, COT is often studied as a potential target for the development of new antibiotics, as it plays a key role in the resistance of certain bacteria to chloramphenicol. Additionally, COT has been shown to have a number of other functions, including the detoxification of harmful compounds and the regulation of gene expression.

In the medical field, "DNA, Complementary" refers to the property of DNA molecules to pair up with each other in a specific way. Each strand of DNA has a unique sequence of nucleotides (adenine, thymine, guanine, and cytosine), and the nucleotides on one strand can only pair up with specific nucleotides on the other strand in a complementary manner. For example, adenine (A) always pairs up with thymine (T), and guanine (G) always pairs up with cytosine (C). This complementary pairing is essential for DNA replication and transcription, as it ensures that the genetic information encoded in one strand of DNA can be accurately copied onto a new strand. The complementary nature of DNA also plays a crucial role in genetic engineering and biotechnology, as scientists can use complementary DNA strands to create specific genetic sequences or modify existing ones.

Tyrosine is an amino acid that is essential for the production of certain hormones, neurotransmitters, and other important molecules in the body. It is a non-essential amino acid, which means that it can be synthesized by the body from other amino acids or from dietary sources. In the medical field, tyrosine is often used as a dietary supplement to support the production of certain hormones and neurotransmitters, particularly dopamine and norepinephrine. These hormones play important roles in regulating mood, motivation, and other aspects of brain function. Tyrosine is also used in the treatment of certain medical conditions, such as phenylketonuria (PKU), a genetic disorder that affects the metabolism of phenylalanine, another amino acid. In PKU, tyrosine supplementation can help to prevent the buildup of toxic levels of phenylalanine in the body. In addition, tyrosine has been studied for its potential benefits in the treatment of other conditions, such as depression, anxiety, and fatigue. However, more research is needed to confirm these potential benefits and to determine the optimal dosage and duration of tyrosine supplementation.

Proto-oncogenes are normal genes that are involved in regulating cell growth and division. When these genes are mutated or overexpressed, they can become oncogenes, which can lead to the development of cancer. Proto-oncogenes are also known as proto-oncogene proteins.

Proline is an amino acid that is commonly found in proteins. It is a non-essential amino acid, meaning that it can be synthesized by the body from other amino acids. In the medical field, proline is often used as a diagnostic tool to measure the levels of certain enzymes in the body, such as alanine transaminase (ALT) and aspartate transaminase (AST). These enzymes are released into the bloodstream when the liver is damaged, so elevated levels of proline can indicate liver disease. Proline is also used in the treatment of certain medical conditions, such as Peyronie's disease, which is a condition that causes curvature of the penis. Proline has been shown to help improve the flexibility of the penis and reduce the curvature associated with Peyronie's disease.

Cricetinae is a subfamily of rodents that includes hamsters, voles, and lemmings. These animals are typically small to medium-sized and have a broad, flat head and a short, thick body. They are found in a variety of habitats around the world, including grasslands, forests, and deserts. In the medical field, Cricetinae are often used as laboratory animals for research purposes, as they are easy to care for and breed, and have a relatively short lifespan. They are also used in studies of genetics, physiology, and behavior.

Aspartic acid is an amino acid that is naturally occurring in the human body. It is a non-essential amino acid, meaning that it can be synthesized by the body from other compounds and does not need to be obtained through the diet. Aspartic acid is found in high concentrations in the brain and spinal cord, and it plays a role in various physiological processes, including the production of neurotransmitters and the regulation of acid-base balance in the body. In the medical field, aspartic acid is sometimes used as a diagnostic tool to measure the function of the liver and kidneys, as well as to monitor the progression of certain diseases, such as cancer and HIV. It is also used as a dietary supplement in some cases.

RNA, or ribonucleic acid, is a type of nucleic acid that is involved in the process of protein synthesis in cells. It is composed of a chain of nucleotides, which are made up of a sugar molecule, a phosphate group, and a nitrogenous base. There are three types of RNA: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). In the medical field, RNA is often studied as a potential target for the development of new drugs and therapies. For example, some researchers are exploring the use of RNA interference (RNAi) to silence specific genes and treat diseases such as cancer and viral infections. Additionally, RNA is being studied as a potential biomarker for various diseases, as changes in the levels or structure of certain RNA molecules can indicate the presence of a particular condition.

The Sp1 transcription factor is a protein that plays a crucial role in regulating gene expression in the medical field. It is a member of the Sp family of transcription factors, which are involved in the regulation of a wide range of genes, including those involved in cell growth, differentiation, and apoptosis. Sp1 is a zinc finger protein that binds to specific DNA sequences called GC-rich boxes, which are found in the promoter regions of many genes. When Sp1 binds to these sequences, it recruits other proteins and helps to activate the transcription of the gene. This process is essential for the proper functioning of many biological processes, including cell proliferation, differentiation, and apoptosis. In the medical field, Sp1 is often studied in the context of cancer, as it has been implicated in the regulation of genes involved in cell proliferation and survival. Dysregulation of Sp1 activity has been linked to the development and progression of many types of cancer, including breast cancer, prostate cancer, and lung cancer. As such, understanding the role of Sp1 in gene regulation is an important area of research in cancer biology.

Circular Dichroism (CD) is a spectroscopic technique used to study the three-dimensional structure of biomolecules such as proteins, nucleic acids, and lipids. In the medical field, CD is used to study the structure and function of biomolecules involved in various diseases, such as cancer, neurodegenerative disorders, and infectious diseases. CD measures the difference in the absorption of left- and right-handed circularly polarized light by a sample. This difference is related to the molecular structure of the sample, particularly the secondary and tertiary structure of proteins and nucleic acids. By analyzing the CD spectrum of a biomolecule, researchers can gain insights into its structure, stability, and dynamics, which can help to understand its biological function and potential therapeutic targets. CD is a non-destructive technique that can be used in solution or in the solid state, and it can be applied to a wide range of biomolecules, including small molecules, peptides, and large proteins. In the medical field, CD is used in drug discovery and development, as well as in the study of protein-protein interactions, enzyme kinetics, and the mechanism of action of therapeutic agents.

In the medical field, a codon is a sequence of three nucleotides (adenine, cytosine, guanine, thymine, or uracil) that codes for a specific amino acid in a protein. There are 64 possible codons, and each one corresponds to one of the 20 amino acids used to build proteins. The sequence of codons in a gene determines the sequence of amino acids in the resulting protein, which ultimately determines the protein's structure and function. Mutations in a gene can change the codon sequence, which can lead to changes in the amino acid sequence and potentially affect the function of the protein.

Chromosome deletion is a genetic disorder that occurs when a portion of a chromosome is missing or deleted. This can happen during the formation of sperm or egg cells, or during early development of an embryo. Chromosome deletions can be inherited from a parent, or they can occur spontaneously. Chromosome deletions can have a wide range of effects on an individual, depending on which genes are affected and how much of the chromosome is deleted. Some chromosome deletions may cause no symptoms or only mild effects, while others can be more severe and lead to developmental delays, intellectual disabilities, and other health problems. Diagnosis of chromosome deletion typically involves genetic testing, such as karyotyping, which involves analyzing a sample of cells to look for abnormalities in the number or structure of chromosomes. Treatment for chromosome deletion depends on the specific effects it is causing and may include supportive care, therapy, and other interventions to help manage symptoms and improve quality of life.

In the medical field, the "5 untranslated regions" (5' UTRs) refer to the non-coding regions of messenger RNA (mRNA) molecules that are located at the 5' end (the end closest to the transcription start site) of the gene. These regions play important roles in regulating gene expression, including controlling the stability and translation of the mRNA molecule into protein. The 5' UTR can contain various regulatory elements, such as binding sites for RNA-binding proteins or microRNAs, which can affect the stability of the mRNA molecule and its ability to be translated into protein. Additionally, the 5' UTR can also play a role in determining the subcellular localization of the protein that is produced from the mRNA. Understanding the function of the 5' UTR is important for understanding how genes are regulated and how they contribute to the development and function of cells and tissues in the body.

Histidine is an amino acid that is naturally occurring in the human body. It is a building block of proteins and is essential for the proper functioning of many bodily processes. In the medical field, histidine is often used as a diagnostic tool to help diagnose certain medical conditions. For example, high levels of histidine in the blood can be a sign of a genetic disorder called histidinemia, which can cause a range of symptoms including intellectual disability, seizures, and liver problems. Histidine is also used in the treatment of certain medical conditions, such as acidosis, which is a condition in which the body's pH balance is disrupted.

The cell membrane, also known as the plasma membrane, is a thin, flexible barrier that surrounds and encloses the cell. It is composed of a phospholipid bilayer, which consists of two layers of phospholipid molecules arranged tail-to-tail. The hydrophobic tails of the phospholipids face inward, while the hydrophilic heads face outward, forming a barrier that separates the inside of the cell from the outside environment. The cell membrane also contains various proteins, including channels, receptors, and transporters, which allow the cell to communicate with its environment and regulate the movement of substances in and out of the cell. In addition, the cell membrane is studded with cholesterol molecules, which help to maintain the fluidity and stability of the membrane. The cell membrane plays a crucial role in maintaining the integrity and function of the cell, and it is involved in a wide range of cellular processes, including cell signaling, cell adhesion, and cell division.

In the medical field, "Cells, Cultured" refers to cells that have been grown and maintained in a controlled environment outside of their natural biological context, typically in a laboratory setting. This process is known as cell culture and involves the isolation of cells from a tissue or organism, followed by their growth and proliferation in a nutrient-rich medium. Cultured cells can be derived from a variety of sources, including human or animal tissues, and can be used for a wide range of applications in medicine and research. For example, cultured cells can be used to study the behavior and function of specific cell types, to develop new drugs and therapies, and to test the safety and efficacy of medical products. Cultured cells can be grown in various types of containers, such as flasks or Petri dishes, and can be maintained at different temperatures and humidity levels to optimize their growth and survival. The medium used to culture cells typically contains a combination of nutrients, growth factors, and other substances that support cell growth and proliferation. Overall, the use of cultured cells has revolutionized medical research and has led to many important discoveries and advancements in the field of medicine.

RNA-binding proteins (RBPs) are a class of proteins that interact with RNA molecules, either in the cytoplasm or in the nucleus of cells. These proteins play important roles in various cellular processes, including gene expression, RNA stability, and RNA transport. In the medical field, RBPs are of particular interest because they have been implicated in a number of diseases, including cancer, neurological disorders, and viral infections. For example, some RBPs have been shown to regulate the expression of genes that are involved in cell proliferation and survival, and mutations in these proteins can contribute to the development of cancer. Other RBPs have been implicated in the regulation of RNA stability and turnover, and changes in the levels of these proteins can affect the stability of specific mRNAs and contribute to the development of neurological disorders. In addition, RBPs play important roles in the regulation of viral infections. Many viruses encode proteins that interact with host RBPs, and these interactions can affect the stability and translation of viral mRNAs, as well as the overall pathogenesis of the infection. Overall, RBPs are an important class of proteins that play critical roles in many cellular processes, and their dysfunction has been implicated in a number of diseases. As such, they are an active area of research in the medical field, with the potential to lead to the development of new therapeutic strategies for a variety of diseases.

RNA precursors, also known as ribonucleotides or ribonucleosides, are the building blocks of RNA molecules. They are composed of a nitrogenous base, a five-carbon sugar (ribose), and a phosphate group. In the medical field, RNA precursors are important because they are the starting point for the synthesis of RNA molecules, which play a crucial role in many cellular processes, including protein synthesis, gene expression, and regulation of cellular metabolism. RNA precursors can be synthesized in the cell from nucleotides, which are the building blocks of DNA and RNA. They can also be obtained from dietary sources, such as nucleotides found in meat, fish, and dairy products. Deficiencies in RNA precursors can lead to various health problems, including anemia, fatigue, and impaired immune function. In some cases, supplementation with RNA precursors may be recommended to treat or prevent these conditions.

Arginine is an amino acid that plays a crucial role in various physiological processes in the human body. It is an essential amino acid, meaning that it cannot be synthesized by the body and must be obtained through the diet. In the medical field, arginine is used to treat a variety of conditions, including: 1. Erectile dysfunction: Arginine is a precursor to nitric oxide, which helps to relax blood vessels and improve blood flow to the penis, leading to improved sexual function. 2. Cardiovascular disease: Arginine has been shown to improve blood flow and reduce the risk of cardiovascular disease by lowering blood pressure and improving the function of the endothelium, the inner lining of blood vessels. 3. Wound healing: Arginine is involved in the production of collagen, a protein that is essential for wound healing. 4. Immune function: Arginine is involved in the production of antibodies and other immune system components, making it important for maintaining a healthy immune system. 5. Cancer: Arginine has been shown to have anti-cancer properties and may help to slow the growth of tumors. However, it is important to note that the use of arginine as a supplement is not without risks, and it is important to consult with a healthcare provider before taking any supplements.

Acid anhydride hydrolases are a group of enzymes that catalyze the hydrolysis of acid anhydrides, which are compounds that contain two oxygen atoms and one carbon atom bonded to a hydrogen atom. These enzymes are important in a variety of biological processes, including the breakdown of certain amino acids and the synthesis of certain lipids. In the medical field, acid anhydride hydrolases are often studied in the context of their role in the metabolism of certain drugs and the development of drug resistance. For example, some bacteria and viruses have evolved mechanisms that allow them to inactivate certain antibiotics by converting them into acid anhydrides and then hydrolyzing them using acid anhydride hydrolases. This can render the antibiotics ineffective and contribute to the development of drug resistance. In addition, acid anhydride hydrolases have been implicated in the development of certain diseases, including cancer. For example, some studies have suggested that the activity of certain acid anhydride hydrolases may be increased in certain types of cancer, and that inhibiting the activity of these enzymes may be a potential therapeutic strategy for treating these diseases.

Beta-galactosidase is an enzyme that is involved in the breakdown of lactose, a disaccharide sugar found in milk and other dairy products. It is produced by the lactase enzyme in the small intestine of most mammals, including humans, to help digest lactose. In the medical field, beta-galactosidase is used as a diagnostic tool to detect lactose intolerance, a condition in which the body is unable to produce enough lactase to digest lactose properly. A lactose tolerance test involves consuming a lactose solution and then measuring the amount of beta-galactosidase activity in the blood or breath. If the activity is low, it may indicate lactose intolerance. Beta-galactosidase is also used in research and biotechnology applications, such as in the production of genetically modified organisms (GMOs) and in the development of new drugs and therapies.

Bacillus subtilis is a gram-positive, rod-shaped bacterium that is commonly found in soil and the gastrointestinal tracts of animals. It is a member of the Bacillus genus and is known for its ability to form endospores, which are highly resistant to environmental stressors such as heat, radiation, and chemicals. In the medical field, B. subtilis is used in a variety of applications, including as a probiotic to promote gut health, as a source of enzymes for industrial processes, and as a model organism for studying bacterial genetics and metabolism. It has also been studied for its potential use in the treatment of certain infections, such as those caused by antibiotic-resistant bacteria. However, it is important to note that B. subtilis can also cause infections in humans, particularly in individuals with weakened immune systems. These infections can range from mild skin infections to more serious bloodstream infections. As such, it is important to use caution when working with this bacterium and to follow proper safety protocols to prevent the spread of infection.

Leucine is an essential amino acid that plays a crucial role in various biological processes in the human body. It is one of the nine essential amino acids that cannot be synthesized by the body and must be obtained through the diet. In the medical field, leucine is often used as a dietary supplement to promote muscle growth and recovery, particularly in athletes and bodybuilders. It is also used to treat certain medical conditions, such as phenylketonuria (PKU), a genetic disorder that affects the metabolism of amino acids. Leucine has been shown to have various physiological effects, including increasing protein synthesis, stimulating muscle growth, and improving insulin sensitivity. It is also involved in the regulation of gene expression and the production of neurotransmitters. However, excessive consumption of leucine can have negative effects on health, such as liver damage and increased risk of certain cancers. Therefore, it is important to consume leucine in moderation and as part of a balanced diet.

3T3 cells are a type of mouse fibroblast cell line that are commonly used in biomedical research. They are derived from the mouse embryo and are known for their ability to grow and divide indefinitely in culture. 3T3 cells are often used as a model system for studying cell growth, differentiation, and other cellular processes. They are also used in the development of new drugs and therapies, as well as in the testing of cosmetic and other products for safety and efficacy.

In the medical field, a protein subunit refers to a smaller, functional unit of a larger protein complex. Proteins are made up of chains of amino acids, and these chains can fold into complex three-dimensional structures that perform a wide range of functions in the body. Protein subunits are often formed when two or more protein chains come together to form a larger complex. These subunits can be identical or different, and they can interact with each other in various ways to perform specific functions. For example, the protein hemoglobin, which carries oxygen in red blood cells, is made up of four subunits: two alpha chains and two beta chains. Each of these subunits has a specific structure and function, and they work together to form a functional hemoglobin molecule. In the medical field, understanding the structure and function of protein subunits is important for developing treatments for a wide range of diseases and conditions, including cancer, neurological disorders, and infectious diseases.

DNA, Fungal refers to the genetic material of fungi, which is a type of eukaryotic microorganism that includes yeasts, molds, and mushrooms. Fungal DNA is composed of four types of nucleotides: adenine (A), thymine (T), cytosine (C), and guanine (G), which are arranged in a specific sequence to form the genetic code that determines the characteristics and functions of the fungus. In the medical field, fungal DNA is often studied in the context of infections caused by fungi, such as candidiasis, aspergillosis, and cryptococcosis. Fungal DNA can be detected in clinical samples, such as blood, sputum, or tissue, using molecular diagnostic techniques such as polymerase chain reaction (PCR) or DNA sequencing. These tests can help diagnose fungal infections and guide treatment decisions. Additionally, fungal DNA can be used in research to study the evolution and diversity of fungi, as well as their interactions with other organisms and the environment.

Amino acids are organic compounds that are the building blocks of proteins. They are composed of an amino group (-NH2), a carboxyl group (-COOH), and a side chain (R group) that varies in size and structure. There are 20 different amino acids that are commonly found in proteins, each with a unique side chain that gives it distinct chemical and physical properties. In the medical field, amino acids are important for a variety of functions, including the synthesis of proteins, enzymes, and hormones. They are also involved in energy metabolism and the maintenance of healthy tissues. Deficiencies in certain amino acids can lead to a range of health problems, including muscle wasting, anemia, and neurological disorders. In some cases, amino acids may be prescribed as supplements to help treat these conditions or to support overall health and wellness.

Nuclear localization signals (NLS) are short amino acid sequences that are found in the amino-terminal region of certain proteins. These signals are responsible for directing the transport of proteins into the nucleus of a cell. NLSs are recognized by specific receptors in the cytoplasm, which then transport the protein into the nucleus. Once inside the nucleus, the protein can perform its function, such as regulating gene expression or DNA replication. NLSs are important for the proper functioning of many cellular processes and are often targeted by drugs or other therapeutic agents.

Adenosine triphosphate (ATP) is a molecule that serves as the primary energy currency in living cells. It is composed of three phosphate groups attached to a ribose sugar and an adenine base. In the medical field, ATP is essential for many cellular processes, including muscle contraction, nerve impulse transmission, and the synthesis of macromolecules such as proteins and nucleic acids. ATP is produced through cellular respiration, which involves the breakdown of glucose and other molecules to release energy that is stored in the bonds of ATP. Disruptions in ATP production or utilization can lead to a variety of medical conditions, including muscle weakness, fatigue, and neurological disorders. In addition, ATP is often used as a diagnostic tool in medical testing, as levels of ATP can be measured in various bodily fluids and tissues to assess cellular health and function.

Blotting, Western is a laboratory technique used to detect specific proteins in a sample by transferring proteins from a gel to a membrane and then incubating the membrane with a specific antibody that binds to the protein of interest. The antibody is then detected using an enzyme or fluorescent label, which produces a visible signal that can be quantified. This technique is commonly used in molecular biology and biochemistry to study protein expression, localization, and function. It is also used in medical research to diagnose diseases and monitor treatment responses.

Artificial gene fusion is a technique used in the medical field to create new genes by combining two or more existing genes. This technique involves the use of genetic engineering tools to insert DNA sequences from one gene into another gene, resulting in a new gene that has the desired characteristics of both original genes. Artificial gene fusion can be used to create new genes that have therapeutic or diagnostic applications. For example, researchers can use this technique to create genes that produce proteins that can treat diseases such as cancer or genetic disorders. The new genes can also be used to create diagnostic tools that can detect the presence of specific diseases or conditions. In addition to therapeutic and diagnostic applications, artificial gene fusion can also be used to study the function of genes and to understand how they interact with each other. By creating new genes with specific characteristics, researchers can gain insights into the mechanisms that regulate gene expression and protein function. Overall, artificial gene fusion is a powerful tool in the medical field that has the potential to revolutionize the way we treat and diagnose diseases.

Oncogene proteins, viral, are proteins that are encoded by viruses and have the potential to cause cancer in infected cells. These proteins can interfere with the normal functioning of cellular genes and signaling pathways, leading to uncontrolled cell growth and division. Examples of viral oncogenes include the E6 and E7 proteins of human papillomavirus (HPV), which are associated with cervical cancer, and the v-Abl protein of the Philadelphia chromosome, which is associated with chronic myelogenous leukemia. The study of viral oncogenes is an important area of research in cancer biology and the development of new cancer treatments.

Alternative splicing is a process that occurs during the maturation of messenger RNA (mRNA) molecules in eukaryotic cells. It involves the selective inclusion or exclusion of specific exons (coding regions) from the final mRNA molecule, resulting in the production of different protein isoforms from a single gene. In other words, alternative splicing allows a single gene to code for multiple proteins with different functions, structures, and cellular locations. This process is essential for the regulation of gene expression and the diversification of protein functions in eukaryotic organisms. Mutations or abnormalities in the splicing machinery can lead to the production of abnormal protein isoforms, which can contribute to the development of various diseases, including cancer, neurological disorders, and genetic diseases. Therefore, understanding the mechanisms of alternative splicing is crucial for the development of new therapeutic strategies for these diseases.

In the medical field, "binding, competitive" refers to a type of interaction between a ligand (a molecule that binds to a receptor) and a receptor. Competitive binding occurs when two or more ligands can bind to the same receptor, but they do so in a way that limits the maximum amount of ligand that can bind to the receptor at any given time. In other words, when a ligand binds to a receptor, it competes with other ligands that may also be trying to bind to the same receptor. The binding of one ligand can prevent or reduce the binding of other ligands, depending on the relative affinities of the ligands for the receptor. Competitive binding is an important concept in pharmacology, as it helps to explain how drugs can interact with receptors in the body and how their effects can be influenced by other drugs or substances that may also be present. It is also important in the study of biological systems, where it can help to explain how molecules interact with each other in complex biological networks.

Phenylalanine is an essential amino acid that is required for the production of proteins in the body. It is one of the building blocks of the protein called tyrosine, which is important for the production of hormones, neurotransmitters, and other important molecules in the body. Phenylalanine is also used in the production of certain neurotransmitters, including dopamine and norepinephrine, which play important roles in regulating mood, motivation, and other aspects of brain function. In the medical field, phenylalanine is often used as a dietary supplement to help individuals with certain medical conditions, such as phenylketonuria (PKU), which is a genetic disorder that affects the metabolism of phenylalanine. In PKU, the body is unable to properly break down phenylalanine, which can lead to a buildup of the amino acid in the blood and brain, causing damage to the brain and other organs. Phenylalanine is also used in some medications, such as certain antidepressants, to help regulate the production of neurotransmitters in the brain. However, it is important to note that phenylalanine can interact with other medications and may not be safe for everyone to take, so it is important to consult with a healthcare provider before taking any supplements or medications containing phenylalanine.

In the medical field, peptides are short chains of amino acids that are linked together by peptide bonds. They are typically composed of 2-50 amino acids and can be found in a variety of biological molecules, including hormones, neurotransmitters, and enzymes. Peptides play important roles in many physiological processes, including growth and development, immune function, and metabolism. They can also be used as therapeutic agents to treat a variety of medical conditions, such as diabetes, cancer, and cardiovascular disease. In the pharmaceutical industry, peptides are often synthesized using chemical methods and are used as drugs or as components of drugs. They can be administered orally, intravenously, or topically, depending on the specific peptide and the condition being treated.

Luciferases are enzymes that catalyze the oxidation of luciferin, a small molecule, to produce light. In the medical field, luciferases are commonly used as reporters in bioluminescence assays, which are used to measure gene expression, protein-protein interactions, and other biological processes. One of the most well-known examples of luciferases in medicine is the green fluorescent protein (GFP) luciferase, which is derived from the jellyfish Aequorea victoria. GFP luciferase is used in a variety of applications, including monitoring gene expression in living cells and tissues, tracking the movement of cells and proteins in vivo, and studying the dynamics of signaling pathways. Another example of a luciferase used in medicine is the firefly luciferase, which is derived from the firefly Photinus pyralis. Firefly luciferase is used in bioluminescence assays to measure the activity of various enzymes and to study the metabolism of drugs and other compounds. Overall, luciferases are valuable tools in the medical field because they allow researchers to visualize and quantify biological processes in a non-invasive and sensitive manner.

CHO cells are a type of Chinese hamster ovary (CHO) cell line that is commonly used in the biotechnology industry for the production of recombinant proteins. These cells are derived from the ovaries of Chinese hamsters and have been genetically modified to produce large amounts of a specific protein or protein complex. CHO cells are often used as a host cell for the production of therapeutic proteins, such as monoclonal antibodies, growth factors, and enzymes. They are also used in research to study the structure and function of proteins, as well as to test the safety and efficacy of new drugs. One of the advantages of using CHO cells is that they are relatively easy to culture and can be grown in large quantities. They are also able to produce high levels of recombinant proteins, making them a popular choice for the production of biopharmaceuticals. However, like all cell lines, CHO cells can also have limitations and may not be suitable for all types of protein production.

Adaptor proteins, signal transducing are a class of proteins that play a crucial role in transmitting signals from the cell surface to the interior of the cell. These proteins are involved in various cellular processes such as cell growth, differentiation, and apoptosis. Adaptor proteins function as molecular bridges that connect signaling receptors on the cell surface to downstream signaling molecules inside the cell. They are characterized by their ability to bind to both the receptor and the signaling molecule, allowing them to transmit the signal from the receptor to the signaling molecule. There are several types of adaptor proteins, including SH2 domain-containing adaptor proteins, phosphotyrosine-binding (PTB) domain-containing adaptor proteins, and WW domain-containing adaptor proteins. These proteins are involved in a wide range of signaling pathways, including the insulin, growth factor, and cytokine signaling pathways. Disruptions in the function of adaptor proteins can lead to various diseases, including cancer, diabetes, and immune disorders. Therefore, understanding the role of adaptor proteins in signal transduction is important for the development of new therapeutic strategies for these diseases.

DNA-directed RNA polymerases are a group of enzymes that synthesize RNA molecules from a DNA template. These enzymes are responsible for the transcription process, which is the first step in gene expression. During transcription, the DNA sequence of a gene is copied into a complementary RNA sequence, which can then be translated into a protein. There are several different types of DNA-directed RNA polymerases, each with its own specific function and characteristics. For example, RNA polymerase I is primarily responsible for synthesizing ribosomal RNA (rRNA), which is a key component of ribosomes. RNA polymerase II is responsible for synthesizing messenger RNA (mRNA), which carries the genetic information from the DNA to the ribosomes for protein synthesis. RNA polymerase III is responsible for synthesizing small nuclear RNA (snRNA) and small Cajal body RNA (scaRNA), which play important roles in gene regulation and splicing. DNA-directed RNA polymerases are essential for the proper functioning of cells and are involved in many different biological processes, including growth, development, and response to environmental stimuli. Mutations in the genes that encode these enzymes can lead to a variety of genetic disorders and diseases.

RNA, Bacterial refers to the ribonucleic acid molecules that are produced by bacteria. These molecules play a crucial role in the functioning of bacterial cells, including the synthesis of proteins, the regulation of gene expression, and the metabolism of nutrients. Bacterial RNA can be classified into several types, including messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA), which all have specific functions within the bacterial cell. Understanding the structure and function of bacterial RNA is important for the development of new antibiotics and other treatments for bacterial infections.

Oligonucleotide probes are short, synthetic DNA or RNA molecules that are designed to bind specifically to a target sequence of DNA or RNA. They are commonly used in medical research and diagnostic applications to detect and identify specific genetic sequences or to study gene expression. In medical research, oligonucleotide probes are often used in techniques such as polymerase chain reaction (PCR) and in situ hybridization (ISH) to amplify and visualize specific DNA or RNA sequences. They can also be used in gene expression studies to measure the levels of specific mRNAs in cells or tissues. In diagnostic applications, oligonucleotide probes are used in a variety of tests, including DNA sequencing, genetic testing, and infectious disease diagnosis. For example, oligonucleotide probes can be used in PCR-based tests to detect the presence of specific pathogens in clinical samples, or in microarray-based tests to measure the expression levels of thousands of genes at once. Overall, oligonucleotide probes are a powerful tool in medical research and diagnostic applications, allowing researchers and clinicians to study and understand the genetic basis of disease and to develop new treatments and diagnostic tests.

Viral nonstructural proteins (NSPs) are proteins that are not part of the viral capsid or envelope, but are instead synthesized by the virus after it has entered a host cell. These proteins play important roles in the replication and assembly of the virus, as well as in evading the host immune system. NSPs can be classified into several functional groups, including proteases, helicases, polymerases, and methyltransferases. For example, the NSP1 protein of the influenza virus is a protease that cleaves host cell proteins to create a favorable environment for viral replication. The NSP3 protein of the hepatitis C virus is a helicase that unwinds the viral RNA genome to allow for transcription and replication. NSPs can also be targeted by antiviral drugs, as they are often essential for viral replication. For example, the protease inhibitors used to treat HIV target the viral protease enzyme, which is an NSP. Similarly, the NS5B polymerase inhibitors used to treat hepatitis C target the viral polymerase enzyme, which is also an NSP. Overall, NSPs play important roles in the life cycle of viruses and are an important target for antiviral therapy.

Phosphoproteins are proteins that have been modified by the addition of a phosphate group to one or more of their amino acid residues. This modification is known as phosphorylation, and it is a common post-translational modification that plays a critical role in regulating many cellular processes, including signal transduction, metabolism, and gene expression. Phosphoproteins are involved in a wide range of biological functions, including cell growth and division, cell migration and differentiation, and the regulation of gene expression. They are also involved in many diseases, including cancer, diabetes, and cardiovascular disease. Phosphoproteins can be detected and studied using a variety of techniques, including mass spectrometry, Western blotting, and immunoprecipitation. These techniques allow researchers to identify and quantify the phosphorylation status of specific proteins in cells and tissues, and to study the effects of changes in phosphorylation on protein function and cellular processes.

Homeodomain proteins are a class of transcription factors that play a crucial role in the development and differentiation of cells and tissues in animals. They are characterized by a highly conserved DNA-binding domain called the homeodomain, which allows them to recognize and bind to specific DNA sequences. Homeodomain proteins are involved in a wide range of biological processes, including embryonic development, tissue differentiation, and organogenesis. They regulate the expression of genes that are essential for these processes by binding to specific DNA sequences and either activating or repressing the transcription of target genes. There are many different types of homeodomain proteins, each with its own unique function and target genes. Some examples of homeodomain proteins include the Hox genes, which are involved in the development of the body plan in animals, and the Pax genes, which are involved in the development of the nervous system. Mutations in homeodomain proteins can lead to a variety of developmental disorders, including congenital malformations and intellectual disabilities. Understanding the function and regulation of homeodomain proteins is therefore important for the development of new treatments for these conditions.

Chromosome mapping is a technique used in genetics to identify the location of genes on chromosomes. It involves analyzing the physical and genetic characteristics of chromosomes to determine their structure and organization. This information can be used to identify genetic disorders, understand the inheritance patterns of traits, and develop new treatments for genetic diseases. Chromosome mapping can be done using various techniques, including karyotyping, fluorescence in situ hybridization (FISH), and array comparative genomic hybridization (array CGH).

In the medical field, macromolecular substances refer to large molecules that are composed of repeating units, such as proteins, carbohydrates, lipids, and nucleic acids. These molecules are essential for many biological processes, including cell signaling, metabolism, and structural support. Macromolecular substances are typically composed of thousands or even millions of atoms, and they can range in size from a few nanometers to several micrometers. They are often found in the form of fibers, sheets, or other complex structures, and they can be found in a variety of biological tissues and fluids. Examples of macromolecular substances in the medical field include: - Proteins: These are large molecules composed of amino acids that are involved in a wide range of biological functions, including enzyme catalysis, structural support, and immune response. - Carbohydrates: These are molecules composed of carbon, hydrogen, and oxygen atoms that are involved in energy storage, cell signaling, and structural support. - Lipids: These are molecules composed of fatty acids and glycerol that are involved in energy storage, cell membrane structure, and signaling. - Nucleic acids: These are molecules composed of nucleotides that are involved in genetic information storage and transfer. Macromolecular substances are important for many medical applications, including drug delivery, tissue engineering, and gene therapy. Understanding the structure and function of these molecules is essential for developing new treatments and therapies for a wide range of diseases and conditions.

Tryptophan is an essential amino acid that is required for the production of proteins in the body. It is also a precursor to the neurotransmitter serotonin, which plays a role in regulating mood, appetite, and sleep. In the medical field, tryptophan is often used to treat conditions such as depression, anxiety, and insomnia. It is also used to help manage symptoms of premenstrual syndrome (PMS) and to improve athletic performance. Tryptophan supplements are available over-the-counter, but it is important to talk to a healthcare provider before taking them, as they can interact with certain medications and may have side effects.

Oligonucleotides are short chains of nucleotides, which are the building blocks of DNA and RNA. In the medical field, oligonucleotides are often used as therapeutic agents to target specific genes or genetic mutations that are associated with various diseases. There are several types of oligonucleotides, including antisense oligonucleotides, siRNA (small interfering RNA), miRNA (microRNA), and aptamers. Antisense oligonucleotides are designed to bind to specific messenger RNA (mRNA) molecules and prevent them from being translated into proteins. siRNA and miRNA are designed to degrade specific mRNA molecules, while aptamers are designed to bind to specific proteins and modulate their activity. Oligonucleotides have been used to treat a variety of diseases, including genetic disorders such as spinal muscular atrophy, Duchenne muscular dystrophy, and Huntington's disease, as well as non-genetic diseases such as cancer, viral infections, and autoimmune disorders. They are also being studied as potential treatments for COVID-19. However, oligonucleotides can also have potential side effects, such as immune responses and off-target effects, which can limit their effectiveness and safety. Therefore, careful design and testing are necessary to ensure the optimal therapeutic benefits of oligonucleotides.

Membrane transport proteins are proteins that span the cell membrane and facilitate the movement of molecules across the membrane. These proteins play a crucial role in maintaining the proper balance of ions and molecules inside and outside of cells, and are involved in a wide range of cellular processes, including nutrient uptake, waste removal, and signal transduction. There are several types of membrane transport proteins, including channels, carriers, and pumps. Channels are pore-forming proteins that allow specific ions or molecules to pass through the membrane down their concentration gradient. Carriers are proteins that bind to specific molecules and change shape to transport them across the membrane against their concentration gradient. Pumps are proteins that use energy to actively transport molecules across the membrane against their concentration gradient. Membrane transport proteins are essential for the proper functioning of cells and are involved in many diseases, including cystic fibrosis, sickle cell anemia, and certain types of cancer. Understanding the structure and function of these proteins is important for developing new treatments for these diseases.

In the medical field, a "nonsense codon" is a specific type of genetic code that signals the termination of protein synthesis. Nonsense codons are also known as "stop codons" because they indicate the end of the reading frame for a particular gene. During protein synthesis, the ribosome reads the genetic code in the form of messenger RNA (mRNA) and uses it to build a chain of amino acids that will eventually form a protein. Each three-letter sequence of nucleotides in the mRNA corresponds to a specific amino acid, and the ribosome reads these codons in order to build the protein. However, if a nonsense codon is encountered, the ribosome stops the process of protein synthesis and releases the partially completed protein. This can occur for a variety of reasons, including genetic mutations that change the sequence of nucleotides in the mRNA, or errors during transcription or translation. Nonsense codons can have a significant impact on the function of a protein, as they can lead to the production of truncated or non-functional proteins. In some cases, the presence of nonsense codons can also trigger a cellular response that leads to the degradation of the affected mRNA or the activation of other genes that help to compensate for the loss of function.

Zinc is a chemical element that is essential for human health. In the medical field, zinc is used in a variety of ways, including as a supplement to treat and prevent certain health conditions. Zinc is involved in many important bodily functions, including immune system function, wound healing, and DNA synthesis. It is also important for the proper functioning of the senses of taste and smell. Zinc deficiency can lead to a range of health problems, including impaired immune function, delayed wound healing, and impaired growth and development in children. Zinc supplements are often recommended for people who are at risk of zinc deficiency, such as pregnant and breastfeeding women, people with certain medical conditions, and people who follow a vegetarian or vegan diet. In addition to its use as a supplement, zinc is also used in some medications, such as those used to treat acne and the common cold. It is also used in some over-the-counter products, such as antacids and nasal sprays. Overall, zinc is an important nutrient that plays a vital role in maintaining good health.

Drosophila proteins are proteins that are found in the fruit fly Drosophila melanogaster, which is a widely used model organism in genetics and molecular biology research. These proteins have been studied extensively because they share many similarities with human proteins, making them useful for understanding the function and regulation of human genes and proteins. In the medical field, Drosophila proteins are often used as a model for studying human diseases, particularly those that are caused by genetic mutations. By studying the effects of these mutations on Drosophila proteins, researchers can gain insights into the underlying mechanisms of these diseases and potentially identify new therapeutic targets. Drosophila proteins have also been used to study a wide range of biological processes, including development, aging, and neurobiology. For example, researchers have used Drosophila to study the role of specific genes and proteins in the development of the nervous system, as well as the mechanisms underlying age-related diseases such as Alzheimer's and Parkinson's.

Bacteriophage T4 is a virus that specifically infects and replicates within bacteria. It is a member of the family Myoviridae and is known for its ability to cause lysis (rupture) of bacterial cells, leading to the release of new phage particles. In the medical field, bacteriophage T4 has been studied as a potential therapeutic agent for bacterial infections. Because it is specific to certain bacterial strains, it has the potential to target and eliminate harmful bacteria without harming beneficial bacteria in the body. Additionally, bacteriophage T4 has been used as a tool for studying bacterial genetics and molecular biology, as well as for developing new vaccines and treatments for bacterial infections.

Glutamic acid is an amino acid that is naturally occurring in the human body and is essential for various bodily functions. It is a non-essential amino acid, meaning that the body can produce it from other compounds, but it is still important for maintaining good health. In the medical field, glutamic acid is sometimes used as a medication to treat certain conditions. For example, it is used to treat epilepsy, a neurological disorder characterized by recurrent seizures. Glutamic acid is also used to treat certain types of brain injuries, such as stroke, by promoting the growth of new brain cells. In addition to its medicinal uses, glutamic acid is also an important component of the diet. It is found in many foods, including meats, fish, poultry, dairy products, and grains. It is also available as a dietary supplement.

In the medical field, a polypeptide is a chain of amino acids that are linked together by peptide bonds. Polypeptides can be further classified into different types based on their size, structure, and function. One type of polypeptide is a polypeptide chain that is made up of multiple polypeptide subunits, which are linked together to form a single, larger polypeptide chain. These types of polypeptides are called polyproteins. Polyproteins are often found in the cells of living organisms and play important roles in a variety of biological processes. For example, some polyproteins are involved in the regulation of gene expression, while others are involved in the formation and function of cellular structures such as membranes and organelles. Some polyproteins are also involved in the immune response, helping to protect the body against infection and disease. In the medical field, polyproteins are often studied in order to better understand their roles in various biological processes and to develop new treatments for diseases and conditions that are caused by disruptions in the function of polyproteins.

RNA replicase is an enzyme that is responsible for replicating RNA molecules. In the context of the medical field, RNA replicases are particularly important in the replication of viruses that use RNA as their genetic material. These enzymes are responsible for copying the viral RNA genome, which is then used to produce new viral particles. RNA replicases are also involved in the replication of certain types of retroviruses, which are viruses that use RNA as their genetic material but reverse transcribe their RNA genome into DNA, which is then integrated into the host cell's genome. In this process, the RNA replicase enzyme is responsible for copying the viral RNA genome and producing a complementary DNA strand, which is then used to produce new viral particles. RNA replicases are also important in the replication of certain types of bacteria, such as the bacteria that cause the disease Q fever. In these bacteria, the RNA replicase enzyme is responsible for copying the bacterial RNA genome and producing new bacterial particles. Overall, RNA replicases play a critical role in the replication of viruses and certain types of bacteria, and understanding the function and regulation of these enzymes is important for the development of new treatments for viral and bacterial infections.

RNA helicases are a class of enzymes that play a crucial role in various cellular processes, including gene expression, RNA metabolism, and DNA replication. These enzymes are responsible for unwinding the double-stranded RNA or DNA helix, thereby facilitating the access of other proteins to the nucleic acid strands. RNA helicases are involved in several biological processes, including transcription, translation, splicing, and RNA degradation. They are also involved in the initiation of reverse transcription during retroviral replication and in the unwinding of RNA-DNA hybrids during DNA repair. In the medical field, RNA helicases are of particular interest due to their involvement in various diseases. For example, mutations in certain RNA helicases have been linked to neurodegenerative disorders such as amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). Additionally, RNA helicases have been implicated in various types of cancer, including breast, ovarian, and lung cancer. Overall, RNA helicases are essential enzymes that play a critical role in many cellular processes and are of significant interest in the medical field due to their involvement in various diseases.

Glutathione transferase (GST) is an enzyme that plays a crucial role in the detoxification of various harmful substances in the body, including drugs, toxins, and carcinogens. It is a member of a large family of enzymes that are found in all living organisms and are involved in a wide range of biological processes, including metabolism, cell signaling, and immune response. In the medical field, GST is often studied in relation to various diseases and conditions, including cancer, liver disease, and neurodegenerative disorders. GST enzymes are also used as biomarkers for exposure to environmental toxins and as targets for the development of new drugs for the treatment of these conditions. Overall, GST is an important enzyme that helps to protect the body from harmful substances and plays a critical role in maintaining overall health and well-being.

In the medical field, "Amino Acids, Acidic" refers to a group of amino acids that have a net negative charge at physiological pH levels. These amino acids are called acidic because they donate a hydrogen ion (H+) when they react with a base. The most common acidic amino acids are aspartic acid and glutamic acid. These amino acids are important building blocks of proteins and play a crucial role in various physiological processes in the body, including metabolism, nerve transmission, and immune function. Imbalances in the levels of acidic amino acids can lead to various health problems, including metabolic disorders, neurological disorders, and immune system dysfunction. Therefore, the proper balance of acidic amino acids is essential for maintaining good health.

RNA, Small Nuclear (snRNA) is a type of RNA molecule that is involved in the process of RNA splicing. RNA splicing is the process by which introns (non-coding sequences) are removed from pre-mRNA molecules and exons (coding sequences) are joined together to form mature mRNA molecules. snRNA molecules are located in the nucleus of eukaryotic cells and are part of a complex called the spliceosome, which carries out the process of RNA splicing. There are several different types of snRNA molecules, each of which has a specific role in the splicing process. snRNA molecules are also involved in other processes, such as the regulation of gene expression and the maintenance of genome stability.

Protein-Serine-Threonine Kinases (PSTKs) are a family of enzymes that play a crucial role in regulating various cellular processes, including cell growth, differentiation, metabolism, and apoptosis. These enzymes phosphorylate specific amino acids, such as serine and threonine, on target proteins, thereby altering their activity, stability, or localization within the cell. PSTKs are involved in a wide range of diseases, including cancer, diabetes, cardiovascular disease, and neurodegenerative disorders. Therefore, understanding the function and regulation of PSTKs is important for developing new therapeutic strategies for these diseases.

Bovine papillomavirus 1 (BPV-1) is a type of papillomavirus that infects cattle and is the causative agent of bovine digital dermatitis (BDD), a common and economically important skin disease in dairy and beef cattle. BDD is characterized by the development of painful, ulcerative lesions on the feet of affected animals, which can lead to reduced milk production, decreased weight gain, and increased susceptibility to other infections. BPV-1 is transmitted through direct contact between infected and uninfected animals, and can persist in infected animals for the life of the animal. Treatment of BDD typically involves the use of antiseptic agents to clean and dress the affected areas, as well as the use of vaccines to prevent infection.

Eunuchism is a medical condition in which a person is born without, or later loses, the ability to produce sperm or eggs. This can occur due to a variety of factors, including genetic abnormalities, hormonal imbalances, or surgical procedures. In some cases, eunuchism may be a desired outcome, as some individuals may choose to undergo surgical procedures to become eunuchs for religious or cultural reasons. However, in most cases, eunuchism is considered a medical condition that can have significant physical and psychological effects on the individual. Treatment options for eunuchism may include hormone therapy, fertility treatments, or psychological counseling.

Protein isoforms refer to different forms of a protein that are produced by alternative splicing of the same gene. Alternative splicing is a process by which different combinations of exons (coding regions) are selected from the pre-mRNA transcript of a gene, resulting in the production of different protein isoforms with slightly different amino acid sequences. Protein isoforms can have different functions, localization, and stability, and can play distinct roles in cellular processes. For example, the same gene may produce a protein isoform that is expressed in the nucleus and another isoform that is expressed in the cytoplasm. Alternatively, different isoforms of the same protein may have different substrate specificity or binding affinity for other molecules. Dysregulation of alternative splicing can lead to the production of abnormal protein isoforms, which can contribute to the development of various diseases, including cancer, neurological disorders, and cardiovascular diseases. Therefore, understanding the mechanisms of alternative splicing and the functional consequences of protein isoforms is an important area of research in the medical field.

Endopeptidases are enzymes that cleave peptide bonds within polypeptide chains, typically within the interior of the molecule. They are a type of protease, which are enzymes that break down proteins into smaller peptides or individual amino acids. Endopeptidases are involved in a variety of physiological processes, including the regulation of hormone levels, the breakdown of blood clots, and the maintenance of tissue homeostasis. They are also important in the immune response, where they help to degrade and remove damaged or infected cells. In the medical field, endopeptidases are often used as research tools to study protein function and as potential therapeutic agents for a variety of diseases, including cancer, neurodegenerative disorders, and inflammatory conditions.

In the medical field, RNA caps refer to the modified 7-methylguanosine (m7G) nucleotide that is added to the 5' end of a eukaryotic messenger RNA (mRNA) molecule during transcription. This modification, known as 5' capping, serves several important functions in the regulation of gene expression. First, the RNA cap helps to protect the mRNA molecule from degradation by exonucleases, which are enzymes that degrade RNA molecules from the ends. The cap also serves as a recognition site for various cellular factors that are involved in the processing and transport of mRNA molecules. In addition, the RNA cap plays a role in the initiation of translation, which is the process by which the genetic information encoded in mRNA is used to synthesize proteins. The cap interacts with specific proteins on the ribosome, which helps to recruit the ribosome to the mRNA molecule and initiate the process of translation. Overall, RNA caps are an important feature of eukaryotic mRNA molecules and play a critical role in the regulation of gene expression and protein synthesis.

Homogentisate 1,2-dioxygenase (HGO) is an enzyme that plays a role in the metabolism of aromatic amino acids. It is involved in the degradation of homogentisic acid, which is a byproduct of the metabolism of tyrosine and phenylalanine. HGO catalyzes the conversion of homogentisic acid to maleylacetoacetate, which is then further metabolized to fumarate and acetoacetate. This enzyme is encoded by the HGO gene in humans and is primarily found in the liver and kidneys. Mutations in the HGO gene can lead to a rare genetic disorder called alkaptonuria, which is characterized by the accumulation of homogentisic acid in the body and the formation of dark-colored deposits in connective tissues.

Proto-oncogene proteins B-raf, also known as B-Raf or Raf-1, are a family of serine/threonine protein kinases that play a critical role in regulating cell growth and division. They are encoded by the B-raf gene and are found in a variety of tissues throughout the body. B-Raf is a member of the Raf family of kinases, which are involved in the Ras signaling pathway. This pathway is a key regulator of cell proliferation, differentiation, and survival, and is often dysregulated in cancer. B-Raf is activated by phosphorylation, which leads to the activation of downstream signaling molecules and the promotion of cell growth and division. Mutations in the B-raf gene are associated with several types of cancer, including melanoma, colorectal cancer, and thyroid cancer. These mutations can lead to the constitutive activation of the B-Raf protein, which can promote uncontrolled cell growth and division, leading to the development of cancer. In the medical field, B-Raf inhibitors are used as targeted therapies for the treatment of certain types of cancer, particularly melanoma. These drugs work by inhibiting the activity of the B-Raf protein, thereby blocking the Ras signaling pathway and preventing the promotion of cell growth and division.

DNA, or deoxyribonucleic acid, is a molecule that carries genetic information in living organisms. It is composed of four types of nitrogen-containing molecules called nucleotides, which are arranged in a specific sequence to form the genetic code. Neoplasm refers to an abnormal growth of cells in the body, which can be either benign (non-cancerous) or malignant (cancerous). Neoplasms can occur in any part of the body and can be caused by a variety of factors, including genetic mutations, exposure to carcinogens, and hormonal imbalances. In the medical field, DNA and neoplasms are closely related because many types of cancer are caused by mutations in the DNA of cells. These mutations can lead to uncontrolled cell growth and the formation of tumors. DNA analysis is often used to diagnose and treat cancer, as well as to identify individuals who are at increased risk of developing the disease.

In the medical field, "Killer Factors, Yeast" refers to the production of toxic substances by certain types of yeast that can cause harm to the host organism. These toxic substances are known as killer factors and are produced by some strains of yeast, such as Candida albicans, which is a common cause of yeast infections in humans. Killer factors produced by yeast can have a variety of effects on the host organism, depending on the type and concentration of the factor. Some killer factors can cause damage to the host's cells and tissues, while others can interfere with the host's immune system and make it more susceptible to infection. In some cases, killer factors produced by yeast can also be harmful to other microorganisms, such as bacteria, which can make yeast infections more difficult to treat. Understanding the production and effects of killer factors by yeast is important for the development of effective treatments for yeast infections and other conditions caused by yeast overgrowth.

Tumor suppressor proteins are a group of proteins that play a crucial role in regulating cell growth and preventing the development of cancer. These proteins act as brakes on the cell cycle, preventing cells from dividing and multiplying uncontrollably. They also help to repair damaged DNA and prevent the formation of tumors. Tumor suppressor proteins are encoded by genes that are located on specific chromosomes. When these genes are functioning properly, they produce proteins that help to regulate cell growth and prevent the development of cancer. However, when these genes are mutated or damaged, the proteins they produce may not function properly, leading to uncontrolled cell growth and the development of cancer. There are many different tumor suppressor proteins, each with its own specific function. Some of the most well-known tumor suppressor proteins include p53, BRCA1, and BRCA2. These proteins are involved in regulating cell cycle checkpoints, repairing damaged DNA, and preventing the formation of tumors. In summary, tumor suppressor proteins are a group of proteins that play a critical role in regulating cell growth and preventing the development of cancer. When these proteins are functioning properly, they help to maintain the normal balance of cell growth and division, but when they are mutated or damaged, they can contribute to the development of cancer.

In the medical field, base pairing refers to the specific pairing of nucleotides (the building blocks of DNA and RNA) with each other. In DNA, adenine (A) always pairs with thymine (T), and cytosine (C) always pairs with guanine (G). This specific pairing is due to the hydrogen bonds that form between the nitrogenous bases of the nucleotides. The base pairing is essential for the stability and function of DNA, as it allows the genetic information encoded in the DNA to be accurately replicated and transmitted to daughter cells during cell division. Additionally, the base pairing is also important for the process of transcription, where the genetic information in DNA is used to synthesize RNA.

In the medical field, a peptide fragment refers to a short chain of amino acids that are derived from a larger peptide or protein molecule. Peptide fragments can be generated through various techniques, such as enzymatic digestion or chemical cleavage, and are often used in diagnostic and therapeutic applications. Peptide fragments can be used as biomarkers for various diseases, as they may be present in the body at elevated levels in response to specific conditions. For example, certain peptide fragments have been identified as potential biomarkers for cancer, neurodegenerative diseases, and cardiovascular disease. In addition, peptide fragments can be used as therapeutic agents themselves. For example, some peptide fragments have been shown to have anti-inflammatory or anti-cancer properties, and are being investigated as potential treatments for various diseases. Overall, peptide fragments play an important role in the medical field, both as diagnostic tools and as potential therapeutic agents.

Biological transport refers to the movement of molecules, such as nutrients, waste products, and signaling molecules, across cell membranes and through the body's various transport systems. This process is essential for maintaining homeostasis, which is the body's ability to maintain a stable internal environment despite changes in the external environment. There are several mechanisms of biological transport, including passive transport, active transport, facilitated diffusion, and endocytosis. Passive transport occurs when molecules move down a concentration gradient, from an area of high concentration to an area of low concentration. Active transport, on the other hand, requires energy to move molecules against a concentration gradient. Facilitated diffusion involves the use of transport proteins to move molecules across the cell membrane. Endocytosis is a process by which cells take in molecules from the extracellular environment by engulfing them in vesicles. In the medical field, understanding the mechanisms of biological transport is important for understanding how drugs and other therapeutic agents are absorbed, distributed, metabolized, and excreted by the body. This knowledge can be used to design drugs that are more effective and have fewer side effects. It is also important for understanding how diseases, such as cancer and diabetes, affect the body's transport systems and how this can be targeted for treatment.

Agrobacterium tumefaciens is a type of soil bacterium that is known for its ability to transfer genetic material to plant cells. This bacterium is commonly used in genetic engineering to introduce foreign DNA into plant cells, which can then be used to create genetically modified plants with desired traits. In the medical field, Agrobacterium tumefaciens has been studied for its potential use in gene therapy. Researchers have used this bacterium to deliver therapeutic genes directly to cells in the body, with the goal of treating a variety of diseases, including cancer, genetic disorders, and viral infections. However, it is important to note that Agrobacterium tumefaciens is not currently used in medical treatments and more research is needed to determine its safety and effectiveness in humans.

2017). "Analysis of 100,000 human cancer genomes reveals the landscape of tumor mutational burden". Genome Med. 9 (1): 34. doi: ... Genetics, Mutation, DNA, Tumor, Cancer research). ... Tumour mutational burden (abbreviated as TMB) is a genetic ... 2019). "Tumor Mutational Burden and Efficacy of Immune Checkpoint Inhibitors: A Systematic Review and Meta-Analysis". Cancers. ... TMB is defined as the number of somatic mutations/megabase whereas mutational signatures are distinct mutational patterns of ...
Cancer mutational signatures analyses require genomic data from cancer genome sequencing with paired-normal DNA sequencing in ... DNA replication infidelity DNA proofreading is the process by which DNA polymerase excises an incorrectly incorporated ... which causes crosslinking of DNA and interferes with DNA replication and DNA repair. Cancer cells are most impacted because of ... Four COSMIC mutational signatures have been associated with DNA mismatch repair deficiency and found in tumors with ...
A mutational analysis of the FLP binding site". Journal of Molecular Biology. 201 (2): 405-21. doi:10.1016/0022-2836(88)90147-7 ... The nucleophilic properties of the tyrosine attack and bind to the 3'-phosphate at the point of DNA cleavage. The resulting 5'- ... hydroxyl group of the cleaved DNA acts as the nucleophile and attacks the 3'-phosphate on the complementarily cleaved DNA ... It does so by causing recombination between the two inverted repetitions on the 2 µ plasmid during DNA replication. This ...
Sriskanda V, Shuman S (January 1998). "Chlorella virus DNA ligase: nick recognition and mutational analysis". Nucleic Acids Res ... With human DNA ligase, this forms a crystallized complex. The complex, which has a DNA-adenylate intermediate, allows DNA ... At the end of the segment that DNA polymerase acts on, DNA ligase must repair the final segment of DNA backbone in order to ... The nicks allow the DNA to take on a circular shape. Nicked DNA can be the result of DNA damage or purposeful, regulated ...
"Mutational analysis of the damage-recognition and catalytic mechanism of human SMUG1 DNA glycosylase". Nucleic Acids Res. 32 ( ... Uracil-DNA glycosylases are DNA repair enzymes that excise uracil residues from DNA by cleaving the N-glycosydic bond, ... Lindahl, T. (1986). "DNA Glycosylases in DNA Repair". Mechanisms of DNA Damage and Repair. 38: 335-340. doi:10.1007/978-1-4615- ... This was the most frequent DNA repair abnormality found among the 8 DNA repair genes tested. NEIL1 was also one of six DNA ...
Shen ES, Whitlock JP (April 1992). "Protein-DNA interactions at a dioxin-responsive enhancer. Mutational analysis of the DNA- ... Analysis of six bona fide DNA-binding sites for the liganded Ah receptor". The Journal of Biological Chemistry. 268 (9): 6575- ... "In vitro analysis of Ah receptor domains involved in ligand-activated DNA recognition". Proceedings of the National Academy of ... The first is the basic-region (b), which is involved in the binding of the transcription factor to DNA. The second is the helix ...
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"Crystal structure and mutational analysis of human uracil-DNA glycosylase: structural basis for specificity and catalysis". ... DNA sequences from bacteria in permafrost were amplified using PCR. One series of runs amplified the DNA sequences as-is (to ... One important function of uracil-DNA glycosylases is to prevent mutagenesis by eliminating uracil from DNA molecules by ... no DNA repair), or else through reduction of metabolic activity to a very low rate, just sufficient to carry out ongoing DNA ...
2009 ; 582 : 49-57 Mutational analysis of the preferential binding of human topoisomerase I to supercoiled DNA. Yang Z, Carey ... Effects of DNA and protein size on substrate cleavage by human tyrosyl-DNA phosphodiesterase 1. Interthal H, Champoux JJ The ... DNA Topoisomerases: Structure, Function, and Mechanism, Vol. 70:369-413 (Volume publication date July 2001). Annual review of ... 2009 Nov; 284 47: 32225-38 Assays for the preferential binding of human topoisomerase I to supercoiled DNA. Yang Z, Champoux JJ ...
... and Genome Data Analysis Centers. Each cancer type will undergo comprehensive genomic characterization and analysis. The data ... COSMIC also includes mutational data published in scientific literature. The TCGA is a multi-institutional effort to understand ... It is a biochemical laboratory method for the characterization and identification of the DNA or RNA sequences of cancer cell(s ... This analysis can be used to make pharmacological treatment recommendations. As of February 2012, this has only been done for ...
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Although both mitochondrial and nuclear DNA damage can contribute to aging, nuclear DNA is the main subject of this analysis. ... compiled a lengthy list of mouse mutational models with pathologic features of premature aging, all caused by different DNA ... DNA polymerase gamma is the enzyme that replicates mitochondrial DNA. A mouse mutant with a defect in this DNA polymerase is ... If a DNA repair protein is deficient, unrepaired DNA damages tend to accumulate. Such accumulated DNA damages appear to cause ...
Analysis of the brains of AD patients suggested an impaired function of the DNA repair pathway, which would cause reduce the ... Comparing the mtDNA mutational spectra of hundreds of mammalian species, it has been recently demonstrated that species with ... Mitochondrial DNA is replicated by the DNA polymerase gamma complex which is composed of a 140 kDa catalytic DNA polymerase ... Mitochondrial DNA is only a small portion of the DNA in a eukaryotic cell; most of the DNA can be found in the cell nucleus and ...
... that binds to DNA and a C-terminal domain (CTD). Mutational analyses have shown that without a functional RepC protein, the Ti ... affecting its ability to deliver DNA. Conversely, little is known about VirD3, and mutational analyses have not provided any ... priming the process of DNA ligation, where the T-DNA is permanently joint to the plant genome. The T-DNA region is flanked at ... For the T-DNA, a nick will be created at the T-DNA's border sequence, and the nicked T-strand will be transported to the cell ...
... as shown using mutational footprint analyses in Caenorrhabditis elegans. Approximately half of all ovarian cancers are ... In humans, DNA polymerase theta, encoded by the POLQ gene, plays a central role in microhomology-mediated end joining. ... Liang L, Deng L, Chen Y, Li GC, Shao C, Tischfield JA (September 2005). "Modulation of DNA end joining by nuclear proteins". ... Following annealing, any overhanging bases (flaps) are removed by nucleases such as Fen1 and gaps are filled in by DNA ...
Nucleotide sequence context influences mutation probability and analysis of mutational (mutable) DNA motifs can be essential ... If DNA repair is deficient, DNA damage tends to accumulate. Such excess DNA damage can increase mutational errors during DNA ... Mutational analysis of entire gene families revealed that genes of the same family have similar functions, as predicted by ... 2008). "Quantitative analysis of mitochondrial DNA 4977-bp deletion in sporadic breast cancer and benign breast diseases". ...
Haber DA, Velculescu VE (June 2014). "Blood-based analyses of cancer: circulating tumor cells and circulating tumor DNA". ... "Mutational analysis of the tyrosine kinome in colorectal cancers". Science. 300 (5621): 949. doi:10.1126/science.1082596. PMID ... Ding L, Wendl MC, Koboldt DC, Mardis ER (October 2010). "Analysis of next-generation genomic data in cancer: accomplishments ... SAGE contributed to the development of next-generation sequencing methods used for genome-wide expression analyses. In the ...
... mutational analysis introduces single/double mutations outside the ribozyme to ensure the observed ribozyme activity is ... Second, a series of DNA oligomer complementary to different regions of AS1/2 were used to rescue the ribozyme activity; the ... Rajagopal P, Feigon J (June 1989). "Triple-strand formation in the homopurine:homopyrimidine DNA oligonucleotides d(G-A)4 and d ... Sklenár V, Feigon J (June 1990). "Formation of a stable triplex from a single DNA strand". Nature. 345 (6278): 836-838. Bibcode ...
PMID 11780052.} Soung YH, Lee JW, Kim SY (2006). "Mutational analysis of the kinase domain of MYLK2 gene in common human ... Deloukas P, Matthews LH, Ashurst J (2001). "The DNA sequence and comparative analysis of human chromosome 20". Nature. 414 ( ... Strausberg RL, Feingold EA, Grouse LH (2002). "Generation and initial analysis of more than 15,000 full-length human and mouse ... Jeronimo C, Forget D, Bouchard A (2007). "Systematic analysis of the protein interaction network for the human transcription ...
DNA mutational analysis revealed that the child was homozygous for a novel E64K mutation and that his mother and father were ... "Real time PCR assays to detect common mutations in the biotinidase gene and application of mutational analysis to newborn ...
Tavaré S (1986). "Some Probabilistic and Statistical Problems in the Analysis of DNA Sequences" (PDF). Lectures on Mathematics ... For example, mutational biases and purifying selection favoring conservative changes are probably both responsible for the ... In DNA evolution, under the assumption of a common process for each site, the stationary frequencies π A , π G , π C , π T {\ ... Consider a DNA sequence of fixed length m evolving in time by base replacement. Assume that the processes followed by the m ...
2006). "DNA sequence and analysis of human chromosome 8". Nature. 439 (7074): 331-5. Bibcode:2006Natur.439..331N. doi:10.1038/ ... 2007). "Mutational analysis of the HGSNAT gene in Italian patients with mucopolysaccharidosis IIIC (Sanfilippo C syndrome). ... 2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci ... DNA Res. 12 (2): 117-26. doi:10.1093/dnares/12.2.117. PMID 16303743. Kimura K, Wakamatsu A, Suzuki Y, et al. (2006). " ...
"Mutational analysis of the N-terminal DNA-binding domain of sleeping beauty transposase: critical residues for DNA binding and ... DNA transposons translocate from one DNA site to another in a simple, cut-and-paste manner (Fig. 1). Transposition is a precise ... DNA transposons precisely insert defined DNA sequences (Fig. 1) almost randomly into host genomes thereby increasing the ... The insertion site can be elsewhere in the same DNA molecule, or in another DNA molecule (or chromosome). In mammalian genomes ...
Mutational analysis for the yeast ARS elements have shown that any mutation in the B1, B2 and B3 regions result in a reduction ... Melting of DNA occurs within domain B2, induced by attachment of ARS binding factor 1 to B3. A1 and B1 domain binds with origin ...
Once regions of DNA methylation are identified, a number of bioinformatics analyses can be applied to answer certain biological ... For example, silencing of tumour-suppressor genes in cancer can be attributed to DNA methylation. By identifying mutational ... Genomic DNA is extracted (DNA extraction) from the cells and purified. The purified DNA is then subjected to sonication to ... as the purified fraction of methylated DNA can be input to high-throughput DNA detection methods such as high-resolution DNA ...
Phylogenetic analyses and sequence alignment are often considered jointly, as phylogenetic analyses using DNA or RNA require ... Potential benefits include the reduction of mutational biases and a reduced number of characters, which may speed analyses. ... All of which possess their own strengths and weaknesses and may be specialized for distinct sequence types (DNA, RNA or protein ... Using RNA for phylogenetic analysis comes with its own unique set of strengths and weaknesses. large set of characters cost- ...
SARS-CoV-2 Mutational Signature Associated With Mutagenic Antiviral Drug * PentaBase Demonstrates qPCR Method for Direct DNA ...
Mutational Analysis. The techniques for mutational analysis include screening by single-strand conformation polymorphism (SSCP ... The criterion standard to detect the exact DNA change is determination of genomic DNA; direct DNA sequencing must be carried ... Once lymphocyte populations are enumerated by flow cytometry, mutational analysis usually can be initiated based on the ... and enzyme levels can establish the diagnosis when DNA analysis is not available. Percutaneous umbilical blood sampling is ...
DNA Mutational Analysis * Diagnosis, Differential * Female * Humans * Male * Middle Aged * Myotonic Dystrophy / diagnosis* ...
DNA Copy Number Variations. *DNA Mutational Analysis. *Gene Expression Profiling. *DNA-Binding Proteins ... DNA binding - DNA packaging - Golgi apparatus - histone-lysine N-methyltransferase activity - nucleolus - nucleus - regulation ... Systems biology-based analyses could play an important role in the holistic analysis of the impact of HCV on hepatocellular ... Comparison of significance analysis of microarray and gene set enrichment analysis narrowed down the number of dysregulated ...
Comprehensive genome-wide analysis of mutational processes. Bioconductor version: Release (3.17) Mutational processes leave ... or DNA-repair deficient cells. The package covers a wide range of patterns including: mutational signatures, transcriptional ... MutationalPatterns integrates with common R genomic analysis workflows and allows easy association with (publicly available) ... for both extracting mutational signatures de novo and determining the contribution of previously identified mutational ...
DNA Mutational Analysis. *Dementia/genetics. *Exons. *Female. *Male. *Mutation. *Nerve Degeneration/genetics ...
... which is a chemical cousin of DNA. Learn about this gene and related health conditions. ... Mutational analysis of whole mitochondrial DNA in patients with MELAS and MERRF diseases. Exp Mol Med. 2010 Jun 30;42(6):446-55 ... The MT-TL1 gene provides instructions for making a molecule called a transfer RNA (tRNA), which is a chemical cousin of DNA. ... It changes a single DNA building block (nucleotide) in the MT-TL1 gene; the nucleotide adenine is replaced by the nucleotide ...
Here we report the cryo-EM structure at 3.3 Å resolution of the yeast ORC-Cdc6 bound to an 85-bp ARS1 origin DNA. The structure ... Eukaryotic DNA replication is mediated by many proteins which are tightly regulated for an efficient firing of replication at ... Here the authors report a cryo-EM structure of the yeast ORC-Cdc6 bound to an 85-bp ARS1 origin DNA revealing additional ... The S. cerevisiae ORC binds to specific DNA sequences throughout the cell cycle but becomes active only when it binds to the ...
Comprehensive Mutational Analysis of the BRCA1-Associated DNA Helicase and Tumor-Suppressor FANCJ/BACH1/BRIP1. Calvo, JA, ... A second DNA binding site on RFC facilitates clamp loading on gapped or nicked DNA. Liu, X.*, Gaubitz, C.*, Pajak, J., Kelch, ... The large terminase DNA packaging motor grips DNA with its ATPase domain for cleavage by the flexible nuclease domain.. Hilbert ... Unexpected new insights into DNA clamp loaders: Eukaryotic clamp loaders contain a second DNA site for recessed 5′ ends that ...
Mutational analysis suggests that while the ssDNA-binding channel is important for helicase activity, it is not used in DNA ... Structural and functional analysis of the nucleotide and DNA binding activities of the human PIF1 helicase.. Dehghani-Tafti, S. ... Pif1 is a multifunctional helicase and DNA processing enzyme that has roles in genome stability. The enzyme is conserved in ... Pif1 is a multifunctional helicase and DNA processing enzyme that has roles in genome stability. The enzyme is conserved in ...
Mutational analysis of the TSC1 and TSC2 genes in a diagnostic setting: genotype - phenotype correlations and comparison of ... diagnostic DNA techniques in Tuberous Sclerosis Complex. Eur J Hum Genet. 2005;13(6):731-741.. View this article via: PubMed ... Statistics in A, B, D, and F were determined by ANOVA; those in C were measured by repeated-measures analysis; and those in E ... B) Splenocytes from WT, T-Tsc2-/-, T-Rictor-/-, and DKO mice were stimulated in vitro for 24 hours prior to analysis of CD8+ T ...
Standard methods sequence DNA that has been extracted from a population of cells, such that not only the genetic composition of ... Single-cell genome analyses overcome these issues.. We are developing single-cell genome sequencing technologies to enable the ... The technology will answer burning questions on mutational burden in normal development and how this is impacted by germline ... An integrative analysis of the transcriptome, epigenome and proteome of distinct TEC subpopulations will be used to attain an ...
... mutational analysis and separate expression of the DNA polymerase and RNase H activities Tanese, Naoko; Goff, Stephen P. 1988 ... Structural Determinants of DNA-binding Specificity for Hox Proteins Liu, Peng 2012 Theses BiophysicsBioinformatics ... From DNA to proteins via the ribosome: Structural insights into the workings of the translation machinery Frank, Joachim; ... 1. Synthesis of a 600-nucleotide-long plus-strand DNA by virions of Moloney murine leukemia virus Mitra, Sudha W.; Goff, ...
Quantitative analysis of KRAS and BRAF mutational status in DNA from PAXgene Tissue fixed, paraffin-embedded (PFPE) tissue ... DNA-rich and DNA-poor tissues, processed with the PAXgene Tissue DNA Kit on the QIAcube in one single run. DNA yield per 10 mg ... For an example, see Figure 2 in the Technical Note Quantitative analysis of KRAS and BRAF mutational status in DNA from PAXgene ... Morphological, Epigenomic, and Mutational Analyses of PAXgene Tissue Fixed, Paraffin-embedded (PFPE) Colorectal Cancer (CRC) ...
Gene dosage, Oncogenes, Tumor cell line, DNA mutational analysis, DNA methylation, Gene expression profiling ... DNA mutational analysis, DNA methylation, Gene expression profiling. Dr. Tao Xie is serving as an honorary reviewer for Journal ... DNA mutational analysis, DNA methylation, Gene expression profiling. Research Interest. ...
Linkage analysis used DNA from mapping panels of single homozygous mutant animals with mixed genetic backgrounds. RESULTS: The ... Consistent with the absence of mutations, further analysis excluded linkage of the mutant phenotypes to crx. Analysis is in ... analysis indicated that the zebrafish crx gene consisted of three exons and 2 introns, and spans 3.8 kb of genomic DNA. The ... linkage analysis excluded linkage of the mutant phenotypes to crx. CONCLUSIONS: Despite the presence of sequence variations in ...
Through follow-up DNA sequencing and computational analyses, they found that the dogs short limbs can be traced to one ... mutational event in the canine genome-a DNA insertion-that occurred early in the evolution of domestic dogs, some time after ... The new DNA can be inserted into the genome, usually at a different place than the original gene. ... The scientists surveyed more than 40,000 markers of DNA variation.. In the advance online edition of the journal Science on ...
... an evaluation of different DNA extraction protocols and the feasibility of mutational analysis from archival paraffin-embedded ... Cytogenetic and chromosome analysis. In certain cases, it may be necessary to collect material for cytogenetic analysis. ... 3, 6, 14, 24, 25, 26, 27] specimen collection, cytogenetic and chromosome analysis, [14] and postmortem chemistry. [14] ... Vitreous postmortem chemical analysis. NewsPath [serial online]. College of American Pathologists. December 1, 2008. [28] ...
Circulating tumor DNA analysis of the phase III VOYAGER trial : KIT mutational landscape and outcomes in patients with advanced ... The analysis of regulation and deregulation of key pathways is linking basic biology with pathophysiology. ... Proteogenomic analysis reveals RNA as a source for tumor-agnostic neoantigen identification ... Küppers, Ralf; Schadendorf, Dirk; ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium, et.al. ...
A new paper in the journal Cancer Discovery has now identified specific patterns of DNA damage triggered by diets rich in red ... The analysis revealed a distinct mutational signature -- a pattern that had never before been identified but was indicative of ... A new paper in the journal Cancer Discovery has now identified specific patterns of DNA damage triggered by diets rich in red ... A new paper in the journal Cancer Discovery has now identified specific patterns of DNA damage triggered by diets rich in red ...
Colorectal cancers exhibit substantially increased mutational burdens relative to normal cells. Sequencing normal colorectal ... Signatures of multiple mutational processes were revealed; some of these were ubiquitous and continuous, whereas others were ... DNA Copy Number Variations. , DNA Mutational Analysis. , Epithelial Cells. , Female. , Humans. , Intestinal Mucosa. , Male. , ... Signatures of multiple mutational processes were revealed; some of these were ubiquitous and continuous, whereas others were ...
... molecular testing by targeted mutational analysis is easily done and interpreted. The two mutations, G1138A and G1138C, cause ... 13] About 98% of diagnosed patients have the G1138A mutation, resulting in a G-to-A DNA nucleotide point change. One percent of ... G1138A and G1138C mutations of FGFR3 account for 99% of the mutational changes in patients with achondroplasia. A specific ... Severe achondroplasia with developmental delay and acanthosis nigricans (SADDAN): phenotypic analysis of a new skeletal ...
The urine supernatant will be run over a DNA affinity column to capture free-DNA for analysis. Nucleic acids isolated from ... Detection of tumor presence will be compared in urine specimens undergoing mutational analysis and the current standard of ... The purpose of this study is to determine if analysis of DNA and protein material found in urine will be useful in the ... The cancer assays to be tested use DNA analysis and antibodies to specific proteins as well as functional assays for proteins ...
A mutational analysis of the yeast proliferating cell nuclear antigen indicates distinct roles in DNA replication and DNA ... B, DNA synthesis activity in the treated cells was determined by a colorimetric BrdU-incorporation analysis. For each data ... B, DNA synthesis activity in the treated cells was determined by a colorimetric BrdU-incorporation analysis. For each data ... Further study showed that this phosphorylation enhances PCNA activity in DNA replication and DNA damage repair partly by ...
Anemia; complications/diagnosis/genetics, Brain; metabolism/pathology, Ceruloplasmin; genetics, DNA Mutational Analysis, ...
Prospective study of the accuracy of EGFR mutational analysis by high-resolution melting analysis in small samples obtained ... 72 only two had insufficient DNA for analysis, whereas Savic and colleagues80 successfully sequenced the DNA from 93% of their ... problems are associated with obtaining suitable DNA for analysis. The quality of the samples, the quality of the extracted DNA ... Genetic analysis. The majority of DNA analysed has been obtained from paraffin-embedded tissue,10 15 40 42 43 61-63 65-67 70-77 ...
Mutational signatures and 5-year overall survival (OS) were as follows [45] :. * Mutated immunoglobulin heavy variable (IGHV), ... Gene expression profile analysis identified MCL patient subsets with more than 5 years difference in median survival, based on ... del(11q)/ ATM mutations and upregulation of NF- κB and DNA repair pathways: 56.7% OS ... Cell surface marker analysis by flow cytometry: kappa/lambda, CD19, CD20, CD5, CD23, CD10 ...
  • A mutational signature of aristolochic acid was observed in the tumour DNA, and the principal aristolochic acid-specific mutation spectra and deleterious mutations were present in the mRNA of up to 50% of genes that were active in tumours. (who.int)
  • The identified mutational signature of aristolochic acid (Figure 1) can serve as a key molecular marker of exposure to aristolochic acid, and the characteristic mutation spectra have been investigated for their functional impact to elucidate the molecular bases of the aristolochic acid-associated tumours. (who.int)
  • The package covers a wide range of patterns including: mutational signatures, transcriptional and replicative strand bias, lesion segregation, genomic distribution and association with genomic features, which are collectively meaningful for studying the activity of mutational processes. (bioconductor.org)
  • The package provides functionalities for both extracting mutational signatures de novo and determining the contribution of previously identified mutational signatures on a single sample level. (bioconductor.org)
  • Mutational signatures are identified in the genomes of the rat tumours and exposed cells, and are matched with the pre-mutagenic DNA lesions identified by LC-MS/MS DNA adductomic analysis of the cell exposure models. (who.int)
  • Analysis of mutational signatures focuses on how characteristic somatic DNA mutation patterns reflect the contributions of particular mutagenic processes to cancer development, and it is thus of key importance for cancer etiology and carcinogen exposure studies. (who.int)
  • A considerable fraction of the compendium of mutational signatures extracted from cancer genome sequencing studies remains without etiological explanation, and mutational signatures alone may be insufficient in explaining cancer causes. (who.int)
  • The MUTSPEC 2.0 project was developed to accommodate a highly integrated design to identify mutational (and other toxicogenomic) signatures of carcinogens derived by genome-scale sequencing analysis of mutually complementary and cross-validating systems. (who.int)
  • C) Mutational signatures identified in the EN UTUC tumours (COSMIC SBS22 = aristolochic acid mutational signature). (who.int)
  • We are developing single-cell genome sequencing technologies to enable the discovery of the entire spectrum of DNA mutation -including the acquisition of ploidy changes, aneuploidies, copy number variants, structural variants, retrotranspositions, indels, and single nucleotide variants. (sanger.ac.uk)
  • [ 13 ] About 98% of diagnosed patients have the G1138A mutation, resulting in a G-to-A DNA nucleotide point change. (medscape.com)
  • One percent of cases have a G-to-C DNA point change at nucleotide 1138, causing the G1138C mutation. (medscape.com)
  • We propose to assess the use of a multiple mutation-based assay, using DNA from exfoliated cells in the urine of patients, to establish the sensitivity and specificity in tumor detection compared to cystoscopy and cytology. (centerwatch.com)
  • We observed mutation patterns (COSMIC signature SBS17) consistent with a possible role oxidative DNA damage processes linked to inflammation and cell keratinization. (who.int)
  • Dr. Tao Xie is currently affiliated to Pfizer Global Research and Development, USA, continuing research in the specialized scientific area of Gene dosage, Oncogenes, Tumor cell line, DNA mutational analysis, DNA methylation, Gene expression profiling. (iomcworld.com)
  • Although its precise biological function remains unclear, its proximity to mitochondrial DNA (mtDNA) makes it an excellent candidate to participate in mtDNA replication, metabolism and maintenance. (mdpi.com)
  • The mutational analysis of mitochondrial DNA in maternal inheritance of polycystic ovarian syndrome. (cdc.gov)
  • Mutational processes leave characteristic footprints in genomic DNA. (bioconductor.org)
  • An integrative analysis of the transcriptome, epigenome and proteome of distinct TEC subpopulations will be used to attain an unparalleled systems-level understanding of the molecular conditions that select a tolerant T cell repertoire under normal physiological conditions. (sanger.ac.uk)
  • The methods for tissue fixation currently used in traditional histology are of limited use for molecular analysis. (qiagen.com)
  • PAXgene Tissue reagents in prefilled containers and PAXgene Tissue Kits provide a complete preanalytical solution for collection, fixation, and stabilization of tissue, and purification of high-quality nucleic acids for molecular research analysis. (qiagen.com)
  • hence, molecular testing by targeted mutational analysis is easily done and interpreted. (medscape.com)
  • In addition, we propose to isolate free-DNA for use in molecular assays. (centerwatch.com)
  • The Epigenomics and Mechanisms Branch (EGM) performs molecular analyses in the framework of these two well-studied settings in order to devise profiling methodologies and develop biomarkers of exposure and cancer formation. (who.int)
  • Standard methods sequence DNA that has been extracted from a population of cells, such that not only the genetic composition of individual cells is lost, but also de novo mutations in cell(s) are effectively concealed by the bulk signal. (sanger.ac.uk)
  • Consistent with the absence of identified mutations, linkage analysis excluded linkage of the mutant phenotypes to crx. (zfin.org)
  • G1138A and G1138C mutations of FGFR3 account for 99% of the mutational changes in patients with achondroplasia. (medscape.com)
  • A number of techniques have been employed for genotypic assessment of tumour-associated DNA to identify EGFR mutations, each of which has advantages and disadvantages. (bmj.com)
  • This happens when DNA "processing errors," coupled with damage from external carcinogens and other factors, cause mutations that allow cells to go into reproductive overdrive, growing out of control and eventually overtaking healthy cells, bypassing the body's ability to police and repair errors and eventually crowding out the body's healthy tissue. (protomag.com)
  • Notre étude a démontré que les mutations du gène HFE sont fréquentes en Égypte chez les porteurs d'une β-thalassémie par rapport aux sujets témoins. (who.int)
  • PAXgene Tissue Kits and supplementary protocols provide efficient subsequent purification of RNA, miRNA, DNA, and/or proteins from the same sample. (qiagen.com)
  • Retrogenes arise from molecules called messenger RNA (mRNA), which are copies of a gene's DNA code that the cell needs in order to make proteins. (nih.gov)
  • The cancer assays to be tested use DNA analysis and antibodies to specific proteins as well as functional assays for proteins to attempt to identify bladder tumor presence. (centerwatch.com)
  • It is important to know whether other changes, including kidney stones, cystitis etc. cause the release of the same DNA or proteins into the urine as was found in cancer patients. (centerwatch.com)
  • This package provides a comprehensive set of flexible functions that allows researchers to easily evaluate and visualize a multitude of mutational patterns in base substitution catalogues of e.g. healthy samples, tumour samples, or DNA-repair deficient cells. (bioconductor.org)
  • Comprehensive Mutational Analysis of the BRCA1-Associated DNA Helicase and Tumor-Suppressor FANCJ/BACH1/BRIP1. (umassmed.edu)
  • The remaining urine will be stored to evaluate biomarkers for the detection of tumor presence or progression using protein-based analyses. (centerwatch.com)
  • The MT-TL1 gene provides instructions for making a molecule called a transfer RNA (tRNA), which is a chemical cousin of DNA. (medlineplus.gov)
  • RESULTS: The analysis indicated that the zebrafish crx gene consisted of three exons and 2 introns, and spans 3.8 kb of genomic DNA. (zfin.org)
  • The scientists noted that, although functional, the extra gene lacks certain parts of the DNA code, called introns, found in normal genes. (nih.gov)
  • The new DNA can be inserted into the genome, usually at a different place than the original gene. (nih.gov)
  • Pif1 is a multifunctional helicase and DNA processing enzyme that has roles in genome stability. (rcsb.org)
  • Single-cell genome analyses overcome these issues. (sanger.ac.uk)
  • To understand what causes chondrodysplasia, a team of researchers led by Dr. Elaine Ostrander of NIH's National Human Genome Research Institute (NHGRI) examined DNA samples from 835 dogs from 76 distinct breeds, including 95 dogs from 8 breeds with short legs. (nih.gov)
  • Through follow-up DNA sequencing and computational analyses, they found that the dogs' short limbs can be traced to one mutational event in the canine genome-a DNA insertion-that occurred early in the evolution of domestic dogs, some time after the ancestor of modern dog breeds diverged from wolves. (nih.gov)
  • Human cancer genome sequencing studies have generated ample, publicly available data, and analyses of these data have substantially broadened the knowledge of somatic mutations accumulating in tumours. (who.int)
  • Colorectal cancers exhibit substantially increased mutational burdens relative to normal cells. (cam.ac.uk)
  • Ethanol's main metabolite acetaldehyde (AcA) may play a crucial role in head and neck cancers by forming covalent DNA adducts that can be mutagenic and may contribute to cancer development. (who.int)
  • Viral packaging ATPases utilize a glutamate switch to couple ATPase activity and DNA translocation. (umassmed.edu)
  • Mutational analysis suggests that while the ssDNA-binding channel is important for helicase activity, it is not used in DNA annealing. (rcsb.org)
  • The analysis revealed a distinct mutational signature -- a pattern that had never before been identified but was indicative of a type of DNA damage called 'alkylation. (ahram.org.eg)
  • Apart from wet-lab approaches, we also develop the computational means for the analysis of single cells. (sanger.ac.uk)
  • Genomic DNA was isolated and amplified using nature for these variants. (cdc.gov)
  • Dietary exposure to aristolochic acid can elicit severe nephrotoxic effects (aristolochic acid nephropathy [AAN]) and give rise to urologic and hepatobiliary cancers via specific damage of the DNA in the target tissues. (who.int)
  • MutationalPatterns integrates with common R genomic analysis workflows and allows easy association with (publicly available) annotation data. (bioconductor.org)
  • METHODS: Overlapping fragments were PCR amplified from genomic DNA isolated from homozygous mutant embryos and wild-type siblings (sibs). (zfin.org)
  • Substrate sequence selectivity of APOBEC3A implicates intra-DNA interactions. (umassmed.edu)
  • To address the knowledge gap, Giannakis and his colleagues sequenced DNA data from 900 patients with colorectal cancer, who were drawn from a much larger group of 280,000 health workers participating in a years-long studies that included lifestyle surveys. (ahram.org.eg)
  • The S. cerevisiae ORC binds to specific DNA sequences throughout the cell cycle but becomes active only when it binds to the replication initiator Cdc6. (nature.com)
  • The structure reveals that Cdc6 contributes to origin DNA recognition via its winged helix domain (WHD) and its initiator-specific motif. (nature.com)
  • We hypothesized that the role of AcA in alcohol-related oral cancer is based on the formation of specific mutational signature(s) which can be identified in suitable experimental systems. (who.int)
  • This specific damage, or mutational signature, is also observed in other organs, such as the oesophagus and the duodenum. (who.int)
  • Integrated Analysis of Genetic Abnormalities of the Histone Lysine Methyltransferases in Prostate Cancer. (cancerindex.org)
  • Identifying patients who have already started to accrue the mutational signature could help identify who's at greater risk of developing cancer, or catch the disease at an earlier stage. (ahram.org.eg)
  • The purpose of this study is to determine if analysis of DNA and protein material found in urine will be useful in the detection of urothelial cancer of the bladder and kidney. (centerwatch.com)
  • PCAWG, Pan-Cancer Analysis of Whole Genomes. (who.int)
  • The researchers applied an integrative multi-omics analysis of upper urinary tract urothelial carcinomas arising in the context of nephropathy linked to environmental exposure to the herbal carcinogen aristolochic acid. (who.int)
  • Crystal structure of APOBEC3A bound to single-stranded DNA reveals structural basis for cytidine deamination and specificity. (umassmed.edu)
  • Structural differences, in particular in the DNA strand separation wedge region, highlight significant evolutionary divergence of the human PIF1 protein from bacterial and yeast orthologues. (rcsb.org)
  • Analysis is in progress to map these loci and identify the genes responsible for the retinal degeneration phenotype in these mutant lines. (zfin.org)
  • The analysis of AcA exposure impact on the cell line genomes is underway and will be integrated with AcA-induced DNA adductome analyses. (who.int)
  • Linkage analysis used DNA from mapping panels of single homozygous mutant animals with mixed genetic backgrounds. (zfin.org)
  • The aetiology of CHD in extremely low quantities of DNA from old frozen the majority of cases is unknown. (cdc.gov)
  • Figure 1 Effects of aristolochic acid observed in upper tract urothelial carcinomas (UTUCs) from the endemic nephropathy (EN) regions. (who.int)
  • Analysis of copy number variation in AZF region of Y chromosome in patients with spermatogenic failure]. (cdc.gov)
  • Comparisons with the structures of yeast and bacterial Pif1 reveal a conserved ssDNA binding channel in hPIF1 that we show is critical for single-stranded DNA binding during unwinding, but not the binding of G quadruplex DNA. (rcsb.org)
  • The technology will answer burning questions on mutational burden in normal development and how this is impacted by germline genetic background, lifestyle, aging and disease. (sanger.ac.uk)
  • Here we report the cryo-EM structure at 3.3 Å resolution of the yeast ORC-Cdc6 bound to an 85-bp ARS1 origin DNA. (nature.com)
  • The application included interim analyses of a phase1/2 and a bridging study conducted in China, and a phase 3 study conducted in the United Arab Emirates and other Arab countries. (who.int)
  • The Origin Recognition Complex (ORC) binds to sites in chromosomes to specify the location of origins of DNA replication. (nature.com)
  • Effective mismatch repair depends on timely control of PCNA retention on DNA by the Elg1 complex. (umassmed.edu)
  • The large terminase DNA packaging motor grips DNA with its ATPase domain for cleavage by the flexible nuclease domain. (umassmed.edu)